-
1
-
-
0015859467
-
Principles that govern the folding of protein chains
-
Anfinsen, C. 1973. Principles that govern the folding of protein chains. Science 181(4096):223-230.
-
(1973)
Science
, vol.181
, Issue.4096
, pp. 223-230
-
-
Anfinsen, C.1
-
2
-
-
0033497009
-
Dynamics of proteins and biomolecular complexes: Inferring functional motions from structure
-
Bahar, I. 1999. Dynamics of proteins and biomolecular complexes: inferring functional motions from structure. Reviews in Chemical Engineering 15(4):319-347.
-
(1999)
Reviews in Chemical Engineering
, vol.15
, Issue.4
, pp. 319-347
-
-
Bahar, I.1
-
3
-
-
0037847500
-
Geometrical approach to protein folding: A tube picture
-
Banavar, J. R., and Maritan, A. M. 2003. Geometrical approach to protein folding: a tube picture. Reviews of Modern Physics 75:23-34.
-
(2003)
Reviews of Modern Physics
, vol.75
, pp. 23-34
-
-
Banavar, J.R.1
Maritan, A.M.2
-
5
-
-
0001241926
-
Material interpolations in topology optimization
-
Bendsøe, M. P., and Sigmund, O. 1999. Material interpolations in topology optimization. Archive of Applied Mechanics 69:645-654.
-
(1999)
Archive of Applied Mechanics
, vol.69
, pp. 645-654
-
-
Bendsøe, M.P.1
Sigmund, O.2
-
6
-
-
0042221869
-
-
Springer-Verlag, Berlin
-
Bendsøe, M. P., and Sigmund, O. 2003. Topology Optimization: Theory, Methods, and Applications. Springer-Verlag, Berlin.
-
(2003)
Topology Optimization: Theory, Methods, and Applications
-
-
Bendsøe, M.P.1
Sigmund, O.2
-
7
-
-
0033954256
-
The protein data bank
-
Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N., and Bourne, P. E. 2000. The Protein Data Bank. Nucleic Acids Research 28:235-242.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
8
-
-
0032725441
-
Folding alphabets
-
Chan, H. S. 1999. Folding alphabets. Nature Structural Biology 6(11):994-996.
-
(1999)
Nature Structural Biology
, vol.6
, Issue.11
, pp. 994-996
-
-
Chan, H.S.1
-
9
-
-
0027122748
-
One thousand families for the molecular biologist
-
Chothia, C. 1992. One thousand families for the molecular biologist. Nature 357:543-544.
-
(1992)
Nature
, vol.357
, pp. 543-544
-
-
Chothia, C.1
-
10
-
-
0028858499
-
De novo design of the hydrophobic cores of proteins
-
Desjarlais, J. R., and Handel, T. M. 1995. De novo design of the hydrophobic cores of proteins. Protein Science 4:2006-2018.
-
(1995)
Protein Science
, vol.4
, pp. 2006-2018
-
-
Desjarlais, J.R.1
Handel, T.M.2
-
11
-
-
0026589733
-
The dead-end elimination theorem and its use in protein side-chain positioning
-
Desmet, J., De Maeyer, M., Hazes, B., and Lasters, I. 1992. The dead-end elimination theorem and its use in protein side-chain positioning. Nature 356:539-542.
-
(1992)
Nature
, vol.356
, pp. 539-542
-
-
Desmet, J.1
De Maeyer, M.2
Hazes, B.3
Lasters, I.4
-
13
-
-
0028929556
-
Principles of protein folding - A perspective from simple exact models
-
Dill, K. A., Bromberg, S., Yue, K., Fiebig, K. M., Yee, D. P., Thomas, P. D., and Chan, H. S. 1995. Principles of protein folding - a perspective from simple exact models. Protein Science 4:561-602.
-
(1995)
Protein Science
, vol.4
, pp. 561-602
-
-
Dill, K.A.1
Bromberg, S.2
Yue, K.3
Fiebig, K.M.4
Yee, D.P.5
Thomas, P.D.6
Chan, H.S.7
-
16
-
-
0028237287
-
Optimal selection of sequences f proteins of known structure by simulated evolution
-
Hellinga, H. W., and Richards, F. M. 1994. Optimal selection of sequences f proteins of known structure by simulated evolution. Proceedings of the National Academy of Sciences 91:5803-5807.
-
(1994)
Proceedings of the National Academy of Sciences
, vol.91
, pp. 5803-5807
-
-
Hellinga, H.W.1
Richards, F.M.2
-
17
-
-
0037080323
-
Molecular mechanisms of Chaperonin GroEL-GroES function
-
Keskin, O., Bahar, I., Flatow, D., Covell, D. J., and Jernigan, R. L. 2002. Molecular mechanisms of Chaperonin GroEL-GroES function. Biochemistry 41(2):491.
-
(2002)
Biochemistry
, vol.41
, Issue.2
, pp. 491
-
-
Keskin, O.1
Bahar, I.2
Flatow, D.3
Covell, D.J.4
Jernigan, R.L.5
-
18
-
-
13944274522
-
Design of HP models of proteins by energy gap criterion using continuous modeling and optimization
-
Salt Lake City, UT, September
-
Koh, S. K., and Ananthasuresh, G. K. 2004. Design of HP models of proteins by energy gap criterion using continuous modeling and optimization. Proceedings of the ASME IDETC 2004 Mechanisms and Robotics Conference, Salt Lake City, UT, September.
-
(2004)
Proceedings of the ASME IDETC 2004 Mechanisms and Robotics Conference
-
-
Koh, S.K.1
Ananthasuresh, G.K.2
-
19
-
-
0024750637
-
A lattice statistical mechanics model of the conformational and sequence spaces of proteins
-
Lau, K. F., and Dill, K. A. 1989. A lattice statistical mechanics model of the conformational and sequence spaces of proteins. Macromolecules 22:3986.
-
(1989)
Macromolecules
, vol.22
, pp. 3986
-
-
Lau, K.F.1
Dill, K.A.2
-
20
-
-
0029772552
-
Emergence of preferred structures in a simple model of protein folding
-
Li, H., Helling, R., Tang, C., and Wingreen, N. S. 1996. Emergence of preferred structures in a simple model of protein folding. Science 273:666-669.
-
(1996)
Science
, vol.273
, pp. 666-669
-
-
Li, H.1
Helling, R.2
Tang, C.3
Wingreen, N.S.4
-
21
-
-
7044220745
-
Nature of driving force for protein folding: A result from analyzing the statistical potential
-
Li, H., Tang, C., and Wingreen, N. S. 1997. Nature of driving force for protein folding: a result from analyzing the statistical potential. Physical Review Letters 79(4):765-768.
-
(1997)
Physical Review Letters
, vol.79
, Issue.4
, pp. 765-768
-
-
Li, H.1
Tang, C.2
Wingreen, N.S.3
-
22
-
-
0037110580
-
Designability of protein structures: A lattice-model study using the Miyazawa-Jernigan matrix
-
Li, H., Tang, C., and Wingreen, N. S. 2002. Designability of protein structures: a lattice-model study using the Miyazawa-Jernigan matrix. Proteins: Structure, Function, and Genetics. 49:403-412.
-
(2002)
Proteins: Structure, Function, and Genetics
, vol.49
, pp. 403-412
-
-
Li, H.1
Tang, C.2
Wingreen, N.S.3
-
23
-
-
33845377127
-
Estimation of effective inter-residue contact energies from protein crystal structures: Quasi-chemical approximation
-
Miyazawa, S., and Jernigan, R. L. 1985. Estimation of effective inter-residue contact energies from protein crystal structures: quasi-chemical approximation. Macromolecules 18: 534-552.
-
(1985)
Macromolecules
, vol.18
, pp. 534-552
-
-
Miyazawa, S.1
Jernigan, R.L.2
-
24
-
-
0021108287
-
Designing proteins and peptides
-
Pabo, C. 1983. Designing proteins and peptides. Nature 301(5897):200.
-
(1983)
Nature
, vol.301
, Issue.5897
, pp. 200
-
-
Pabo, C.1
-
25
-
-
4143150944
-
Advances in computational protein design
-
Park, S., Yang, X., and Saven, J. 2004. Advances in computational protein design. Current Opinion in Structural Biology 14(4):487-494.
-
(2004)
Current Opinion in Structural Biology
, vol.14
, Issue.4
, pp. 487-494
-
-
Park, S.1
Yang, X.2
Saven, J.3
-
26
-
-
0033955344
-
Backbone cluster identification in proteins by a graph theoretical method
-
Patra, S. M., and Vishveshwara, S. 2000. Backbone cluster identification in proteins by a graph theoretical method. Biophysical Chemistry 84:13-26.
-
(2000)
Biophysical Chemistry
, vol.84
, pp. 13-26
-
-
Patra, S.M.1
Vishveshwara, S.2
-
27
-
-
21844461156
-
Convex global underestimation
-
Migdalas, A., editor. Kluwer Academic, Dordrecht
-
Phillips, A. T., Rosen, J. B, and Dill, K. A. 2001. Convex global underestimation. From Local to Global Optimization, Migdalas, A., editor. Kluwer Academic, Dordrecht, pp. 1-18.
-
(2001)
From Local to Global Optimization
, pp. 1-18
-
-
Phillips, A.T.1
Rosen, J.B.2
Dill, K.A.3
-
28
-
-
0023155210
-
Tertiary templates for proteins: Use of packing criteria in the enumeration of allowed sequences for different structural classes
-
Ponder, J. W., and Richards, F. M. 1987. Tertiary templates for proteins: use of packing criteria in the enumeration of allowed sequences for different structural classes. Journal of Molecular Biology 193:775-791.
-
(1987)
Journal of Molecular Biology
, vol.193
, pp. 775-791
-
-
Ponder, J.W.1
Richards, F.M.2
-
30
-
-
0028270634
-
Kinetics of protein folding: A lattice model study of the requirements for folding to the native state
-
Sali, A., Shakhnovich, E., and Karplus, M. 1994. Kinetics of protein folding: a lattice model study of the requirements for folding to the native state. Journal of Molecular Biology 235:1614-1636.
-
(1994)
Journal of Molecular Biology
, vol.235
, pp. 1614-1636
-
-
Sali, A.1
Shakhnovich, E.2
Karplus, M.3
-
31
-
-
0035105547
-
Sequence design in lattice models by graph theoretical methods
-
Sanjeev, B. S., Patra, S. M., and Vishveshwara, S. 2001. Sequence design in lattice models by graph theoretical methods. Journal of Chemical Physics 114(4):1904-1914.
-
(2001)
Journal of Chemical Physics
, vol.114
, Issue.4
, pp. 1904-1914
-
-
Sanjeev, B.S.1
Patra, S.M.2
Vishveshwara, S.3
-
33
-
-
0031561289
-
Statistical mechanics of the combinatorial synthesis and analysis of folding macromolecules
-
Saven, J. G., and Wolynes, P. G. 1997. Statistical mechanics of the combinatorial synthesis and analysis of folding macromolecules. Journal of Physics and Chemistry B 101:8375-8389.
-
(1997)
Journal of Physics and Chemistry B
, vol.101
, pp. 8375-8389
-
-
Saven, J.G.1
Wolynes, P.G.2
-
34
-
-
0027234766
-
Engineering of stable and fast-folding sequences of model proteins
-
Shaknovich, E. I., and Gutin, A. M. 1993. Engineering of stable and fast-folding sequences of model proteins. Proceed ings of the National Academy of Sciences, USA, 90:7195-7199.
-
(1993)
Proceed Ings of the National Academy of Sciences, USA
, vol.90
, pp. 7195-7199
-
-
Shaknovich, E.I.1
Gutin, A.M.2
-
35
-
-
0036891794
-
A multiphase level set framework for image segmentation using the Mumford and Shah model
-
Vese, L. A., and Chan, T. F. 2002. A multiphase level set framework for image segmentation using the Mumford and Shah model. International Journal of Computer Vision 50(3):271-293.
-
(2002)
International Journal of Computer Vision
, vol.50
, Issue.3
, pp. 271-293
-
-
Vese, L.A.1
Chan, T.F.2
-
36
-
-
2442450904
-
Protein structure: Insights from graph theory
-
Vishveshwara, S., Brinda, K. V., and Kannan, N. 2002. Protein structure: insights from graph theory. Journal of Theoretical Computational Chemistry 1(1):187-211.
-
(2002)
Journal of Theoretical Computational Chemistry
, vol.1
, Issue.1
, pp. 187-211
-
-
Vishveshwara, S.1
Brinda, K.V.2
Kannan, N.3
-
37
-
-
0032726679
-
A computational approach to simplifying the protein folding alphabet
-
Wang, J., and Wang, W. 1999. A computational approach to simplifying the protein folding alphabet. Nature Structural Biology 6(11):1033-1038.
-
(1999)
Nature Structural Biology
, vol.6
, Issue.11
, pp. 1033-1038
-
-
Wang, J.1
Wang, W.2
-
38
-
-
0037414968
-
A level set method for structural topology optimization
-
Wang, M. Y., Wang, X. M., and Guo, D. M. 2003. A level set method for structural topology optimization. Computer Methods in Applied Mechanics and Engineering 192(1):227-246.
-
(2003)
Computer Methods in Applied Mechanics and Engineering
, vol.192
, Issue.1
, pp. 227-246
-
-
Wang, M.Y.1
Wang, X.M.2
Guo, D.M.3
-
39
-
-
0035727235
-
Topology optimization of compliant mechanisms with multiple materials using a peak function material interpolation scheme
-
Yin, L., and Ananthasuresh, G. K. 2001. Topology optimization of compliant mechanisms with multiple materials using a peak function material interpolation scheme. Structural and Multidisciplinary Optimization 23(1):49-62.
-
(2001)
Structural and Multidisciplinary Optimization
, vol.23
, Issue.1
, pp. 49-62
-
-
Yin, L.1
Ananthasuresh, G.K.2
-
40
-
-
0036544395
-
Novel design technique for electrothermally actuated compliant micromechanisms
-
Yin, L., and Ananthasuresh, G. K. 2002. Novel design technique for electrothermally actuated compliant micromechanisms. Sensors and Actuators A 97/98:599-609.
-
(2002)
Sensors and Actuators A
, vol.97-98
, pp. 599-609
-
-
Yin, L.1
Ananthasuresh, G.K.2
-
41
-
-
0035416177
-
Optimality criteria method for the topology optimization under multiple constraints
-
Yin, L., and Yang, W. 2001. Optimality criteria method for the topology optimization under multiple constraints. Computers and Structures 79:1839-1850.
-
(2001)
Computers and Structures
, vol.79
, pp. 1839-1850
-
-
Yin, L.1
Yang, W.2
-
43
-
-
0034635349
-
Statistical theory of combinatorial libraries of folding proteins: Energetic discrimination of a target structure
-
Zou, J., and Saven, J. G. 2000. Statistical theory of combinatorial libraries of folding proteins: energetic discrimination of a target structure. Journal of Molecular Biology 296:281-294.
-
(2000)
Journal of Molecular Biology
, vol.296
, pp. 281-294
-
-
Zou, J.1
Saven, J.G.2
|