Cation-π Interactions as Determinants for Binding of the Compatible Solutes Glycine Betaine and Proline Betaine by the Periplasmic Ligand-binding Protein ProX from Escherichia coli

Journal of Biological Chemistry

Volumn 279, Issue 7, 2004, Pages 5588-5596

  Schiefner, André ^a   Breed, Jason ^a,c   Bösser, Linda ^b   Kneip, Susanne ^b   Gade, Jutta ^b   Holtmann, Gudrun ^b   Diederichs, Kay ^a   Welte, Wolfram ^a   Bremer, Erhard ^b  

^a UNIVERSITY OF KONSTANZ   (Germany)

^b PHILIPPS UNIVERSITY MARBURG   (Germany)

^c ASTRAZENECA   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ESCHERICHIA COLI; HYDRATION; MUTAGENESIS; PROTEINS;

COMPATIBLE SOLUTES; OSMOLARITY;

BIOCHEMISTRY;

ABC TRANSPORTER; BACTERIAL PROTEIN; BETAINE; CATION; GLYCINE; PROLINE; TRYPTOPHAN;

ARTICLE; BINDING AFFINITY; BINDING SITE; CONTROLLED STUDY; CYTOPLASM; ESCHERICHIA COLI; HYDRATION; LIGAND BINDING; MOLECULAR INTERACTION; NONHUMAN; OSMOLARITY; PRIORITY JOURNAL; PROTEIN STABILITY; SITE DIRECTED MUTAGENESIS; SOLUTE; WATER LOSS;

AMINO ACID MOTIFS; AMINO ACID SEQUENCE; BETAINE; BINDING SITES; BIOCHEMISTRY; CARBON; CATIONS; CRYSTALLOGRAPHY, X-RAY; DISULFIDES; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; LIGANDS; MEMBRANE TRANSPORT PROTEINS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; MUTATION; PERIPLASMIC BINDING PROTEINS; PROLINE; PROTEIN BINDING; PROTEIN CONFORMATION; SEQUENCE HOMOLOGY, AMINO ACID; TRYPTOPHAN;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA;

EID: 1242339645     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M309771200     Document Type: Article

References (82)

1. Kempf, B., and Bremer, E. (1998) Arch. Microbiol. 170, 319-330
2. Booth, I. R., and Louis, P. (1999) Curr. Opin. Microbiol. 2, 166-169
3. Brown, A. D. (1976) Bacteriol. Rev. 40, 803-846
4. Csonka, L. N., and Hanson, A. D. (1991) Annu. Rev. Microbiol. 45, 569-606
5. Galinski, E. A., and Trüper, H. G. (1994) FEMS Microbiol. Rev. 15, 95-108
6. Bremer, E., and Krämer, R. (2000) in Bacterial Stress Responses (Storz, G., and Hengge-Aronis, R., eds) pp. 79-97, American Society for Microbiology Press, Washington, D. C.
7. Welsh, D. T. (2000) FEMS Microbiol. Rev. 24, 263-290
8. Wood, J. M. (1999) Microbiol. Mol. Biol. Rev. 63, 230-262
9. Record, M. T., Jr., Courtenay, E. S., Cayley, D. S., and Guttman, H. J. (1998) Trends Biochem. Sci. 23, 143-148
10. Lippert, K., and Galinski, A. A. (1992)Appl. Microbiol. Biotechnol. 37, 61-65
11. Caldas, T., Demont-Caulet, N., Ghazi, A., and Richarme, G. (1999) Microbiology 145, 2543-2548
12. Canovas, D., Borges, N., Vargas, C., Ventosa, A., Nieto, J. J., and Santos, H. (1999) Appl. Environ. Microbiol. 65, 3774-3779
13. Bourot, S., Sire, O., Trautwetter, A., Touze, T., Wu, L. F., Blanco, C., and Bernard, T. (2000) J. Biol. Chem. 275, 1050-1056
14. Canovas, D., Fletcher, S. A., Hayashi, M., and Csonka, L. N. (2001) J. Bacteriol. 183, 3365-3371
15. Mendum, M. L., and Smith, L. T. (2002) Appl. Environ. Microbiol. 68, 813-819
16. Da Costa, M. S., Santos, H., and Galinski, E. A. (1998) Adv. Biochem. Eng. Biotechnol. 61, 117-153
17. Roberts, M. F. (2000) Front. Biosci. 5, 796-812
18. Burg, M., Kwon, E., and Kültz, D. (1997) Annu. Rev. Physiol. 59, 437-455
19. Rhodes, D., and Hanson, A. D. (1993) Annu. Rev. Plant Physiol. Plant Mol. Biol. 44, 357-384
20. Hohmann, S. (2002) Int. Rev. Cytol. 215, 149-187
21. Le Rudulier, D., Strøm, A. R., Dandekar, A. M., Smith, L. T., and Valentine, R. C. (1984) Science 224, 1064-1068
22. Yancey, P. H. (1994) in Cellular and Molecular Physiology of Cell Volume Regulation (Strange, K., ed) pp. 81-109, CRC Press, Inc., Boca Raton, FL
23. Arakawa, T., and Timasheff, S. N. (1985) Biochem. J. 47, 411-414
24. Qu, Y., Bolen, C. L., and Bolen, D. W. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 9268-9273
25. Bolen, D. W., and Baskakov, I. V. (2001) J. Mol. Biol. 310, 955-963
26. Lehmann, M. S., and Zaccai, G. (1984) Biochemistry 23, 1939-1942
27. Csonka, L. N., and Epstein, W. (1996) in Escherichia coli and Salmonella. Cellular and Molecular Biology (Neidhard, F. C., Curtiss, R., III, Ingraham, J. L., Lin, E. C. C., Low, K. B., Magasanik, B., Reznikoff, W. S., Riley, M., Schaechter, M., and Umbarger, H. E., eds) Vol. 1, pp. 1210-1223, American Society for Microbiology Press, Washington, D. C.
28. Sleator, R. D., and Hill, C. (2002) FEMS Microbiol. Rev. 26, 49-71
29. Perroud, B., and Le Rudulier, D. (1985) J. Bacteriol. 161, 393-401
30. Lucht, J. M., and Bremer, E. (1994) FEMS Microbiol. Lett. 14, 3-20
31. Culham, D. E., Lasby, B., Marangoni, A. G., Milner, J. L., Steer, B. A., van Nues, R. W., and Wood, J. M. (1993) J. Mol. Biol. 229, 268-276
32. May, G., Faatz, E., Villarejo, M., and Bremer, E. (1986) Mol. Gen. Genet. 205, 225-233
33. Gowrishankar, J. (1989) J. Bacteriol. 171, 1923-1931
34. Higgins, C. F. (1992) Annu. Rev. Cell Biol. 8, 67-113
35. Boos, W., and Lucht J. M. (1996) in Escherichia coli and Salmonella. Cellular and Molecular Biology (Neidhard, F. C., Curtiss, R., III, Ingraham, J. L., Lin, E. C. C., Low, K. B., Magasanik, B., Reznikoff, W. S., Riley, M., Schaechter, M., and Umbarger, H. E., eds) pp. 1175-1209, American Society for Microbiology Press, Washington, D. C.
36. Faatz, E., Middendorf, A., and Bremer, E. (1988) Mol. Microbiol. 2, 265-279
37. Barron, A., Jung, J. U., and Villarejo M. (1987) J. Biol. Chem. 262, 11841-11846
38. Haardt, M., Kempf, B., Faatz, E., and Bremer, E. (1995) Mol. Gen. Genet. 246, 783-786
39. Fetsch, E. E., and Davidson, A. L. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 9685-9690
40. Jebbar, M., Talibart, R., Gloux, K., Bernard, T., and Blanco, C. (1992) J. Bacteriol. 174, 5027-5035
41. Magnusson, U., Chaudhuri, B. N., Ko, J., Park, C., Jones, A., and Mowbray, S. L. (2002) J. Biol. Chem. 277, 14077-14084
42. Björkman, A. J., and Mowbray, S. L. (1998) J. Mol. Biol. 279, 651-664
43. Higgins, C. F., Sutherland, L., Cairney, J., and Booth, I. R. (1987) J. Gen. Microbiol. 133, 305-310
44. Breed, J., Kneip, S., Gade, J., Welte, W., and Bremer, E. (2001) Acta Crystallogr. Sect. D Biol. Crystallogr. 57, 448-450
45. Dulaney, E. L., Dulaney, D. D., and Rickes, E. L. (1968) Dev. Ind. Microbiol. 9, 260-269
46. Neu, H. C., and Heppel, L. A. (1965) J. Biol. Chem. 240, 3685-3692
47. Silhavy, T. J., Berman, M. L., and Enquist, L. W. (1984) Experiments with Gene Fusions, pp. 18-27, Cold Spring Harbor Laboratories, Cold Spring Harbor, NY
48. Diederichs, K., and Karplus, P. A. (1997) Nat. Struct. Biol. 4, 269-275
49. Bremer, E., Silhavy, T. J., and Weinstock, G. M. (1988) Gene (Amst.) 71, 177-186
50. Weiss, M. S., and Hilgenfeld, R. (1997) J. Appl. Crystallogr. 30, 203-205
51. Sanger, F., Nicklen, S., and Coulson, A. R. (1977) Proc. Natl. Acad. Sci. U. S. A. 74, 5463-5467
52. Richarme, G., and Kepes, A. (1983) Biochim. Biophys. Acta 742, 16-24
53. Kabsch, W. (1993) J. Appl. Crystallogr. 26, 795-800
54. Terwilliger, T. C., and Berendzen, J. (1999) Acta Crystallogr. Sect. D Biol. Crystallogr. 55, 849-861
55. Cowtan, K. (1994) Joint CCP4 and ESF-EACBM Newslett. Protein Crystallogr. 31, 34-38
56. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. Sect. A 47, 110-119
57. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. Sect. D Biol. Crystallogr. 53, 240-255
58. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291
59. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950
60. Esnouf, R. M. (1997) J. Mol. Graph. Model. 15, 132-134
61. Merrit, E. A., and Bacon, D. J. (1997) Methods Enzymol. 277, 505-524
62. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990) J. Mol. Biol. 215, 403-410
63. Quiocho, F. A., and Ledvina, P. S. (1996) Mol. Microbiol. 20, 17-25
64. Clarke, T. E., Ku, S.-Y., Dougan, D. R., Vogel, H. J., and Tari, L. W. (2000) Nat. Struct. Biol. 7, 287-291
65. Borths, E. L., Locher, K. P., Lee, A. T., and Rees, D. C. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 16642-16647
66. Berman, H. M., Westbrock, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N., and Bourne, P. E. (2000) Nucleic Acids Res. 28, 235-242
67. Li, A.-J., and Nussinov, R. (1998) Proteins 32, 111-127
68. Momma, K., Mikami, B., Mishima, Y., Hashimoto, W., and Murata, K. (2002) J. Mol. Biol. 316, 1051-1059
69. Harel, M., Schalk, I., Ehret-Sabatier, L., Bouet, F., Goeldner, M., Hirth, C., Axelsen, P. H., Silman, I., and Sussman, J. L. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 9031-9035
70. Felder, C. E., Harel, M., Silman, I., and Sussman, J. L. (2002) Acta Crystallogr. Sect. D Biol. Crystallogr. 58, 1765-1771
71. Ripoli, D. R., Faerman, C. H., Axelsen, P. H., Silman, I., and Sussman, J. L. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 5128-5132
72. Roderick, S. L., Chan, W. W., Agate, D. S., Olsen, L. R., Vetting, M. W., Rajashankar, K. R., and Cohen, D. E. (2002) Nat. Struct. Biol. 9, 507-511
73. Jacobs, S. A., and Khorasanizadeh, S. (2002) Science 295, 2080-2083
74. Kleywegt, G. J., and Jones, T. A. (1994) Joint CCP4 and ESF-EACBM Newslett. Protein Crystallogr. 31, 9-14
75. Lee, J. C., and Timasheff, S. N. (1981) J. Biol. Chem. 256, 7193-7201
76. Timasheff, S. N. (1993) Annu. Rev. Biophys. Biol. Struct. 22, 67-97
77. Kendrick, B. S., Chang, B. S., Arakawa, T., Peterson, B., Randolph, T. W., Manning, M. C., and Carpenter, J. F. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 11917-11922
78. Minton, A. P. (2001) J. Biol. Chem. 276, 10577-10580
79. Mecozzi, S., West, A. P., Jr., and Dougherty, D. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 10566-10571
80. Zhong, W., Gallivan, J. P., Zhang, Y., Li, L., Lester, H. A., and Dougherty, D. A. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 12088-150202
81. Brejc, K., van Dijk, W. J., Klaassen, R. V., Schuurmans, M., van der Oost, J., Smit, A. B., and Sixma, T. K. (2001) Nature 411, 269-276
82. Kabsch, W., and Sander, C. (1983) Biopolymers 22, 2577-2637