Trace amine-associated receptors form structurally and functionally distinct subfamilies of novel G protein-coupled receptors

Genomics

Volumn 85, Issue 3, 2005, Pages 372-385

  Lindemann, Lothar ^a   Ebeling, Martin ^a   Kratochwil, Nicole A ^a   Bunzow, James R ^b   Grandy, David K ^b   Hoener, Marius C ^a  

^a F HOFFMANN LA ROCHE LTD   (Switzerland)

^b OREGON HEALTH AND SCIENCE UNIVERSITY   (United States)

Author keywords

Chimpanzee; GPCR; Nomenclature; Phylogeny; Trace amine

Indexed keywords

BIOGENIC AMINE; G PROTEIN COUPLED RECEPTOR;

AMINO ACID SEQUENCE; ANIMAL TISSUE; ARTICLE; CHIMPANZEE; CHROMOSOME ANALYSIS; CONTROLLED STUDY; EMBRYO; HUMAN; HUMAN CELL; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN FAMILY; PROTEIN FUNCTION; PROTEIN STRUCTURE; RAT; SPECIES DIFFERENCE;

MAMMALIA; PAN TROGLODYTES;

EID: 13844275983     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ygeno.2004.11.010     Document Type: Article

References (45)

1. E. Usdin M. Sandler Trace Amines and the Brain 1984 Dekker New York
2. B.A. Davis, and A.A. Boulton The trace amines and their acidic metabolites in depression-an overview Prog. Neuropsychopharmacol. Biol. Psychiatry 18 1994 17 45
3. M. Sandler, C.R. Ruthven, B.L. Goodwin, and A. Coppen Decreased cerebrospinal fluid concentration of free phenylacetic acid in depressive illness Clin. Chim. Acta 93 1979 169 171
4. S.G. Potkin Phenylethylamine in paranoid chronic schizophrenia Science 206 1979 470 471
5. R.T. Premont, R.R. Gainetdinov, and M.G. Caron Following the trace of elusive amines Proc. Natl. Acad. Sci. USA 98 2001 9474 9475
6. B. Borowsky Trace amines: identification of a family of mammalian G protein-coupled receptors Proc. Natl. Acad. Sci. USA 98 2001 8966 8971
7. J.R. Bunzow Amphetamine, 3,4-methylenedioxymethamphetamine, lysergic acid diethylamide, and metabolites of the catecholamine neurotransmitters are agonists of a rat trace amine receptor Mol. Pharmacol. 60 2001 1181 1188
8. K. Oosawa, N. Mutoh, and M.I. Simon Cloning of the C-terminal cytoplasmic fragment of the tar protein and effects of the fragment on chemotaxis of Escherichia coli J. Bacteriol. 170 1988 2521 2526
9. D.K. Lee Discovery and mapping of ten novel G protein-coupled receptor genes Gene 275 2001 83 91
10. I.S. Liu, I. Kusumi, C. Ulpian, T. Tallerico, and P. Seeman A serotonin-4 receptor-like pseudogene in humans Brain Res. Mol. Brain Res. 53 1998 98 103
11. D.K. Lee Cloning and characterization of additional members of the G protein-coupled receptor family Biochim. Biophys. Acta 1490 2000 311 323
12. Z. Zeng Cloning of a putative human neurotransmitter receptor expressed in skeletal muscle and brain Biochem. Biophys. Res. Commun. 242 1998 575 578
13. E. Birney, M. Clamp, and R. Durbin GeneWise and Genomewise Genome Res. 14 2004 988 995
14. B.J. Mowry, and D.J. Nancarrow Molecular genetics of schizophrenia Clin. Exp. Pharmacol. Physiol. 28 2001 66 69
15. D.F. Levinson Multicenter linkage study of schizophrenia candidate regions on chromosomes 5q, 6q, 10p, and 13q: schizophrenia linkage collaborative group III Am. J. Hum. Genet. 67 2000 652 663
16. Q. Cao Suggestive evidence for a schizophrenia susceptibility locus on chromosome 6q and a confirmation in an independent series of pedigrees Genomics 43 1997 1 8
17. S. Watson S. Arkinstall The G-Protein Linked Receptor Factsbook 1994 Academic Press London
18. P. Malherbe Mutational analysis and molecular modeling of the binding pocket of the metabotropic glutamate 5 receptor negative modulator 2-methyl-6-(phenylethynyl)-pyridine Mol. Pharmacol. 64 2003 823 832
19. X.M. Guan, T.S. Kobilka, and B.K. Kobilka Enhancement of membrane insertion and function in a type IIIb membrane protein following introduction of a cleavable signal peptide J. Biol. Chem. 267 1992 21995 21998
20. 3H] tryptamine binding site in human brain Prog. Brain Res. 106 1995 285 291
21. 3H]Tryptamine autoradiography in rat brain and choroid plexus reveals two distinct sites J. Pharmacol. Exp. Ther. 236 1986 548 559
22. 3H]Tryptamine: high affinity binding sites in rat brain Eur. J. Pharmacol. 78 1982 475 478
23. J.M. Saavedra β-Phenylethylamine, phenylethanolamine, tyramine and octopamine U. Trendelenburg N. Weiner Catecholamines II 1989 Springer-Verlag Berlin 181 201
24. F.C. Chen, and W.H. Li Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees Am. J. Hum. Genet. 68 2001 444 456
25. I. Ebersberger, D. Metzler, C. Schwarz, and S. Paabo Genomewide comparison of DNA sequences between humans and chimpanzees Am. J. Hum. Genet. 70 2002 1490 1497
26. M.V. Olson, and A. Varki Sequencing the chimpanzee genome: insights into human evolution and disease Nat. Rev. Genet. 4 2003 20 28
27. H.C. Sabelli, P. Fink, J. Fawcett, and C. Tom Sustained antidepressant effect of PEA replacement J. Neuropsychiatry Clin. Neurosci. 8 1996 168 171
28. H.C. Sabelli, and A.D. Mosnaim Phenylethylamine hypothesis of affective behavior Am. J. Psychiatry 131 1974 695 699
29. S. Shirkande, R. O'Reilly, B. Davis, D. Durden, and D. Malcom Plasma phenylethylamine levels of schizophrenic patients Can. J. Psychiatry 40 1995 221
30. T.A. Branchek, and T.P. Blackburn Trace amine receptors as targets for novel therapeutics: legend, myth and fact Curr. Opin. Pharmacol. 2 2003 90 97
31. P.W. Laird Simplified mammalian DNA isolation procedure Nucleic Acids Res. 19 1991 4293
32. P. Chomczynski, and N. Sacchi Single-step method of RNA isolation by acid guanidinium thiocyanate phenol-chloroform extraction Anal. Biochem. 162 1987 156 159
33. J. Sambrook, E.F. Fritsch, and T. Maniatis Molecular Cloning: a Laboratory Manual 1989 Cold Spring Harbor Laboratory Press New York
34. E. Casademunt The zinc finger protein NRIF interacts with the neurotrophin receptor p75(NTR) and participates in programmed cell death EMBO J. 18 1999 6050 6061
35. J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
36. A. Krogh, B. Larsson, G. von Heijne, and E.L. Sonnhammer Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes J. Mol. Biol. 305 2001 567 580
37. J.A. Ballesteros, L. Shi, and J.A. Javitch Structural mimicry in G protein-coupled receptors: implications of the high-resolution structure of rhodopsin for structure-function analysis of rhodopsin-like receptors Mol. Pharmacol. 60 2001 1 19
38. U. Gether Uncovering molecular mechanisms involved in activation of G protein-coupled receptors Endocr. Rev. 21 2000 90 113
39. Z.L. Lu, J.W. Saldanha, and E.C. Hulme Seven-transmembrane receptors: crystals clarify Trends Pharmacol. Sci. 23 2002 140 146
40. L. Shi, and J.A. Javitch The binding site of aminergic G protein-coupled receptors: the transmembrane segments and second extracellular loop Annu. Rev. Pharmacol. Toxicol. 42 2002 437 467
41. I. Visiers, J.A. Ballesteros, and H. Weinstein Three-dimensional representations of G protein-coupled receptor structures and mechanisms Methods Enzymol. 343 2002 329 371
42. K. Palczewski Crystal structure of rhodopsin: a G protein-coupled receptor Science 289 2000 739 745
43. M.W. Beukers, I. Kristiansen, A.P. Ijzerman, and I. Edvardsen TinyGRAP database: a bioinformatics tool to mine G-protein-coupled receptor mutant data Trends Pharmacol. Sci. 20 1999 475 477
44. P.R. Gerber Topological pharmacophore description of chemical structures using MAB-force-field derived data and corresponding similarity measures R. Carbo-Dorca Fundamentals of Molecular Similarity 2001 Kluwer Academic/Plenum New York 67 82
45. P. Rice, I. Longden, and A. Bleasby EMBOSS: the European Molecular Biology Open Software Suite Trends Genet. 16 2000 276 277