-
1
-
-
84860083968
-
-
http://hmmer.wustl.edu
-
-
-
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W, Myers, E.W., Lipman, D.J. Basic Local Alignment Search Tool, Journal of Molecular Biology 215, 403-410 (1990)
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0038519367
-
Parallel biological sequence comparison using prefix computations
-
Aluru, S., Fuamura, N., Mehrotra, K. Parallel Biological Sequence Comparison using Prefix Computations, Journal of Parallel and Distributed Computing, 63, 264-272 (2003)
-
(2003)
Journal of Parallel and Distributed Computing
, vol.63
, pp. 264-272
-
-
Aluru, S.1
Fuamura, N.2
Mehrotra, K.3
-
4
-
-
0011542799
-
The PFAM protein families database
-
Bateman, A., Birney, E., Cerutti, L., Durbin, R., Etwiller, L., Eddy, S.R., Griffith-Jones, S., Howe, K.L. Marshall, M., Sonnhammer, E. The PFAM Protein Families Database, Nucleic Acids Research 30, 276-280 (2002)
-
(2002)
Nucleic Acids Research
, vol.30
, pp. 276-280
-
-
Bateman, A.1
Birney, E.2
Cerutti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
Griffith-Jones, S.7
Howe, K.L.8
Marshall, M.9
Sonnhammer, E.10
-
5
-
-
0034566410
-
Small subunit ribosomal RNA modeling using stochastic context-free grammars
-
Brown, M.P. Small Subunit Ribosomal RNA Modeling using Stochastic Context-Free Grammars, Proceedings ISMB'00, 57-66 (2000)
-
(2000)
Proceedings ISMB'00
, pp. 57-66
-
-
Brown, M.P.1
-
6
-
-
0037251969
-
The ribosomal database project (RDP-II): Previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
-
Cole, J.R., Chai, B, Marsh, T.L., Farris, R.J., Wang, Q., Kulam, S.A., Chandra, S., McGarrell, D.M., Schmidt, T.M., Garrity, G.M., Tiedje, J.M. The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy, Nucleic Acids Research 31, 442-443 (2003)
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 442-443
-
-
Cole, J.R.1
Chai, B.2
Marsh, T.L.3
Farris, R.J.4
Wang, Q.5
Kulam, S.A.6
Chandra, S.7
McGarrell, D.M.8
Schmidt, T.M.9
Garrity, G.M.10
Tiedje, J.M.11
-
7
-
-
0003516147
-
-
Cambridge University Press
-
Durbin, R., Eddy., S.R., Krogh, A., Mitchison, G. Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids, Cambridge University Press (1998)
-
(1998)
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
-
-
Durbin, R.1
Eddy, S.R.2
Krogh, A.3
Mitchison, G.4
-
8
-
-
2942607685
-
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
-
Eddy, S.R. A Memory-Efficient Dynamic Programming Algorithm for Optimal Alignment of a Sequence to an RNA Secondary Structure, BMC Bioinformatics 3:18 (2002)
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 18
-
-
Eddy, S.R.1
-
10
-
-
0006323024
-
Parallel processing of biological sequence comparison algorithms
-
Edmiston, E.W., Core, N.G., Saltz, J.H., Smith, R.M. Parallel Processing of Biological Sequence Comparison Algorithms, Journal of Parallel Programming 17 259-275 (1988)
-
(1988)
Journal of Parallel Programming
, vol.17
, pp. 259-275
-
-
Edmiston, E.W.1
Core, N.G.2
Saltz, J.H.3
Smith, R.M.4
-
11
-
-
0037252684
-
RFAM: An RNA family database
-
Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna A., Eddy S.R. RFAM: an RNA family database, Nucleic Acids Research 31, 439-441 (2003)
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 439-441
-
-
Griffiths-Jones, S.1
Bateman, A.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
-
12
-
-
0026187099
-
Applications of Stochastic Context-Free Grammars using the Inside-Outside Algorithm
-
Lari, K., Young, S.J. Applications of Stochastic Context-Free Grammars using the Inside-Outside Algorithm, Computer Speech and Languages 5, 237-257 (1991)
-
(1991)
Computer Speech and Languages
, vol.5
, pp. 237-257
-
-
Lari, K.1
Young, S.J.2
-
13
-
-
0031750905
-
A polyhedral approach to RNA sequence structure alignment
-
Lenhof, H.P., Reinert, K., Vingron, M. A polyhedral approach to RNA sequence structure alignment, Journal of Computational Biology 5, 517-530 (1998)
-
(1998)
Journal of Computational Biology
, vol.5
, pp. 517-530
-
-
Lenhof, H.P.1
Reinert, K.2
Vingron, M.3
-
14
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequences
-
Lowe, T., Eddy, S.R. tRNAscan-SE: a Program for Improved Detection of Transfer RNA genes in Genomic Sequences, Nucleic Acids Research 25, 955-964 (1997)
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 955-964
-
-
Lowe, T.1
Eddy, S.R.2
-
16
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson, W.R., Lipman, D.J. Improved Tools for Biological Sequence Comparison, Proc. Natl. Acad. Sci. 4, 2444-2448 (1988)
-
(1988)
Proc. Natl. Acad. Sci.
, vol.4
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
17
-
-
0003157183
-
Noncoding RNA gene detection using comparative sequence analysis
-
Rivas, E., Eddy S.R. Noncoding RNA gene detection using comparative sequence analysis, BMC Bioinformatics 2(1), 8-27 (2001)
-
(2001)
BMC Bioinformatics
, vol.2
, Issue.1
, pp. 8-27
-
-
Rivas, E.1
Eddy, S.R.2
-
18
-
-
0028593508
-
Stochastic context-free grammars for tRNA modeling
-
Sakakibara, Y., Brown, M., Hughey, R., Mian, I.S., Sjolander, K., Underwood, R.C., Haussler, D. Stochastic Context-Free Grammars for tRNA modeling, Nucleic Acids Research 22, 5112-5120 (1994)
-
(1994)
Nucleic Acids Research
, vol.22
, pp. 5112-5120
-
-
Sakakibara, Y.1
Brown, M.2
Hughey, R.3
Mian, I.S.4
Sjolander, K.5
Underwood, R.C.6
Haussler, D.7
-
19
-
-
12444312935
-
Massively parallel solutions for molecular sequence analysis, 1st international workshop on high performance computational biology
-
Schmidt, B., Schroder, H., Schimmler, M. Massively Parallel Solutions for Molecular Sequence Analysis, 1st International Workshop on High Performance Computational Biology, in Proc. IPDPS'02 (2002)
-
(2002)
Proc. IPDPS'02
-
-
Schmidt, B.1
Schroder, H.2
Schimmler, M.3
-
20
-
-
0037123632
-
An expanding universe of noncoding RNAs
-
Storz, G. An expanding universe of noncoding RNAs, Science 296, 1260-1263 (2002)
-
(2002)
Science
, vol.296
, pp. 1260-1263
-
-
Storz, G.1
-
21
-
-
0027968068
-
ClustalW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties, and weight matrix choice
-
Thompson, J.D., Higgins, Gibson, T.J. ClustalW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties, and weight matrix choice, Nucleic Acids Research 22, 4673-4680 (1994)
-
(1994)
Nucleic Acids Research
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins2
Gibson, T.J.3
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