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Volumn 18, Issue , 2004, Pages 2663-2670

Parallel RNA sequence-structure alignment

Author keywords

[No Author keywords available]

Indexed keywords

COVARIANCE MODEL (CM); HIDDEN MARKOV MODELS (HMM); PERFORMANCE EVALUATION; STOCHASTIC CONTEXT-FREE GRAMMARS (SCFG);

EID: 12444271079     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (3)

References (21)
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    • 84860083968 scopus 로고    scopus 로고
    • http://hmmer.wustl.edu
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    • 0034566410 scopus 로고    scopus 로고
    • Small subunit ribosomal RNA modeling using stochastic context-free grammars
    • Brown, M.P. Small Subunit Ribosomal RNA Modeling using Stochastic Context-Free Grammars, Proceedings ISMB'00, 57-66 (2000)
    • (2000) Proceedings ISMB'00 , pp. 57-66
    • Brown, M.P.1
  • 8
    • 2942607685 scopus 로고    scopus 로고
    • A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
    • Eddy, S.R. A Memory-Efficient Dynamic Programming Algorithm for Optimal Alignment of a Sequence to an RNA Secondary Structure, BMC Bioinformatics 3:18 (2002)
    • (2002) BMC Bioinformatics , vol.3 , pp. 18
    • Eddy, S.R.1
  • 12
    • 0026187099 scopus 로고
    • Applications of Stochastic Context-Free Grammars using the Inside-Outside Algorithm
    • Lari, K., Young, S.J. Applications of Stochastic Context-Free Grammars using the Inside-Outside Algorithm, Computer Speech and Languages 5, 237-257 (1991)
    • (1991) Computer Speech and Languages , vol.5 , pp. 237-257
    • Lari, K.1    Young, S.J.2
  • 14
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequences
    • Lowe, T., Eddy, S.R. tRNAscan-SE: a Program for Improved Detection of Transfer RNA genes in Genomic Sequences, Nucleic Acids Research 25, 955-964 (1997)
    • (1997) Nucleic Acids Research , vol.25 , pp. 955-964
    • Lowe, T.1    Eddy, S.R.2
  • 16
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson, W.R., Lipman, D.J. Improved Tools for Biological Sequence Comparison, Proc. Natl. Acad. Sci. 4, 2444-2448 (1988)
    • (1988) Proc. Natl. Acad. Sci. , vol.4 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 17
    • 0003157183 scopus 로고    scopus 로고
    • Noncoding RNA gene detection using comparative sequence analysis
    • Rivas, E., Eddy S.R. Noncoding RNA gene detection using comparative sequence analysis, BMC Bioinformatics 2(1), 8-27 (2001)
    • (2001) BMC Bioinformatics , vol.2 , Issue.1 , pp. 8-27
    • Rivas, E.1    Eddy, S.R.2
  • 19
    • 12444312935 scopus 로고    scopus 로고
    • Massively parallel solutions for molecular sequence analysis, 1st international workshop on high performance computational biology
    • Schmidt, B., Schroder, H., Schimmler, M. Massively Parallel Solutions for Molecular Sequence Analysis, 1st International Workshop on High Performance Computational Biology, in Proc. IPDPS'02 (2002)
    • (2002) Proc. IPDPS'02
    • Schmidt, B.1    Schroder, H.2    Schimmler, M.3
  • 20
    • 0037123632 scopus 로고    scopus 로고
    • An expanding universe of noncoding RNAs
    • Storz, G. An expanding universe of noncoding RNAs, Science 296, 1260-1263 (2002)
    • (2002) Science , vol.296 , pp. 1260-1263
    • Storz, G.1
  • 21
    • 0027968068 scopus 로고
    • ClustalW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties, and weight matrix choice
    • Thompson, J.D., Higgins, Gibson, T.J. ClustalW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties, and weight matrix choice, Nucleic Acids Research 22, 4673-4680 (1994)
    • (1994) Nucleic Acids Research , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins2    Gibson, T.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.