메뉴 건너뛰기




Volumn 83, Issue 3, 2004, Pages 384-394

Isochore structures in the mouse genome

Author keywords

Compositional homogeneity; Genome organization; MHC sequence; Mouse genome; Windowless technique

Indexed keywords

ARTICLE; CENTROMERE; DNA SEQUENCE; GENE SEQUENCE; GENETIC VARIABILITY; GENOME; ISOCHORE; MAJOR HISTOCOMPATIBILITY COMPLEX; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; QUANTITATIVE GENETICS; RAT; SEQUENCE ANALYSIS; TELOMERE;

EID: 1242338884     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ygeno.2003.09.011     Document Type: Article
Times cited : (19)

References (38)
  • 1
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Waterston R.H.et al. Initial sequencing and comparative analysis of the mouse genome. Nature. 420:2002;520-562.
    • (2002) Nature , vol.420 , pp. 520-562
    • Waterston, R.H.1
  • 2
    • 0017173987 scopus 로고
    • An approach to the organization of eukaryotic genomes at a macromolecular level
    • Macaya G., Thiery J.P., Bernardi G. An approach to the organization of eukaryotic genomes at a macromolecular level. J. Mol. Biol. 108:1976;237-254.
    • (1976) J. Mol. Biol. , vol.108 , pp. 237-254
    • MacAya, G.1    Thiery, J.P.2    Bernardi, G.3
  • 3
    • 0019470162 scopus 로고
    • The major components of the mouse and human genomes. 1. Preparation, basic properties and compositional heterogeneity
    • Cuny G., Soriano P., Macaya G., Bernardi G. The major components of the mouse and human genomes. 1. Preparation, basic properties and compositional heterogeneity. Eur. J. Biochem. 115:1981;227-233.
    • (1981) Eur. J. Biochem. , vol.115 , pp. 227-233
    • Cuny, G.1    Soriano, P.2    MacAya, G.3    Bernardi, G.4
  • 4
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander E.S.et al. Initial sequencing and analysis of the human genome. Nature. 409:2001;860-921.
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1
  • 5
    • 0034755052 scopus 로고    scopus 로고
    • A novel method to calculate the G+C content of genomic DNA sequences
    • Zhang C.T., Wang J., Zhang R. A novel method to calculate the G+C content of genomic DNA sequences. J. Biomol. Struct. Dyn. 19:2001;333-341.
    • (2001) J. Biomol. Struct. Dyn. , vol.19 , pp. 333-341
    • Zhang, C.T.1    Wang, J.2    Zhang, R.3
  • 6
    • 0026059039 scopus 로고
    • Analysis of distribution of bases in the coding sequences by a diagrammatic technique
    • Zhang C.T., Zhang R. Analysis of distribution of bases in the coding sequences by a diagrammatic technique. Nucleic Acids Res. 19:1991;6313-6317.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 6313-6317
    • Zhang, C.T.1    Zhang, R.2
  • 7
    • 0027995001 scopus 로고
    • Z curves, an intuitive tool for visualizing and analyzing the DNA sequences
    • Zhang R., Zhang C.T. Z curves, an intuitive tool for visualizing and analyzing the DNA sequences. J. Biomol. Struct. Dyn. 11:1994;767-782.
    • (1994) J. Biomol. Struct. Dyn. , vol.11 , pp. 767-782
    • Zhang, R.1    Zhang, C.T.2
  • 8
    • 0022881598 scopus 로고
    • Gene distribution and nucleotide sequence organization in the mouse genome
    • Salinas J., Zerial M., Filipski J., Bernardi G. Gene distribution and nucleotide sequence organization in the mouse genome. Eur. J. Biochem. 160:1986;469-478.
    • (1986) Eur. J. Biochem. , vol.160 , pp. 469-478
    • Salinas, J.1    Zerial, M.2    Filipski, J.3    Bernardi, G.4
  • 9
    • 0023765518 scopus 로고
    • The compositional distribution of coding sequences and DNA molecules in humans and murids
    • Mouchiroud D., Gautier C., Bernardi G. The compositional distribution of coding sequences and DNA molecules in humans and murids. J. Mol. Evol. 27:1988;311-320.
    • (1988) J. Mol. Evol. , vol.27 , pp. 311-320
    • Mouchiroud, D.1    Gautier, C.2    Bernardi, G.3
  • 10
    • 0012914683 scopus 로고    scopus 로고
    • An isochore map of the human genome based on the Z curve method
    • (In press)
    • Zhang C.T., Zhang R. An isochore map of the human genome based on the Z curve method. Gene. 2003;. (In press).
    • (2003) Gene
    • Zhang, C.T.1    Zhang, R.2
  • 11
    • 0037196423 scopus 로고    scopus 로고
    • Isochore conservation between MHC regions on human chromosome 6 and mouse chromosome 17
    • Pavlicek A., Clay O., Jabbari K., Paces J., Bernardi G. Isochore conservation between MHC regions on human chromosome 6 and mouse chromosome 17. FEBS Lett. 511:2002;175-177.
    • (2002) FEBS Lett. , vol.511 , pp. 175-177
    • Pavlicek, A.1    Clay, O.2    Jabbari, K.3    Paces, J.4    Bernardi, G.5
  • 12
    • 0029587471 scopus 로고
    • The human genome: Organization and evolutionary history
    • Bernardi G. The human genome: organization and evolutionary history. Annu. Rev. Genet. 29:1995;445-776.
    • (1995) Annu. Rev. Genet. , vol.29 , pp. 445-776
    • Bernardi, G.1
  • 13
    • 0030603239 scopus 로고    scopus 로고
    • The gene distribution of the human genome
    • Zoubak S., Clay O., Bernardi G. The gene distribution of the human genome. Gene. 174:1996;95-102.
    • (1996) Gene , vol.174 , pp. 95-102
    • Zoubak, S.1    Clay, O.2    Bernardi, G.3
  • 14
    • 0030917145 scopus 로고    scopus 로고
    • Precise switching of DNA replication timing in the GC content transition area in the human major histocompatibility complex
    • Tenzen T.et al. Precise switching of DNA replication timing in the GC content transition area in the human major histocompatibility complex. Mol. Cell. Biol. 17:1997;4043-4050.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 4043-4050
    • Tenzen, T.1
  • 15
    • 0027135889 scopus 로고
    • Macromolecular domains within the cell nucleus
    • Spector D.L. Macromolecular domains within the cell nucleus. Annu. Rev. Cell. Biol. 9:1993;265-315.
    • (1993) Annu. Rev. Cell. Biol. , vol.9 , pp. 265-315
    • Spector, D.L.1
  • 16
    • 0030724031 scopus 로고    scopus 로고
    • Compartmentalization of eukaryotic gene expression: Causes and effects
    • Singer R.H., Green M.R. Compartmentalization of eukaryotic gene expression: causes and effects. Cell. 91:1997;291-294.
    • (1997) Cell , vol.91 , pp. 291-294
    • Singer, R.H.1    Green, M.R.2
  • 17
    • 0029952583 scopus 로고    scopus 로고
    • Intron-dependent recruitment of pre-mRNA splicing factors to sites of transcription
    • Huang S., Spector D.L. Intron-dependent recruitment of pre-mRNA splicing factors to sites of transcription. J. Cell Biol. 133:1996;719-732.
    • (1996) J. Cell Biol. , vol.133 , pp. 719-732
    • Huang, S.1    Spector, D.L.2
  • 18
    • 0035895502 scopus 로고    scopus 로고
    • The human transcriptome map: Clustering of highly expressed genes in chromosomal domains
    • Caron H.et al. The human transcriptome map: clustering of highly expressed genes in chromosomal domains. Science. 291:2001;1289-1292.
    • (2001) Science , vol.291 , pp. 1289-1292
    • Caron, H.1
  • 19
    • 0037202366 scopus 로고    scopus 로고
    • Expression patterns and gene distribution in the human genome
    • D'Onofrio G. Expression patterns and gene distribution in the human genome. Gene. 300:2002;155-160.
    • (2002) Gene , vol.300 , pp. 155-160
    • D'Onofrio, G.1
  • 20
    • 0010314873 scopus 로고
    • The distribution of interspersed repeats is nonuniform and conserved in the mouse and human genomes
    • Soriano P., Meunier-Rotival M., Bernardi G. The distribution of interspersed repeats is nonuniform and conserved in the mouse and human genomes. Proc. Natl. Acad. Sci. USA. 80:1983;1816-1820.
    • (1983) Proc. Natl. Acad. Sci. USA , vol.80 , pp. 1816-1820
    • Soriano, P.1    Meunier-Rotival, M.2    Bernardi, G.3
  • 21
    • 0343804994 scopus 로고
    • Sequence organization and genomic distribution of the major family of interspersed repeats of mouse DNA
    • Meunier-Rotival M., Soriano P., Cuny G., Strauss F., Bernardi G. Sequence organization and genomic distribution of the major family of interspersed repeats of mouse DNA. Proc. Natl. Acad. Sci. USA. 79:1982;355-359.
    • (1982) Proc. Natl. Acad. Sci. USA , vol.79 , pp. 355-359
    • Meunier-Rotival, M.1    Soriano, P.2    Cuny, G.3    Strauss, F.4    Bernardi, G.5
  • 22
    • 0027136190 scopus 로고
    • Correlations between isochores and chromosomal bands in the human genome
    • Saccone S.et al. Correlations between isochores and chromosomal bands in the human genome. Proc. Natl. Acad. Sci. USA. 90:1993;11929-11933.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 11929-11933
    • Saccone, S.1
  • 23
    • 0026771276 scopus 로고
    • The highest gene concentrations in the human genome are in telomeric bands of metaphase chromosomes
    • Saccone S., De Sario A., Della Valle G., Bernardi G. The highest gene concentrations in the human genome are in telomeric bands of metaphase chromosomes. Proc. Natl. Acad. Sci. USA. 89:1992;4913-4917.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 4913-4917
    • Saccone, S.1    De Sario, A.2    Della Valle, G.3    Bernardi, G.4
  • 24
    • 0028963020 scopus 로고
    • Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores
    • Duret L., Mouchiroud D., Gautier C. Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores. J. Mol. Evol. 40:1995;308-317.
    • (1995) J. Mol. Evol. , vol.40 , pp. 308-317
    • Duret, L.1    Mouchiroud, D.2    Gautier, C.3
  • 26
    • 0033804748 scopus 로고    scopus 로고
    • An isochore transition in the NF1 gene region coincides with a switch in the extent of linkage disequilibrium
    • Eisenbarth I., Vogel G., Krone W., Vogel W., Assum G. An isochore transition in the NF1 gene region coincides with a switch in the extent of linkage disequilibrium. Am. J. Hum. Genet. 67:2000;873-880.
    • (2000) Am. J. Hum. Genet. , vol.67 , pp. 873-880
    • Eisenbarth, I.1    Vogel, G.2    Krone, W.3    Vogel, W.4    Assum, G.5
  • 27
    • 0034989085 scopus 로고    scopus 로고
    • Local rates of recombination are positively correlated with GC content in the human genome
    • Fullerton S.M., Bernardo Carvalho A., Clark A.G. Local rates of recombination are positively correlated with GC content in the human genome. Mol. Biol. Evol. 18:2001;1139-1142.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1139-1142
    • Fullerton, S.M.1    Bernardo Carvalho, A.2    Clark, A.G.3
  • 29
    • 0035802384 scopus 로고    scopus 로고
    • Delineating relative homogeneous G+C domains in DNA sequences
    • Li W. Delineating relative homogeneous G+C domains in DNA sequences. Gene. 276:2001;57-72.
    • (2001) Gene , vol.276 , pp. 57-72
    • Li, W.1
  • 30
    • 0035984483 scopus 로고    scopus 로고
    • Applications of recursive segmentation to the analysis of DNA sequences
    • Li W., Bernaola-Galvan P., Haghighi F., Grosse I. Applications of recursive segmentation to the analysis of DNA sequences. Comput. Chem. 26:2002;491-510.
    • (2002) Comput. Chem. , vol.26 , pp. 491-510
    • Li, W.1    Bernaola-Galvan, P.2    Haghighi, F.3    Grosse, I.4
  • 32
    • 0033499841 scopus 로고    scopus 로고
    • Segmentation of yeast DNA using hidden Markov models
    • Peshkin L., Gelfand M.S. Segmentation of yeast DNA using hidden Markov models. Bioinformatics. 15:1999;980-986.
    • (1999) Bioinformatics , vol.15 , pp. 980-986
    • Peshkin, L.1    Gelfand, M.S.2
  • 33
    • 0034806988 scopus 로고    scopus 로고
    • No isochores in the human chromosomes 21 and 22?
    • Haring D., Kypr J. No isochores in the human chromosomes 21 and 22? Biochem. Biophys. Res. Commun. 280:2001;567-573.
    • (2001) Biochem. Biophys. Res. Commun. , vol.280 , pp. 567-573
    • Haring, D.1    Kypr, J.2
  • 34
    • 0034809869 scopus 로고    scopus 로고
    • The isochores in human chromosomes 21 and 22
    • Clay O., Bernardi G. The isochores in human chromosomes 21 and 22. Biochem. Biophys. Res. Commun. 285:2001;855-856.
    • (2001) Biochem. Biophys. Res. Commun. , vol.285 , pp. 855-856
    • Clay, O.1    Bernardi, G.2
  • 35
    • 0035802410 scopus 로고    scopus 로고
    • Misunderstandings about isochores. Part 1
    • Bernardi G. Misunderstandings about isochores. Part 1. Gene. 276:2001;3-13.
    • (2001) Gene , vol.276 , pp. 3-13
    • Bernardi, G.1
  • 37
    • 0037202386 scopus 로고    scopus 로고
    • Are isochore sequences homogeneous?
    • Li W. Are isochore sequences homogeneous? Gene. 300:2002;129-139.
    • (2002) Gene , vol.300 , pp. 129-139
    • Li, W.1
  • 38
    • 0037196383 scopus 로고    scopus 로고
    • A compact view of isochores in the draft human genome sequence
    • Pavlicek A., Paces J., Clay O., Bernardi G. A compact view of isochores in the draft human genome sequence. FEBS Lett. 511:2002;165-169.
    • (2002) FEBS Lett. , vol.511 , pp. 165-169
    • Pavlicek, A.1    Paces, J.2    Clay, O.3    Bernardi, G.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.