메뉴 건너뛰기




Volumn 21, Issue 3, 2005, Pages 333-337

Evaluating putative chimeric sequences from PCR-amplified products

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; GENE PRODUCT; NUCLEOTIDE;

EID: 13844266107     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti008     Document Type: Article
Times cited : (73)

References (19)
  • 2
    • 1542401220 scopus 로고    scopus 로고
    • Molecular phylogenetic analysis of Archaea and Bacteria in Wind Cave, South Dakota
    • Chelius,M.K. and Moore,J.C. (2003) Molecular phylogenetic analysis of Archaea and Bacteria in Wind Cave, South Dakota. Geomicrobiol. J., 21, 123-134.
    • (2003) Geomicrobiol. J. , vol.21 , pp. 123-134
    • Chelius, M.K.1    Moore, J.C.2
  • 5
    • 0034982036 scopus 로고    scopus 로고
    • Microbial seascapes revisited
    • DeLong,E.F. (2001) Microbial seascapes revisited. Curr. Opin. Microbiol., 4, 290-295.
    • (2001) Curr. Opin. Microbiol. , vol.4 , pp. 290-295
    • DeLong, E.F.1
  • 7
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
    • DOI: 10.1093/bioinformatics/bth226
    • Huber,T., Faulkner,G. and Hugenholtz,P. (2004) Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics, DOI: 10.1093/bioinformatics/bth226.
    • (2004) Bioinformatics
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 8
    • 0037217221 scopus 로고    scopus 로고
    • Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases
    • Hugenholtz,P. and Huber,T. (2003) Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases. Intl. J. Syst. Evol Microbiol., 53, 289-293.
    • (2003) Intl. J. Syst. Evol. Microbiol. , vol.53 , pp. 289-293
    • Hugenholtz, P.1    Huber, T.2
  • 9
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz,P., Goebel,B.M. and Pace,N.R. (1998) Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol., 180, 4765-4774.
    • (1998) J. Bacteriol. , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 10
    • 0030921309 scopus 로고    scopus 로고
    • A new computational method for the detection of chimeric 16S rRNA mixed bacterial populations
    • Komatsoulis,G.A. and Waterman,M.S. (1997) A new computational method for the detection of chimeric 16S rRNA mixed bacterial populations. Appl. Environ. Microbiol., 63, 2338-2346.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2338-2346
    • Komatsoulis, G.A.1    Waterman, M.S.2
  • 11
    • 0030982247 scopus 로고    scopus 로고
    • A molecular view of microbial diversity and the biosphere
    • Pace,N.R. (1997) A molecular view of microbial diversity and the biosphere. Science, 276, 734-740.
    • (1997) Science , vol.276 , pp. 734-740
    • Pace, N.R.1
  • 12
    • 0028915470 scopus 로고
    • Evaluation of nearest-neighbor methods for the detection of chimeric small-subunit rRNA sequences
    • Robinson-Cox,J.F., Bateson,M.M. and Ward,D.M. (1995) Evaluation of nearest-neighbor methods for the detection of chimeric small-subunit rRNA sequences. Appl. Environ. Microbiol., 61, 1240-1245.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1240-1245
    • Robinson-Cox, J.F.1    Bateson, M.M.2    Ward, D.M.3
  • 14
    • 0004249246 scopus 로고
    • 2nd edn. W.H. Freeman and Co., NY
    • Sokal,R.R. and Rohlf,F.J. (1981) Biometry, 2nd edn. W.H. Freeman and Co., NY.
    • (1981) Biometry
    • Sokal, R.R.1    Rohlf, F.J.2
  • 15
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki,M.T. and Giovannoni,S.J. (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol., 62, 625-630.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 16
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix-choice
    • Thompson,J.D., Higgins,D.G. and Gibson,T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix-choice. Nucleic Acids Res., 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 17
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
    • von Wintzingerode,F., Göbel,U.B. and Stackebrandt,E. (1997) Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev., 21 213-229.
    • (1997) FEMS Microbiol. Rev. , vol.21 , pp. 213-229
    • von Wintzingerode, F.1    Göbel, U.B.2    Stackebrandt, E.3
  • 18
    • 0041400104 scopus 로고
    • 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
    • Ward,D.M., Weller,R. and Bateson,M.M. (1990) 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature, 344, 33-44.
    • (1990) Nature , vol.344 , pp. 33-44
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 19
    • 0029972052 scopus 로고    scopus 로고
    • The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species
    • Wang,G.C.T. and Wang,Y. (1996) The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species. Microbiology, 142, 1107-1114.
    • (1996) Microbiology , vol.142 , pp. 1107-1114
    • Wang, G.C.T.1    Wang, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.