Application of ITS sequence analysis, RAPD and AFLP fingerprinting in characterising the yeast genus Fellomyces

Microbiological Research

Volumn 160, Issue 1, 2005, Pages 13-26

  Lopandic, Ksenija ^a   Molnár, Orsolya ^a   Prillinger, Hansjörg ^a  

^a UNIVERSITY OF AGRICULTURAL SCIENCES   (Austria)

Author keywords

AFLP; Fellomyces; ITS sequences; Polymorphism; RAPD

Indexed keywords

BIODIVERSITY; GENES; GEOGRAPHICAL REGIONS; STRAIN;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM (AFLP); GENOTYPIC RELATIONSHIPS; LICHENS; PHYLOGENESIS;

YEAST;

LICHEN; MOLECULAR ANALYSIS; PHYLOGENETICS; POLYMORPHISM; YEAST;

ASIA; CHINA; EASTERN HEMISPHERE; EURASIA; FAR EAST; INDONESIA; MEXICO [NORTH AMERICA]; NORTH AMERICA; SOUTHEAST ASIA; WESTERN HEMISPHERE; WORLD;

FELLOMYCES;

EID: 13444278912     PISSN: 09445013     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.micres.2004.09.005     Document Type: Article

References (35)

1. A.O. Avrova, L.J. Hyman, R.L. Toth, and I.K. Toth Application of amplified fragment length polymorphism fingerprinting for taxonomy and identification of the soft rot bacteria Erwinia carotovora and Ervinia chrysanthemi Appl. Environ. Microbiol. 68 2002 1499 1508
2. J.A. Barnett, R.W. Payne, and D. Yarrow Yeasts Characteristics and Identification third ed 2000 Cambridge University Press Cambridge pp. 368-378
3. M.J. Blears, S.A. De Grandis, H. Lee, and J.T. Trevors Amplified fragment length polymorphism (AFLP) a review of the procedure and its application J. Industr. Microbiol. Biotechnol. 21 1998 99 114
4. M.A. De Barros Lopes, A. Soden, P.A. Henschke, and P. Langridge AFLP fingerprinting for analysis of yeast genetic variation Int. J. Syst. Bacteriol. 49 1999 915 924
5. B. Duim, T.M. Wassenaar, A. Rigter, and J. Wagenaar High-resolution genotyping of Campylobacter strains isolated from poultry and humans with amplified fragment length polymorphism fingerprinting Appl. Environ. Microbiol. 65 1999 2369 2375
6. J.W. Fell, T. Boekhout, A. Fonseca, G. Scorzetti, and A. Statzell-Tallman Biodiversity and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis Int. J. Syst. Evol. Microbiol. 50 2000 1351 1371
7. A. Gancheva, B. Pot, K. Vanhonacker, B. Hoste, and K. Kersters A polyphasic approach towards the identification of strains belonging to Lactobacillus acidophilus and related species Syst. Appl. Microbiol. 22 1999 573 585
8. E. Guého, C.P. Kurtzman, and S.W. Peterson Phylogenetic relationships among species of Sterigmatomyces and Fellomyces as determined from partial rRNA sequences Int. J. Syst. Bacteriol. 40 1990 60 65
9. G. Huys, and J. Swings Evaluation of a fluorescent amplified fragment length polymorphism (FAFLP) methodology for the genotypic discrimination of Aeromonas taxa FEMS Microbiol. Lett. 177 1999 83 92
10. R. Kirschner, J.P. Sampaio, M. Gadanho, M. Weiß, and F. Oberwinkler Cuniculitrema polymorpha (Tremellales, gen. nov. ans sp. nov.), a heterobasidiomycete vectored by bark beetles, which is the teleomorph of Sterigmatosporidium polymorphum Anton. Leeuw. 80 2001 149 161
11. K. Lopandic, H. Prillinger, O. Molnár, and G. Gimenez-Jurado Molecular characterisation and genotypic identification of Metschnikowia species Syst. Appl. Microbiol. 19 1996 339 402
12. K. Lopandic, T. Sugita, W.J. Middelhoven, M. Herzberg, J.W. Fell, S. Zelger, and H. Prillinger Trichosporon caseorum sp. nov. and Trichosporon lactis sp. nov., two basidiomycetous yeasts isolated from cheeses R. Agerer M. Piepenbring P. Blanz Frontiers in Basidiomycote Mycology 2004 IHW Verlag Eching 99 116
13. D. Majer, B.G. Lewis, and R. Mithen Genetic variation among field isolates of Pyrenopeziza brassicae Plant Pathol. 47 1998 22 28
14. R. Messner, H. Prillinger, F. Altmann, K. Lopandic, K. Wimmer, O. Molnár, and F. Weigang Molecular characterisation and application of random amplified polymorphic DNA analysis of Mrakia and Sterigmatomyces species Int. J. Syst. Bacteriol. 44 1994 694 703
15. O. Molnár, R. Messner, H. Prillinger, U. Stahl, and E. Slavikova Genotypic identification of Saccharomyces species using random amplified polymorphic DNA analysis Syst. Appl. Microbiol. 18 1995 136 145
16. O. Molnár, H. Prillinger, K. Lopandic, F. Weigang, and E. Staudacher Analysis of coenzyme Q systems, monosaccharide patterns of purified cell walls, and RAPD-PCR patterns in the genus Kluyveromyces Anton. Leeuw. 70 1996 67 78
17. T. Nakase Expanding world of ballistosporous yeasts distribution in the phyllosphere, systematics and phylogeny J. Gen. Appl. Microbiol. 46 2000 189 216
18. T. Nakase, M. Hamamoto, and J. Sugiyama Recent progress in the systematics of basidiomycetous yeasts Jpn. J. Med. Mycol. 32 1991 21 30
19. T. Nakase, A. Takematsu, and Y. Yamada Molecular approaches to the taxonomy of ballistosporous yeasts based on the analysis of the partial nucleotide sequences of 18S ribosomal ribonucleic acids J. Gen. Appl. Microbiol. 39 1993 107 134
20. O. Petrini, U. Hake, and M.M. Dreyfuss An analysis of fungal communities isolated from fruticose lichens Mycologia 82 1990 444 451
21. H. Prillinger, G. Kraepelin, K. Lopandic, W. Schweigkofler, O. Molnár, F. Weigang, and M.M. Dreyfuss New species of Fellomyces isolated from epiphytic lichen species Syst. Appl. Microbiol. 20 1997 572 584
22. P.H.M. Savelkoul, H.J.M. Aarts, J. De Haas, L. Dijkshoorn, B. Duim, M. Otsen, J.L.W. Rademaker, L. Schouls, and J.A. Lenstra Amplified-fragment length polymorphism analysis the state of an art J. Clin. Microbiol. 37 1999 3083 3091
23. G. Scorzetti, J.W. Fell, A. Fonseca, and A. Statzell-Tallman Systematics of basidiomycetous yeasts a comparison of large subunit D1/D2 and internal transcribed spacer rDNA regions FEMS Yeast Res. 2 2002 495 517
24. T. Sugita, A. Nishikawa, R. Ikeda, and T. Shinoda Identification of medically relevant Trichosporon species based on sequences of internal transcribed spacer regions and construction of a database for Trichosporon identification J. Clin. Microbiool. 37 1999 1985 1993
25. D.L. Swofford PAUP*, Phylogenetic Analysis Using Parsimony (*and other Methods). Version 4 2002 Sinauer Associates Sounderland, MA
26. B. Theelen, M. Silvestri, E. Guého, A. Van Belkum, and T. Boekhout Identification and typing of Malassezia yeasts using amplified fragment length polymorphism (AFLP™), random amplified polymorphic DNA (RAPD) and denaturing gradient gel electrophoresis (DGGE) FEMS Yeast Res. 1 2001 79 86
27. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins The ClustalX windows interface flexible strategies for multiple sequence alignments aided by quality analysis tools Nucl. Acids Res. 24 1997 4874 4882
28. P. Vos, R. Hogers, M. Bleeker, M. Reijans, T. van der Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper, and M. Zabeau AFLP a new technique for DNA fingerprinting Nucl. Acids Res. 23 1995 4407 4414
29. T.J. White, T.D. Bruns, S.B. Lee, and J.W. Taylor Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics M.A. Innis D.H. Gelfand J.J. Sninsky T.J. White PCR Protocols A Guide to Methods and Applications 1990 Academic Press New York 315 321
30. Y. Yamada, and I. Banno Fellomyces, a new anamorphic yeast genus for the Q-10-equipped organism whose conidium is freed by an end-break in the sterigma J. Gen. Appl. Microbiol. 30 1984 523 525
31. Y. Yamada, M. Itoh, H. Kawasaki, I. Banno, and T. Nakase Kurtzmanomyces, gen. nov., an anamorphic yeast genus for the Q10-equipped organism whose conidium is freed by an end-break in the sterigma which branches or elongates to produce additional conidia and whose cells contain no xylose J. Gen. Appl. Microbiol. 34 1988 503 506
32. Y. Yamada, H. Kawasaki, M. Itoh, I. Banno, and T. Nakase Tsuchiyaea gen. nov., an anamorphic yeast genus for the Q9-equipped organism whose reproduction is either by enteroblastic budding or by the formation of conida which are disjointed at septum in the mid-region of the sterigmata and whose cells contain xylose J. Gen. Appl. Microbiol. 34 1988 507 510
33. Y. Yamada, H. Kawasaki, T. Nakase, and I. Banno The phylogenetic relationship of the conidium-forming anamorphic yeast genera Sterigmatomyces, Kurtzmanomyces, Tsuchiyaea and Fellomyces, and teleomorphic yeast genus Sterigmatosporidium on the basis of the partial sequences of 18S and 26S ribosomal ribonucleic acids Agric. Biol. Chem. 53 1989 2993 3001
34. D. Yarrow Methods for the isolation, maintenance and identification of yeasts C.P. Kurtzman J.W. Fell The Yeasts, A Taxonomic Study fourth ed 1998 Elsevier Science B.V. Amsterdam 854 872
35. M. Zabeau, and P. Vos Selective Restriction Fragment Amplification A General Method for DNA Fingerprinting 1993 European Patent Office Munich, Germany EP 0 534 858