Genetic potential for secondary metabolite production in stromatolite communities

FEMS Microbiology Letters

Volumn 243, Issue 1, 2005, Pages 293-301

  Burns, Brendan P ^a   Seifert, Alexander ^a   Goh, Falicia ^a   Pomati, Francesco ^a   Jungblut, Anne Dorothee ^a   Serhat, Alper ^a   Neilan, Brett A ^a  

^a UNIVERSITY OF NEW SOUTH WALES   (Australia)

Author keywords

Cyanobacteria; MALDI TOF; Peptide synthetase; Polyketide synthase; Stromatolites

Indexed keywords

AMINO ACID; ANTIBIOTIC AGENT; CYCLOPEPTIDE; ISOENZYME; PEPTIDE SYNTHASE; POLYKETIDE SYNTHASE; TOXIN;

ADENYLATION; AMINO ACID SEQUENCE; ARTICLE; AUSTRALIA; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; COMPUTER PROGRAM; CYANOBACTERIUM; GENETIC CODE; GENETIC SCREENING; LEPTOLYNGYBYA; MASS SPECTROMETRY; METABOLITE; MICROBIAL DIVERSITY; MICROBIAL GENETICS; MICROCOLEUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PLECTONEMA; PLEUROCAPSA; PREDICTION; PRIORITY JOURNAL; PROTEIN DOMAIN; SEQUENCE ANALYSIS; SYMPLOCA;

ANTI-BACTERIAL AGENTS; AUSTRALIA; BACTERIAL TOXINS; CYANOBACTERIA; ECOSYSTEM; GEOLOGIC SEDIMENTS; MOLECULAR SEQUENCE DATA; PEPTIDE SYNTHASES; PHYLOGENY; POLYKETIDE SYNTHASES; POLYMERASE CHAIN REACTION; SEAWATER; SEQUENCE ANALYSIS, DNA; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

CHONDRICHTHYES; CYANOBACTERIA; MICROCOLEUS; PLECTONEMA; PLECTONEMA SP.; SYMPLOCA;

EID: 12844266960     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsle.2004.12.019     Document Type: Article

References (36)

1. R.E. Moore Cyclic peptides and depsipeptides from cyanobacteria: a review J. Ind. Microbiol. 16 1996 134 143
2. M. Namikoshi, and K.L. Rinehart Bioactive compounds produced by cyanobacteria J. Ind. Microbiol. 17 1996 373 384
3. D. Panda, K. DeLuca, D. Williams, M.A. Jordan, and L. Wilson Antiproliferative mechanism of action of cryptophycin-52: kinetic stabilization of microtubule dynamics by high-affinity binding to microtubule ends Proc. Natl. Acad. Sci. USA 95 1998 9313 9318
4. C.D. Smith, X. Zhang, S.L. Mooberry, G.M. Patterson, and R.E. Moore Cryptophycin: a new antimicrotubule agent active against drug-resistant cells Cancer Res. 54 1994 3779 3784
5. A.V. Blokhin, H.D. Yoo, R.S. Geralds, D.G. Nagle, W.H. Gerwick, and E. Hamel Characterisation of the interaction of the marine cyanobacterial natural product curacin A with the colchicine site of tubulin and initial structure-activity studies with analogues Mol. Pharmacol. 48 1995 523 531
6. H. Luesch, W.Y. Yoshida, R.E. Moore, and V.J. Paul Lyngbyastatin 2 and norlyngbyastatin 2, analogues of dolastatin G and nordolastatin G from the marine cyanobacterium Lyngbya majuscula J. Nat. Prod. 62 1999 1702 1706
7. S.S. Mitchell, D.J. Faulkner, K. Rubins, and F.D. Bushman Dolastatin 3 and two novel cyclic peptides from a palauan collection of Lyngbya majuscula J. Nat. Prod. 63 2000 279 282
8. M.A. Marahiel, T. Stachelhaus, and H.D. Mootz Modular peptide synthetases involved in non-ribosomal peptide synthesis Mol. Gen. Genet. 97 1997 2651 2673
9. H. Kleinkauf, and H. von Döhren A nonribosomal system of peptide biosynthesis Eur. J. Biochem. 236 1996 335 351
10. D.E. Cane, and C.T. Walsh The parallel and convergent universes of polyketide synthases and nonribosomal peptide synthetases Chem. Biol. 6 1999 319 325
11. M.C. Moffitt, and B.A. Neilan The expansion of mechanistic and organismic diversity associated with non-ribosomal peptides FEMS Microbiol. Lett. 191 2000 159 167
12. B. Silakowski, H.U. Schairer, H. Ehret, B. Kunze, S. Weinig, G. Nordsiek, P. Brandt, H. Blocker, G. Hofle, S. Beyer, and R. Müller New lessons for combinatorial biosynthesis from myxobacteria. The myxothiazol biosynthetic gene cluster of Stigmatella aurantiaca DW4/3-1 J. Biol. Chem. 274 1999 37391 37399
13. B.P. Burns, F. Goh, M. Allen, and B.A. Neilan Microbial diversity of extant stromatolites in the hypersaline marine environment of Shark Bay, Australia Environ. Microbiol. 6 2004 1096 1101
14. K.J. McNamara, and S.M. Awramik Stromatolites: a key to understanding the early evolution of life Sci. Prog. Oxford 76 1992 345 364
15. B.A. Neilan, B.P. Burns, D. Relman, and D. Lowe Molecular identification of cyanobacteria associated with stromatolites from distinct geographical locations Astrobiology 2 2002 271 280
16. M.C. Moffitt, and B.A. Neilan On the presence of peptide synthetase and polyketide synthase genes in the cyanobacterial genus Nodularia FEMS Microbiol. Lett. 196 2001. 207 214
17. B.A. Neilan, E. Dittmann, L. Rouhiainen, R.A. Bass, V. Schaub, K. Sivonen, and T. Börner Nonribosomal peptide synthesis and toxigenicity of cyanobacteria J. Bacteriol. 181 1999 4089 4097
18. T.H. Jukes, and C.R. Cantor H.N. Munro Mammalian Protein Metabolism 1969 Academic Press Inc. New York 21 132
19. G.L. Challis, J. Ravel, and C.A. Townsend Predictive, structure-based model of amino acid recognition by nonribosomal peptide synthetase adenylation domains Chem. Biol. 7 2000 211 224
20. C. Jakobi, L. Oberer, C. Quiquerez, W.A. König, and J. Weckesser Cyanopeptolin S, a sulfate-containing depsipeptide from a water bloom of Microcystis sp FEMS Microbial Lett. 129 1995 129 134
21. S.S. Mitchell, D.J. Faulkner, K. Rubins, and F.D. Bushman Dolastatin 3 and two novel cyclic peptides from a Palauan collection of Lyngbya majuscula J. Nat. Prod. 63 2000 279 282
22. W.W. Carmichael The toxins of cyanobacteria Sci. Am. 270 1994 780 786
23. E. Dittmann, B.A. Neilan, and T. Börner Molecular biology of peptide and polyketide biosynthesis in cyanobacteria Appl. Microbiol. Biotechnol. 57 2001 467 473
24. Z. Chang, P. Flatt, W.H. Gerwick, V.A. Nguyen, C.L. Willis, and D.H. Sherman The barbamide biosynthetic gene cluster: a novel marine cyanobacterial system of mixed polyketide synthase (PKS)-non-ribosomal peptide synthetase (NRPS) origin involving an unusual trichloroleucyl starter unit Gene 296 2002 235 247
25. T. Cavalier-Smith Origins of secondary metabolism Ciba Found. Symp. 171 1992 64 80
26. J.T. Baker, R.P. Borris, B. Carte, G.A. Cordell, D.D. Soejarto, G.M. Cragg, M.P. Gupta, M.M. Iwu, D.R. Madulid, and V.E. Tyler Natural product drug discovery and development: new perspectives on international collaboration J. Nat. Prod. 58 1995. 1325 1357
27. G. Christiansen, E. Dittman, L. Ordorika, R. Rippka, M. Herdman, and T. Börner Nonribosomal peptide synthetase genes occur in most cyanobacterial genera as evidenced by their distribution in axenic strains of the PCC Arch. Microbiol. 176 2001 452 458
28. B.P. Burns, F. Pomati, F. Goh, and B.A. Neilan Big genes, small molecules - the molecular basis for toxicity and biosynthesis of natural products in cyanobacteria Mar. Biotechnol. 6 2004 S1 S5
29. B. Silakowski, B. Kunze, and R. Müller Multiple hybrid polyketide synthase/non-ribosomal peptide synthetase gene clusters in the myxobacterium Stigmatella aurantiaca Gene 275 2001 233 240
30. D. Tillett, D.L. Parker, and B.A. Neilan Detection of toxigenicity by a probe for the microcystin synthetase A gene (mcyA) of the cyanobacterial genus Microcystis: comparison of toxicities with 16S rRNA and phycocyanin operon (Phycocyanin Intergenic Spacer) phylogenies Appl. Environ. Microbiol. 67 2001 2810 2818
31. D. Tillett, E. Dittmann, M. Erhard, H. von Dohren, T. Borner, and B.A. Neilan Structural organization of microcystin biosynthesis in Microcystis aeruginosa PCC7806: an integrated peptide-polyketide synthetase system Chem. Biol. 7 2000 753 764
32. A. Rantala, D.P. Fewer, M. Hisbergues, L. Rouhiainen, J. Vaitomaa, T. Borner, and K. Sivonen Phylogenetic evidence for the early evolution of microcystin synthesis Proc. Natl. Acad. Sci. USA 101 2004 568 573
33. E.H. Duitman, L.W. Hamoen, M. Rembold, G. Venema, H. Seitz, W. Saenger, F. Bernhard, R. Reinhardt, M. Schmidt, C. Ullrich, T. Stein, F. Leenders, and J. Vater The mycosubtilin synthetase of Bacillus subtilis ATCC6633: a multifunctional hybrid between a peptide synthetase, an amino transferase, and a fatty acid synthase Proc. Natl. Acad. Sci. USA 96 1999 13294 13299
34. J.A. Eisen, and C.M. Fraser Phylogenomics: intersection of evolution and genomics Science 300 2003 1706 1707
35. A.M. Burja, B. Banaigs, E. Abou-Mansour, J.G. Burgess, and P.C. Wright Marine cyanobacteria - a prolific source of natural products Tetrahedron 57 2001 9347 9377
36. P.D. Siebert, A. Chenchik, D.E. Kellogg, K.A. Lukyanov, and S.A. Lukyanov An improved PCR method for walking in uncloned genomic DNA Nucleic Acids Res. 23 1995 1087 1088