Photobacterium lipolyticum sp. nov., a bacterium with lipolytic activity isolated from the Yellow Sea in Korea

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 1, 2005, Pages 335-339

  Yoon, Jung Hoon ^a   Lee, Jung Kee ^a   Kim, Young Ok ^b   Oh, Tae Kwang ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^b National Fisheries Research and Development Institute (NFRDI)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; FATTY ACID; GUANINE; QUINONE DERIVATIVE; RNA 16S; SODIUM CHLORIDE;

ARTICLE; BACTERIAL GENOME; BACTERIAL GROWTH; BACTERIAL SPORE; BACTERIUM ISOLATION; CHEMOTAXONOMY; CLADISTICS; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; GC RICH SEQUENCE; GRAM NEGATIVE BACTERIUM; KOREA; LIPOLYSIS; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHOTOBACTERIUM; PHOTOBACTERIUM INDICUM; PHOTOBACTERIUM LIPOLYTICUM; PHOTOBACTERIUM PHOSPHOREUM; PRIORITY JOURNAL; RNA SEQUENCE; SEDIMENT; TEMPERATURE MEASUREMENT; VIBRIO FISCHERI; VIBRIONACEAE;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; GEOLOGIC SEDIMENTS; KOREA; LIPASE; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHOTOBACTERIUM; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); HYPHOMICROBIUM INDICUM; NEGIBACTERIA; PHOTOBACTERIUM; PHOTOBACTERIUM LIPOLYTICUM; PHOTOBACTERIUM PHOSPHOREUM; PHOTOBACTERIUM PROFUNDUM; VIBRIO FISCHERI;

EID: 13244251295     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63215-0     Document Type: Article

References (27)

1. Anzai, Y., Kim, H., Park, J.-Y., Wakabayashi, H. & Oyaizu, H. (2000). Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. Int J Syst Evol Microbiol 50, 1563-1589.
2. AL. In Bergey's Manual of Systematic Bacteriology, vol. 1, pp. 539-545. Edited by N. R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins.
3. Beijerinck, M. W. (1889). Le Photobacterium luminosum. Bactérie luminosum de la Mer Nord. Arch Néerl Sci 23, 401-427 (in French).
4. Boisvert, H., Chatelain, R. & Bassot, J.-M. (1967). Etude d'un Photobacterium isolé de l'organe lumineux de poissons Leiognathidae. Ann Inst Pasteur (Paris) 112, 520-524 (in French).
5. Bruns, A., Rohde, M. & Berthe-Corti, L. (2001). Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. Int J Syst Evol Microbiol 51, 1997-2006.
6. Cowan, S. T. & Steel, K. J. (1965). Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
7. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
8. Gauthier, G., Ruimy, L. R., Breittmayer, V., Nicolas, J. L., Gauthier, M. & Christen, R. (1995). Small-subunit rRNA sequences and whole DNA relatedness concur for the reassignment of Pasteurella piscicida (Snieszko et al.) Janssen and Surgalla to the genus Photobacterium as Photobacterium damsela subsp. piscicida comb. nov. Int J Syst Bacteriol 45, 139-144.
9. Komagata, K. & Suzuki, K. (1987). Lipids and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-203.
10. Lanyi, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19 1-67.
11. Lehmann, K. B. & Neumann, R. (1896). Atlas und Grundrise der Bakteriologie und Lehrbuch der speciellen bakteriologischen Diagnostik. Edited by J. F. Lehmann. München (in German).
12. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
13. Nogi, Y., Masui, N. & Kato, C. (1998). Photobacterium profundum sp. nov., a new, moderately barophilic bacterial species isolated from a deep-sea sediment. Extremophiles 2, 1-7.
14. Onarheim, A. M., Wiik, R., Burghardt, J. & Stackebrandt, E. (1994). Characterization and identification of two Vibrio species indigenous to the intestine of fish in cold sea water; description of Vibrio iliopiscarius sp. nov. Syst Appl Microbiol 17, 370-379.
15. Reichelt, J. L. & Baumann, P. (1973). Taxonomy of the marine, luminous bacteria. Arch Mikrobiol 94, 283-330.
16. Reichelt, J. L., Baumann, P. & Baumann, L. (1976). Study of genetic relationships among marine species of the genera Beneckea and Photobacterium. Arch Microbiol 110, 101-120.
17. Sasser, M. (1990). Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids. Newark, DE: MIDI.
18. Smith, S. K., Sutton, D. C., Fuerst, J. A. & Reichelt, J. L. (1991). Evaluation of the genus Listonella and reassignment of Listonella damsela (Love et al.) MacDonell and Colwell to the genus Photobacterium as Photobacterium damsela comb. nov. with an emended description. Int J Syst Bacteriol 41, 529-534.
19. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
20. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
21. Urakawa, H., Kita-Tsukamoto, K. & Ohwada, K. (1999). Reassessment of the taxonomic position of Vibrio iliopiscarius (Onarheim et al. 1994) and proposal for Photobacterium iliopiscarium comb. nov. Int J Syst Bacteriol 49, 257-260.
22. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
23. Xie, C.-H. & Yokota, A. (2004). Transfer of Hyphomicrobium indicum to the genus Photobacterium as Photobacterium indicum comb. nov. Int J Syst Evol Microbiol 54, 2113-2116.
24. Yoon, J.-H., Kim, H., Kim, S.-B., Kim, H.-J., Kim, W. Y., Lee, S. T., Goodfellow, M. & Park, Y.-H. (1996). Identification of Saccharomonospora strains by the use of genomic DNA fragments and rRNA gene probes. Int J Syst Bacteriol 46, 502-505.
25. Yoon, J.-H., Lee, S. T. & Park, Y.-H. (1998). Inter- and intra-specific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rDNA sequences. Int J Syst Bacteriol 48, 187-194.
26. Yoon, J.-H., Kim, I.-G., Kang, K. H., Oh, T.-K. & Park, Y.-H. (2003). Alteromonas marina sp. nov., isolated from sea water of the East Sea in Korea. Int J Syst Evol Microbiol 53, 1625-1630.
27. Yurkov, V., Stackebrandt, E., Holmes, A. & 7 other authors (1994). Phylogenetic positions of novel aerobic, bacteriochlorophyll a-containing bacteria and description of Roseococcus thiosulfatophilus gen. nov., sp. nov., Erythromicrobium ramosum gen. nov., sp. nov., and Erythrobacter litoralis sp. nov. Int J Syst Bacteriol 44, 427-434.