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Volumn 21, Issue 1, 2004, Pages 86-89

Quartet Mapping and the Extent of Lateral Transfer in Bacterial Genomes

Author keywords

Bacterial phylogeny; Lateral gene transfer; Maximum likelihood; Quartet trees

Indexed keywords

ARTICLE; BACTERIAL GENETICS; BACTERIAL GENOME; EVOLUTION; GENE MAPPING; GENE TRANSFER; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROKARYOTE; TAXON;

EID: 1242284664     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msg234     Document Type: Article
Times cited : (20)

References (22)
  • 1
    • 0030207565 scopus 로고    scopus 로고
    • Instability of quartet analyses of molecular sequence data by the maximum likelihood method: The Cetacea/Artiodactyla relationships
    • Adachi, J., and M. Hasegawa. 1996. Instability of quartet analyses of molecular sequence data by the maximum likelihood method: the Cetacea/Artiodactyla relationships. Mol. Phylogenet. Evol. 6:72-76.
    • (1996) Mol. Phylogenet. Evol. , vol.6 , pp. 72-76
    • Adachi, J.1    Hasegawa, M.2
  • 3
    • 0036137155 scopus 로고    scopus 로고
    • Eubacterial phylogeny based on translational apparatus proteins
    • Brochier, C., E. Bapteste, D. Moreira, and H. Philippe. 2002. Eubacterial phylogeny based on translational apparatus proteins. Trends Genet. 18:1-5.
    • (2002) Trends Genet. , vol.18 , pp. 1-5
    • Brochier, C.1    Bapteste, E.2    Moreira, D.3    Philippe, H.4
  • 4
    • 0034565944 scopus 로고    scopus 로고
    • The evolutionary history of ribosomal protein RpS14: Horizontal gene transfer at the heart of the ribosome
    • Brochier, C., H. Philippe, and D. Moreira. 2000. The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome. Trends Genet. 16:529-533.
    • (2000) Trends Genet. , vol.16 , pp. 529-533
    • Brochier, C.1    Philippe, H.2    Moreira, D.3
  • 6
    • 0036061865 scopus 로고    scopus 로고
    • A phylogenomic approach to bacterial phylogeny: Evidence of a core of genes sharing a common history
    • Daubin, V., M. Gouy, and G. Perriere. 2002. A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history. Genome Res. 12:1080-1090.
    • (2002) Genome Res. , vol.12 , pp. 1080-1090
    • Daubin, V.1    Gouy, M.2    Perriere, G.3
  • 7
    • 0042027842 scopus 로고    scopus 로고
    • Phylogenetics and the cohesion of bacterial genome
    • Daubin, V., N. Moran, and H. Ochman. 2003. Phylogenetics and the cohesion of bacterial genome. Science 301:829-832.
    • (2003) Science , vol.301 , pp. 829-832
    • Daubin, V.1    Moran, N.2    Ochman, H.3
  • 9
    • 0033669672 scopus 로고    scopus 로고
    • Horizontal gene transfer among microbial genomes: New insights from complete genome analysis
    • Eisen, J. A. 2000. Horizontal gene transfer among microbial genomes: new insights from complete genome analysis. Curr. Opin. Genet. Dev. 10:606-611.
    • (2000) Curr. Opin. Genet. Dev. , vol.10 , pp. 606-611
    • Eisen, J.A.1
  • 10
    • 0029976603 scopus 로고    scopus 로고
    • Using CLUSTAL for multiple sequence alignments
    • Higgins, D. G., J. D. Thompson, and T. J. Gibson. 1996. Using CLUSTAL for multiple sequence alignments. Methods Enzymol. 266:383-402.
    • (1996) Methods Enzymol. , vol.266 , pp. 383-402
    • Higgins, D.G.1    Thompson, J.D.2    Gibson, T.J.3
  • 11
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: The complexity hypothesis
    • Jain, R., M. C. Rivera, and J. A. Lake. 1999. Horizontal gene transfer among genomes: the complexity hypothesis. Proc. Natl. Acad. Sci. USA 96:3801-3806.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 3801-3806
    • Jain, R.1    Rivera, M.C.2    Lake, J.A.3
  • 12
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea
    • Kishino, H., and M. Hasegawa. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea. J. Mol. Evol. 2:170-179.
    • (1989) J. Mol. Evol. , vol.2 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 13
    • 0034152569 scopus 로고    scopus 로고
    • Molecular phylogeny: Pitfalls and progress
    • Moreira, D., and H. Philippe. 2000. Molecular phylogeny: pitfalls and progress. Int. Microbiol. 3:9-16.
    • (2000) Int. Microbiol. , vol.3 , pp. 9-16
    • Moreira, D.1    Philippe, H.2
  • 14
    • 0034831587 scopus 로고    scopus 로고
    • Defining the core of nontransferable prokaryotic genes: The euryarchaeal core
    • Nesbo, C. L., Y. Boucher, and W. F. Doolittle. 2001. Defining the core of nontransferable prokaryotic genes: the euryarchaeal core. J. Mol. Evol. 53:340-350.
    • (2001) J. Mol. Evol. , vol.53 , pp. 340-350
    • Nesbo, C.L.1    Boucher, Y.2    Doolittle, W.F.3
  • 15
    • 0034942558 scopus 로고    scopus 로고
    • Quartet-mapping, a generalization of the likelihood-mapping procedure
    • Nieselt-Struwe, K., and A. von Haeseler. 2001. Quartet-mapping, a generalization of the likelihood-mapping procedure. Mol. Biol. Evol. 18:1204-1219.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1204-1219
    • Nieselt-Struwe, K.1    Von Haeseler, A.2
  • 16
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman, H., J. G. Lawrence, and E. A. Groisman. 2000. Lateral gene transfer and the nature of bacterial innovation. Nature 405:299-305.
    • (2000) Nature , vol.405 , pp. 299-305
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 17
    • 0000909802 scopus 로고
    • The pitfalls of molecular phylogeny based on four species as illustrated by the Cetacea/Artiodactyla relationships
    • Philippe, H., and E. Douzery. 1994. The pitfalls of molecular phylogeny based on four species as illustrated by the Cetacea/Artiodactyla relationships. J. Mam. Evol. 2:133-152.
    • (1994) J. Mam. Evol. , vol.2 , pp. 133-152
    • Philippe, H.1    Douzery, E.2
  • 18
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira, H., and M. Hasegawa. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16:1114-1116.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 19
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
    • Strimmer, K., and A. von Haeseler. 1996. Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13:964-969.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 20
    • 0031002417 scopus 로고    scopus 로고
    • Likelihood-mapping: A simple method to visualize phylogenetic content of a sequence alignment
    • -. 1997. Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment. Proc. Natl. Acad. Sci. USA 94:6815-6819.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 6815-6819
  • 21
    • 9144225618 scopus 로고    scopus 로고
    • Bootstrap, Bayesian probability and maximum likelihood mapping: Exploring new tools for comparative genome analyses
    • Zhaxybayeva, O., and J. P. Gogarten. 2002. Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses. BMC Genomics 3:4.
    • (2002) BMC Genomics , vol.3 , pp. 4
    • Zhaxybayeva, O.1    Gogarten, J.P.2
  • 22
    • 0036699481 scopus 로고    scopus 로고
    • Increased taxon sampling greatly reduces phylogenetic error
    • Zwickl, D. J., and D. M. Hillis. 2002. Increased taxon sampling greatly reduces phylogenetic error. Syst Biol. 51:588-598.
    • (2002) Syst. Biol. , vol.51 , pp. 588-598
    • Zwickl, D.J.1    Hillis, D.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.