Intersurf: Dynamic interface between proteins

Journal of Molecular Graphics and Modelling

Volumn 23, Issue 4, 2005, Pages 347-354

  Ray, Nicolas ^a   Cavin, Xavier ^a   Paul, Jean Claude ^c   Maigret, Bernard ^b  

^a INRIA   (France)

^b NANCY UNIVERSITÉ   (France)

^c TSINGHUA UNIVERSITY   (China)

Author keywords

Interaction map; Interface extraction; Protein docking; Visualization

Indexed keywords

ALGORITHMS; COMPUTER SIMULATION; INTERFACES (MATERIALS); MAPS; SURFACES; VISUALIZATION;

BIOLOGICAL PROCESS; INTERFACE SURFACE; PROTEIN BOUNDARY; PROTEIN STRUCTURE;

PROTEINS;

PROTEIN;

ALGORITHM; ARTICLE; COMPUTER SIMULATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN INTERACTION; SURFACE PROPERTY;

ALGORITHMS; COMPUTATIONAL BIOLOGY; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN INTERACTION MAPPING; PROTEINS; SOFTWARE;

EID: 12844273672     PISSN: 10933263     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmgm.2004.11.004     Document Type: Article

References (9)

1. H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N. Shindyalov, and P.E. Bourne The protein data bank Nucleic Acids Res. 28 1 2000 235 242
2. I. Halperin, B. Ma, H. Wolfson, and R. Nussinov Principles of docking: an overview of search algorithms and a guide to scoring functions Proteins: Struct. Funct. Genet. 47 2002 409 443
3. R.R. Gabdoulline, and R.C. Wade Analytically defined surfaces to analyze molecular interaction properties J. Mol. Graph. 14 6 1996 341 353
4. R.R. Gabdoulline, R.C. Wade, and D. Walther MolSurfer: two dimensional maps for navigating three-dimensional structures of proteins Trends Biochem. Sci. 24 1999 285 287
5. M.W. Bern, D. Eppstein, Mesh generation and optimal triangulation, in: D.Z. Du, F.K.-M. Hwang (Eds.), Computing in Euclidean Geometry, Lecture Notes Series on Computing, Vol. 4, Second ed., World Scientific, 1995, pp. 47-123 (http://www.ics.uci.edu/~eppstein/pubs/BerEpp-CEG-95.pdf).
6. B. Levy, S. Petitjean, N. Ray, and J. Maillot Least squares conformal maps for automatic texture atlas generation Proceedings of the 29th Annual Conference on Computer Graphics and Interactive Techniques 2002 ACM Press
7. W. Humphrey, A. Dalke, and K. Schulten VMD - visual molecular dynamics J. Mol. Graph. 14 1996 33 38
8. R. Chen, J. Mintseris, J. Janin, and Z. Weng A protein-protein docking benchmark Proteins: Struct. Funct. Genet. 52 2003 88 91
9. N. Dyn, D. Levine, and J.A. Gregory A butterfly subdivision scheme for surface interpolation with tension ACM Transactions on Graphics 1990 ACM Press