Determination of the Glycosidic Bond Angle χ in RNA from Cross-Correlated Relaxation of CH Dipolar Coupling and N Chemical Shift Anisotropy

Journal of the American Chemical Society

Volumn 126, Issue 7, 2004, Pages 1962-1970

  Duchardt, Elke ^a,b   Richter, Christian ^a   Ohlenschläger, Oliver ^a,c   Görlach, Matthias ^a,c   Wöhnert, Jens ^a   Schwalbe, Harald ^a  

^a GOETHE UNIVERSITY   (Germany)

^b MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^c FRITZ LIPMANN INSTITUTE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ANISOTROPY; CONFORMATIONS; NUCLEAR MAGNETIC RESONANCE; RELAXATION PROCESSES; RNA; TENSORS;

CHEMICAL SHIFTS; PARAMETERIZATION;

CHEMICAL BONDS;

GLYCOSIDE;

ANALYTIC METHOD; ANISOTROPY; ARTICLE; CHEMICAL BOND; COUPLING FACTOR; DRUG DETERMINATION; PROTON NUCLEAR MAGNETIC RESONANCE; QUANTITATIVE ANALYSIS; RNA STRUCTURE; SOLID STATE;

ANISOTROPY; FOURIER ANALYSIS; GLYCOSIDES; MODELS, CHEMICAL; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; NUCLEIC ACID CONFORMATION; RNA;

EID: 1242274605     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja0367041     Document Type: Article

References (45)

1. Batey, R. T.; Inada, M.; Kujawinski, E.; Puglisi, J. D.; Williamson, J. R. Nucleic Acids Res. 1992, 20, 4515-4523.
2. Batey, R. T.; Battiste, J. L.; Williamson, J. R. Methods Enzymol. 1995, 261, 300-322.
3. Nikonowicz, E. P.; Sirr, A.; Legault, P.; Jucker, F. M.; Baer, L. M.; Pardi, A. Nucleic Acids Res. 1992, 20, 4507-4513.
4. Varani, G.; Aboul-ela, F.; Allain, F. H.-T. Prog. Nucl. Magn. Reson. Spectrosc. 1996, 29, 51-127.
5. Varani, G.; Tinoco, I., Jr. Q. Rev. Biophys. 1991, 24, 479-532.
6. Cromsigt, J.; van Buuren, B.; Schleucher, J.; Wijmenga, S. S. Methods Enzymol. 2001, 338, 371-399.
7. Wijmenga, S. S.; Mooren, M. M. W.; Hilbers, C. W. NMR of Macromolecules; Oxford University Press: New York, 1995; pp 217-288.
8. Schwalbe, H.; Marino, J. P.; King, G. C.; Wechselberger, R.; Bermel, W.; Griesinger, C. J. Biomol. NMR 1994, 4, 631-644.
9. Trantirek, L.; Stefl, R.; Masse, J. E.; Feigon, J.; Sklenar, V. J. Biomol. NMR 2002, 23, 1-12.
10. Munzarova, M.; Sklenar, V. J. Am. Chem. Soc. 2003, 125, 3649-3658.
11. Reif, B.; Hennig, M.; Griesinger, C. Science 1997, 276, 1230-1233.
12. Schwalbe, H.; Carlomagno, T.; Hennig, M.; Junker, J.; Reif, B.; Richter, C.; Griesinger, C. Methods Enzymol. 2001, 338, 35-81.
13. Carlomagno, T.; Blommers, M. J.; Meiler, J.; Cuenoud, B.; Griesinger, C. J. Am. Chem. Soc. 2001, 123, 7364-7370.
14. Boisbouvier, J.; Bax, A. J. Am. Chem. Soc. 2002, 124, 11038-11045.
15. Riek, R. J. Magn. Reson. 2001, 149, 149-153.
16. Bertini, I.; Kowalewski, J.; Luchinat, C.; Parigi, G. J. Magn. Reson. 2001, 152, 103-108.
17. Banci, L.; Bertini, I.; Felli, I. C.; Hajieva, P.; Viezzoli, M. S. J. Biomol. NMR 2001, 20, 1-10.
18. Vincent, S. J. F.; Zwahlen, C. J. Am. Chem. Soc. 2000, 122, 8307-8308.
19. Zwahlen, C.; Vincent, S. J. F. J. Am. Chem. Soc. 2002, 124, 7235-7239.
20. Ilin, S.; Bosques, C.; Turner, C.; Schwalbe, H. Angew. Chem. 2003, 115, 1394-1397.
21. Ravindranathan, S.; Kim, C.-H.; Bodenhausen G. J. Biomol. NMR 2003, 27, 365-375.
22. Stueber, D.; Grant, D. M. J. Am. Chem. Soc. 2002, 124, 10539-10551.
23. Kumar, A.; Grace, R. C. R.; Madhu, P. K. Prog. Nucl. Magn. Reson. Spectrosc. 2000, 37, 191-319.
24. Dajaegere, A. P.; Case, D. A. J. Phys. Chem. A 1998, 102, 5280-5289.
25. Fiala, R.; Czernek, J.; Sklenar, V. J. Biomol. NMR 2000, 16, 291-302.
26. Ban N.; Nissen, P.; Hansen, J.; Moore, P. B.; Steitz, T. A. Science 2000, 289, 878-879.
27. Stoldt, M.; Wöhnert, J.; Görlach, M.; Brown, L. R. EMBO J. 1998, 17, 6377-6384.
28. Emsley, L.; Bodenhausen, G. J. Magn. Reson. 1992, 97, 135-148.
29. Geen, H.; Freeman, R. J. Magn. Reson. 1991, 95, 93-141.
30. Shaka, A. J.; Barker, P. B.; Freeman, R. J. Magn. Reson. 1985, 64, 547-552.
31. Marion, D.; Ikura, M.; Tschudin, R.; Bax, A. J. Magn. Reson. 1989, 89, 496-514.
32. Sklenar, V.; Peterson, R. D.; Rejante, M. R.; Feigon, J. J. Biomol. NMR 1993, 3, 721-727.
33. Farmer. B. T., II: Muller, L.; Nikonowicz, E. P.; Pardi, A. J. Biomol. NMR 1994, 4, 129-133.
34. Marino, J. P.; Diener, J. L.; Moore, P. B.; Griesinger, C. J. Am. Chem. Soc. 1997, 119, 7361-7366.
35. Sklenar, V.; Dieckmann, T.; Butcher, S. E.; Feigon, J. J. Magn. Reson. 1998, 130, 119-124.
36. Brutscher, B.; Simorre, J.-P. J. Biomol. NMR 2001, 21, 367-372.
37. Felli, I. C.; Richter, C.; Griesinger, C.; Schwalbe, H. J. Am. Chem. Soc. 1999, 121, 1956-1957.
38. Grzesiek, S.; Bax, A. J. Biomol. NMR 1995, 6, 335-339.
39. Allain, F. H.; Varani, G. J. Mol. Biol. 1995, 250, 333-353.
40. Ennifar, E.; Nikulin, A.; Tishchenko, S.; Serganov, A.; Nevskaya, N.; Garber, M.; Ehresmann, B.; Ehresmann, C.; Nikonov, S.; Dumas, P. J. Mol. Biol. 2000, 304, 35-42.
41. Ohlenschläger, O.: Wöhnert, J.; Bucci, E.; Seitz, S.; Häfner, S.; Ramachandran, R.; Zell. R.; Görlach, M. Structure, in press.
42. Güntert, P.; Mumenthaler, C.; Wüthrich, K. J. Mol. Biol. 1997, 273, 283-298.
43. Tjandra, N.; Szabo, A.; Bax, A. J. Am. Chem. Soc. 1996, 118, 6986-6991.
44. Fushman, D.; Cowburn, D. J. Am. Chem. Soc. 1998, 120, 7109-7110.
45. Boyd, J.; Redfield, C. J. Am. Chem. Soc. 1999, 121, 7441-7442.