Genetic and physiological analysis of the major OxyR-regulated katA from Xanthomonas campestris pv. phaseoli

Microbiology

Volumn 151, Issue 2, 2005, Pages 597-605

  Chauvatcharin, Nopmanee ^a,b   Atichartpongkul, Sopapan ^a   Utamapongchai, Supa ^a   Whangsuk, Wirongrong ^a   Vattanaviboon, Paiboon ^a   Mongkolsuk, Skorn ^a,b  

^a Chulabhorn Research Institute   (Thailand)

^b MAHIDOL UNIVERSITY   (Thailand)

Author keywords

[No Author keywords available]

Indexed keywords

ANKYRIN; CATALASE; HYDROGEN PEROXIDE; HYDROPEROXIDE; MENADIONE; OXIDIZING AGENT; SUPEROXIDE;

ADAPTATION; ARTICLE; BACTERICIDAL ACTIVITY; BACTERIUM MUTANT; BINDING SITE; CISTRON; CONTROLLED STUDY; ESCHERICHIA COLI; GEL MOBILITY SHIFT ASSAY; GENE EXPRESSION; GENE FUNCTION; GENETIC ANALYSIS; GENETIC COMPLEMENTATION; GENETIC TRANSCRIPTION; GROWTH CURVE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHENOTYPE; PLASMID; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN EXPRESSION; PROTEIN PURIFICATION; TRANSCRIPTION INITIATION; XANTHOMONAS CAMPESTRIS;

ANKYRINS; BACTERIAL PROTEINS; BASE SEQUENCE; CATALASE; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; HYDROGEN PEROXIDE; MOLECULAR SEQUENCE DATA; MUTATION; REPRESSOR PROTEINS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC; VITAMIN K 3; XANTHOMONAS CAMPESTRIS;

EID: 14044265674     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.27598-0     Document Type: Article

References (35)

1. Alexeyev, M. F. (1999). The pKNOCK series of broad-host-range mobilizable suicide vectors for gene knockout and targeted DNA insertion into the chromosome of gram-negative bacteria. Biotechniques 26, 824-826, 828.
2. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
3. Beers, R. F. & Sizer, I. W. (1952). A spectrophotometric method for measuring the breakdown of hydrogen peroxide by catalase. J Biol Chem 195, 133-135.
4. Bendtsen, J. D., Nielsen, H., von Heijne, G. & Brunak, S. (2004). Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340, 783-795.
5. Carpena, X., Soriano, M., Klotz, M. G., Duckworth, H. W., Donald, L. J., Melik-Adamyan, W., Fita, I. & Loewen, P. C. (2003). Structure of the clade 1 catalase, CatF of Pseudomonas syringae, at 1.8 Å resolution. Proteins 50, 423-436.
6. Chauvatcharin, N., Vattanaviboon, P., Switala, J., Loewen, P. C. & Mongkolsuk, S. (2003). Cloning and characterization of katA encoding the major monofunctional catalase from Xanthomonas campestris pv. phaseoli, and characterization of the encoded catalase KatA. Curr Microbiol 46, 83-87.
7. Claros, M. G. & von Heijne, G. (1994). TopPred II: an improved software for membrane protein structure predictions. Comput Appl Biosci 10, 685-686.
8. Farr, S. B. & Kogoma, T. (1991). Oxidative stress responses in Escherichin coli and Salmonella typhimurium. Microbiol Rev 55, 561-585.
9. Fuangthong, M. & Mongkolsuk, S. (1997). Isolation and characterization of a multiple peroxide resistant mutant from Xanthomonas campestris pv. phaseoli. FEMS Microbiol Lett 152 189-194.
10. Hahn, J. S., Oh, S. Y. & Roe, J. H. (2002). Role of OxyR as a peroxide-sensing positive regulator in Streptomyces coelicolor A3(2). J Bacteriol 184, 5214-5222.
11. Howell, M. L., Alsabbagh, E., Ma, J. F. & 10 other authors (2000). AnkB, a periplasmic ankyrin-like protein in Pseudomonas aeruginosa, is required for optimal catalase B (KatB) activity and resistance to hydrogen peroxide. J Bacteriol 182, 4545-4556.
12. Katzen, F., Becker, A., Zorreguieta, A., Puhler, A. & Ielpi, L. (1996). Promoter analysis of the Xanthomonas campestris pv. campestris gum operon directing biosynthesis of the xanthan polysaccharide. J Bacteriol 178, 4313-4318.
13. Klotz, M. G., Klassen, G. R. & Loewen, P. C. (1997). Phylogenetic relationships among prokaryotic and eukaryotic catalases. Mol Biol Evol 14, 951-958.
14. Kovach, M. E., Elzer, P. H., Hill, D. S., Robertson, G. T., Farris, M. A., Roop, R. M. 2nd & Peterson, K. M. (1995). Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene 166, 175-176.
15. Lopraserk S., Fuangthong, M., Whangsuk, W., Atichartpongkul, S. & Mongkolsuk, S. (2000). Molecular and physiological analysis of an OxyR-regulated ahpC promoter in Xanthomonas campestris pv. phaseoli. Mol Microbiol 37, 1504-1514.
16. 2 toxicity protection of a superoxide-inducible monofunctional catalase gene from Xanthomonas oryzae pv. oryzae. J Bacteriol 178, 3578-3584.
17. Mongkolsuk S., Vattanaviboon, P. & Praitaun, W. (1997a). Induced adaptive and cross-protection responses against oxidative stress killing in a bacterial phytopathogen, Xanthomonas oryzae pv. oryzae. FEMS Microbiol Lett 146, 217-221.
18. Mongkolsuk S., Loprasert, S., Whangsuk, W., Fuangthong, M. & Atichartpongkun, S. (1997b). Characterization of transcription organization and analysis of unique expression patterns of an alkyl hydroperoxide reductase C gene (ahpC) and the peroxide regulator operon ahpF-oxyR-orfX from Xanthomonas campestris pv. phaseoli. J Bacteriol 179, 3950-3955.
19. Mongkolsuk S., Praituan, W., Loprasert, S., Fuangthong, M. & Chamnongpol, S. (1998a). Identification and characterization of a new organic hydroperoxide resistance (ohr) gene with a novel pattern of oxidative stress regulation from Xanthomonas campestris pv. phaseoli. J Bacteriol 180, 2636-2643.
20. Mongkolsuk, S., Sukchawalit, R., Loprasert, S., Praituan, W. & Upaichit, A. (1998b). Construction and physiological analysis of a Xanthomonas mutant to examine the role of the oxyR gene in oxidant-induced protection against peroxide killing. J Bacteriol 180, 3988-3991.
21. Mongkolsuk S., Whangsuk, W., Vattanaviboon, P., Loprasert, S. & Fuangthong, M. (2000). A Xanthomonas alkyl hydroperoxide reductase subunit C (ahpC) mutant showed an altered peroxide stress response and complex regulation of the compensatory response of peroxide detoxification enzymes. J Bacteriol 182, 6845-6849.
22. Mongkolsuk S., Panmanee, W., Atichartpongkul, S., Vattanaviboon, P., Whangsuk, W., Fuangthong, M., Eiamphungporn, W., Sukchawalit, R. & Utamapongchai, S. (2002). The repressor for an organic peroxide-inducible operon is uniquely regulated at multiple levels. Mol Microbiol 44, 793-802.
23. Ochsner, U. A., Vasil, M. L., Alsabbagh, E., Parvatiyar, K. & Hassett, D. J. (2000). Role of the Pseudomonas aeruginosa oxyR-recG operon in oxidative stress defense and DNA repair: OxyR-dependent regulation of katB-ankB, ahpB, and ahpC-ahpF. J Bacteriol 182, 4533-4544.
24. SambrooK J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
25. Seaver, L. C. & Imlay, J. A. (2001). Hydrogen peroxide fluxes and compartmentalization inside growing Escherichia coli. J Bacteriol 183, 7182-7189.
26. Storz, G. & Altuvia, S. (1994). OxyR regulon. Methods Enzymol 234, 217-223.
27. Toledano, M. B., Kullik, I., Trinh, F., Baird, P. T., Schneider, T. D. & Storz, G. (1994). Redox-dependent shift of OxyR-DNA contacts along an extended DNA-binding site: a mechanism for differential promoter selection. Cell 78, 897-909.
28. Tseng, H. J., McEwan, A. G., Apicella, M. A. & Jennings, M. P. (2003). OxyR acts as a repressor of catalase expression in Neisseria gonorrhoeae. Infect Immun 71, 550-556.
29. Vattanaviboon, P. & Mongkolsuk, S. (2000). Expression analysis and characterization of the mutant of a growth-phase- and starvation-regulated monofunctional catalase gene from Xanthomonas campestris pv. phaseoli. Gene 241, 259-265.
30. Vattanaviboon, P., Sriprang, R. & Mongkolsuk, S. (2001). Catalase has a novel protective role against electrophile killing of Xanthomonas. Microbiology 147, 491-498.
31. Visick, K. L. & Ruby, E. G. (1998). The periplasmic, group III catalase of Vibrio fischeri is required for normal symbiotic competence and is induced both by oxidative stress and by approach to stationary phase. J Bacteriol 180, 2087-2092.
32. Weisberg, R. A. & Gottesman, M. E. (1999). Processive antitermination. J Bacteriol 181, 359-367.
33. Wilson, S. A., Wachira, S. J., Norman, R. A., Pearl, L. H. & Drew, R. E. (1996). Transcription antitermination regulation of the Pseudomonas aeruginosa amidase operon. EMBO J 15, 5907-5916.
34. Xu, X. Q., Li, L. P. & Pan, S. Q. (2001). Feedback regulation of an Agrobacterium catalase gene katA involved in Agrobacterium-plant interaction. Mol Microbiol 42, 645-657.
35. Zheng, M., Aslund, F. & Storz, G. (1998). Activation of the OxyR transcription factor by reversible disulfide bond formation. Science 279, 1718-1721.