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Volumn 38, Issue 2, 2005, Pages 109-122

Use of population genetic structure to define species limits in the Rhizobiaceae

Author keywords

Ecotype; Genetic structure; MLST; Phylogeny; Polyphasic; Rhizobiaceae; Species concept; Symbiotic; Systematics

Indexed keywords

BACTERIUM; GENETIC STRUCTURE; POPULATION GENETICS;

EID: 13444293268     PISSN: 03345114     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review
Times cited : (6)

References (43)
  • 1
    • 0027763438 scopus 로고
    • Evolution of prokaryotic genomes
    • Arber, W. 1993. Evolution of prokaryotic genomes. Gene 135: 49-56.
    • (1993) Gene , vol.135 , pp. 49-56
    • Arber, W.1
  • 2
    • 0033515041 scopus 로고    scopus 로고
    • An Escherichia coli strain with all chromosomal rRNA operons inactivated: Complete exchange of rRNA genes between bacteria
    • Asai, T., Zaprojets, D., Squires, C., and Squires, C.L. 1999. An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteria. Proceeding of the National Academy of Sciences USA 96: 1971-1976.
    • (1999) Proceeding of the National Academy of Sciences USA , vol.96 , pp. 1971-1976
    • Asai, T.1    Zaprojets, D.2    Squires, C.3    Squires, C.L.4
  • 4
    • 0011215011 scopus 로고    scopus 로고
    • Classification of prokaryotic organisms and the concept of bacterial speciation
    • Boone, D.R. and Castenholz, R.W., eds. Springer-Verlag, New York
    • Brenner, D.J., Staley, J.T., and Krieg, N.R. 2001. Classification of prokaryotic organisms and the concept of bacterial speciation. In: Bergey's Manual of Systematic Bacteriology. Boone, D.R. and Castenholz, R.W., eds. Springer-Verlag, New York, pp. 27-31.
    • (2001) Bergey's Manual of Systematic Bacteriology , pp. 27-31
    • Brenner, D.J.1    Staley, J.T.2    Krieg, N.R.3
  • 5
    • 0035200743 scopus 로고    scopus 로고
    • Is characterization of a single isolate sufficient for valid publication of a new genus or species? Proposal to modify Recommendation 30b of the Bacteriological Code (1990 Revision)
    • Christensen, H., Bisgaard, M., Frederiksen, W., Mutters, R., Kuhnert, P., and Olsen, J.E. 2001. Is characterization of a single isolate sufficient for valid publication of a new genus or species? Proposal to modify Recommendation 30b of the Bacteriological Code (1990 Revision). International Journal of Systematic Bacteriology 51: 2221-2225.
    • (2001) International Journal of Systematic Bacteriology , vol.51 , pp. 2221-2225
    • Christensen, H.1    Bisgaard, M.2    Frederiksen, W.3    Mutters, R.4    Kuhnert, P.5    Olsen, J.E.6
  • 6
    • 0000725686 scopus 로고    scopus 로고
    • The role of genetic exchange in bacterial evolution
    • Cohan, F.M. 1996. The role of genetic exchange in bacterial evolution. ASM News 62: 631-636.
    • (1996) ASM News , vol.62 , pp. 631-636
    • Cohan, F.M.1
  • 7
    • 0035527404 scopus 로고    scopus 로고
    • Bacterial species and speciation
    • Cohan, F.M. 2001. Bacterial species and speciation. Systematic Biology 50: 513-524.
    • (2001) Systematic Biology , vol.50 , pp. 513-524
    • Cohan, F.M.1
  • 8
    • 0025788069 scopus 로고
    • Recombination in Escherichia coli and the definition of a biological species
    • Dykhuizen, D.E. and Green, L. 1991. Recombination in Escherichia coli and the definition of a biological species. Journal of Bacteriology 173: 7257-7268.
    • (1991) Journal of Bacteriology , vol.173 , pp. 7257-7268
    • Dykhuizen, D.E.1    Green, L.2
  • 10
    • 0030467103 scopus 로고    scopus 로고
    • Corresponding 16S rRNA gene segments in Rhizobiaceae and Aeromonas yield discordant phylogenies
    • Eardly, B.D., Wang, F.-S., and van Berkum, P. 1996. Corresponding 16S rRNA gene segments in Rhizobiaceae and Aeromonas yield discordant phylogenies. Plant and Soil 186: 69-74.
    • (1996) Plant and Soil , vol.186 , pp. 69-74
    • Eardly, B.D.1    Wang, F.-S.2    Van Berkum, P.3
  • 11
    • 13444288544 scopus 로고    scopus 로고
    • How stable are the core genes of bacterial pathogens?
    • Feil, E.J. 2003. How stable are the core genes of bacterial pathogens? ASM News 6: 234-238.
    • (2003) ASM News , vol.6 , pp. 234-238
    • Feil, E.J.1
  • 13
    • 1342304133 scopus 로고    scopus 로고
    • BURST: Inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequencing typing data
    • Feil., E.J., Li, B.C., Aanensen, D.M., Manage, W.P., and Spratt, B.G. 2004. eBURST: Inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequencing typing data. Journal of Bacteriology 186: 1518-1530.
    • (2004) Journal of Bacteriology , vol.186 , pp. 1518-1530
    • Feil, E.J.1    Li, B.C.2    Aanensen, D.M.3    Manage, W.P.4    Spratt, B.G.5
  • 14
    • 0034769889 scopus 로고    scopus 로고
    • Recombination and the population structures of bacterial pathogens. 2001
    • Feil, E.J. and Spratt, B.G. 2001. Recombination and the population structures of bacterial pathogens. 2001. Annual Reviews of Microbiology 55: 561-590.
    • (2001) Annual Reviews of Microbiology , vol.55 , pp. 561-590
    • Feil, E.J.1    Spratt, B.G.2
  • 15
    • 0026585263 scopus 로고
    • How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
    • Fox, G.E., Wisotzkey, J.D., and Jurtshuk, P. 1992. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. International Journal of Systematic Bacteriology 42: 166-170.
    • (1992) International Journal of Systematic Bacteriology , vol.42 , pp. 166-170
    • Fox, G.E.1    Wisotzkey, J.D.2    Jurtshuk, P.3
  • 18
    • 0028605344 scopus 로고
    • Clonal divergence in Escherichia coli as a result of recombination, not mutation
    • Guttman, D.S. and Dykhuizen, D.E. 1994. Clonal divergence in Escherichia coli as a result of recombination, not mutation. Science 266:1380-1383.
    • (1994) Science , vol.266 , pp. 1380-1383
    • Guttman, D.S.1    Dykhuizen, D.E.2
  • 21
    • 0033959357 scopus 로고    scopus 로고
    • Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation
    • Majewski, J., Zawadzki, P., Pickerill, P., Cohan, F.M., and Dowson, C.G. 2000. Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation. Journal of Bacteriology 182: 1016-1023.
    • (2000) Journal of Bacteriology , vol.182 , pp. 1016-1023
    • Majewski, J.1    Zawadzki, P.2    Pickerill, P.3    Cohan, F.M.4    Dowson, C.G.5
  • 22
    • 0028870059 scopus 로고
    • Interspecies gene exchanges in bacteria: The role of SOS and mismatch repair systems in evolution of species
    • Matic, I., Rayssiguier, C., and Radman, M. 1995. Interspecies gene exchanges in bacteria: the role of SOS and mismatch repair systems in evolution of species. Cell 80: 507-515.
    • (1995) Cell , vol.80 , pp. 507-515
    • Matic, I.1    Rayssiguier, C.2    Radman, M.3
  • 25
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman, H., Lawrence, J.G., and Groisman, E.A. 2000. Lateral gene transfer and the nature of bacterial innovation. Nature 405: 299-304.
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 26
    • 0028055018 scopus 로고
    • The winds of (evolutionary) change: Breathing new life into microbiology
    • Olsen, G.J. Woese, C.R., and Overbeek, R. 1994. The winds of (evolutionary) change: breathing new life into microbiology. Journal of Bacteriology 176: 1-6.
    • (1994) Journal of Bacteriology , vol.176 , pp. 1-6
    • Olsen, G.J.1    Woese, C.R.2    Overbeek, R.3
  • 27
    • 0027323079 scopus 로고
    • Mismatch recognition in chromosomal interactions and speciation
    • Radman, M. and Wagner, R. 1993. Mismatch recognition in chromosomal interactions and speciation. Chromosoma 102: 369-373.
    • (1993) Chromosoma , vol.102 , pp. 369-373
    • Radman, M.1    Wagner, R.2
  • 28
    • 0029943741 scopus 로고    scopus 로고
    • Evidence that two genomic species of Rhizobium are associated with Medicago truncatula
    • Rome, S., Brunel, B., Normand, P., Fernandez, M., and Cleyet-Marel, J.-C. 1996a. Evidence that two genomic species of Rhizobium are associated with Medicago truncatula. Archives of Microbiology 165: 285-288.
    • (1996) Archives of Microbiology , vol.165 , pp. 285-288
    • Rome, S.1    Brunel, B.2    Normand, P.3    Fernandez, M.4    Cleyet-Marel, J.-C.5
  • 30
    • 0032978716 scopus 로고    scopus 로고
    • Networks and groups within the genus Neisseria: Analysis of argF, recA, rho, and 16S rRNA sequences from human Neisseria species
    • Smith, N.H., Holmes, E.C., Donovan, G.M., Carpenter, G.A., and Spratt, B.G. 1999. Networks and groups within the genus Neisseria: analysis of argF, recA, rho, and 16S rRNA sequences from human Neisseria species. Molecular Biology and Evolution 16: 773-783.
    • (1999) Molecular Biology and Evolution , vol.16 , pp. 773-783
    • Smith, N.H.1    Holmes, E.C.2    Donovan, G.M.3    Carpenter, G.A.4    Spratt, B.G.5
  • 32
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt, E. and Goebel, B.M. 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. International Journal of Systematic Microbiology 44: 846-849.
    • (1994) International Journal of Systematic Microbiology , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 38
    • 0000314099 scopus 로고
    • Ecological species, multispecies, and oaks
    • van Valen, L. 1976. Ecological species, multispecies, and oaks. Taxon 25: 233-239.
    • (1976) Taxon , vol.25 , pp. 233-239
    • Van Valen, L.1
  • 39
    • 0030977047 scopus 로고    scopus 로고
    • The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes
    • Wang, Y., Zhang, Z., and Ramanan, N. 1997. The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes. Journal of Bacteriology 179: 3270-3276.
    • (1997) Journal of Bacteriology , vol.179 , pp. 3270-3276
    • Wang, Y.1    Zhang, Z.2    Ramanan, N.3
  • 41
    • 0032835111 scopus 로고    scopus 로고
    • Distinct types of rRNA operons exist in the genome of the actinomycete Thermomonospora chromogena and evidence for horizontal transfer of an entire rRNA operon
    • Yap, W.H., Zhang, Z., and Wang, Y. 1999. Distinct types of rRNA operons exist in the genome of the actinomycete Thermomonospora chromogena and evidence for horizontal transfer of an entire rRNA operon. Journal of Bacteriology 181: 5201-5209.
    • (1999) Journal of Bacteriology , vol.181 , pp. 5201-5209
    • Yap, W.H.1    Zhang, Z.2    Wang, Y.3
  • 42
    • 0031018106 scopus 로고    scopus 로고
    • Interspecies recombination, and phylogenetic distortions, within the glutamine synthetase and shikimate dehydrogenase genes of Neisseria meningitidis and commensal Neisseria species
    • Zhou, J., Bowler, L.D., and Spratt, B.G. 1997. Interspecies recombination, and phylogenetic distortions, within the glutamine synthetase and shikimate dehydrogenase genes of Neisseria meningitidis and commensal Neisseria species. Molecular Microbiology 23: 799-812.
    • (1997) Molecular Microbiology , vol.23 , pp. 799-812
    • Zhou, J.1    Bowler, L.D.2    Spratt, B.G.3
  • 43
    • 0032930035 scopus 로고    scopus 로고
    • Mechanisms of horizontal gene transfer
    • Zgur-Bertok, D. 1999. Mechanisms of horizontal gene transfer (Review). Folia Biologica Prague 45: 91-96.
    • (1999) Folia Biologica Prague , vol.45 , pp. 91-96
    • Zgur-Bertok, D.1


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