Different molecular methods for the identification of rarely isolated non-tuberculous mycobacteria and description of new hsp65 restriction fragment length polymorphism patterns

Molecular and Cellular Probes

Volumn 18, Issue 1, 2004, Pages 59-65

  Häfner, Bernhard ^a   Haag, Heike ^a   Geiss, Heinrich Konrad ^a   Nolte, Oliver ^a  

^a UNIVERSITY OF HEIDELBERG   (Germany)

Author keywords

16S rRNA gene; hsp65 pattern; Molecular differentiation; Non tuberculous mycobacteria; PRA; Sequence data

Indexed keywords

BACTERIAL PROTEIN; DNA 16S; HEAT SHOCK PROTEIN 65;

ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CONTROLLED STUDY; DATA ANALYSIS; MOLECULAR PROBE; MYCOBACTERIUM; MYCOBACTERIUM BOHEMICUM; MYCOBACTERIUM GORDONAE; MYCOBACTERIUM HASSIACUM; MYCOBACTERIUM HECKESHORNENSE; MYCOBACTERIUM INTERJECTUM; MYCOBACTERIUM MONACENSE; MYCOBACTERIUM MUCOGENICUM; MYCOBACTERIUM PARAFFINICUM; MYCOBACTERIUM SCROFULACEUM; MYCOBACTERIUM TRIPLEX; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN VARIANT; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEQUENCE ANALYSIS; STANDARDIZATION;

CORYNEBACTERINEAE; MYCOBACTERIUM; MYCOBACTERIUM BOHEMICUM; MYCOBACTERIUM GORDONAE; MYCOBACTERIUM HASSIACUM; MYCOBACTERIUM HECKESHORNENSE; MYCOBACTERIUM INTERJECTUM; MYCOBACTERIUM MONACENSE; MYCOBACTERIUM MUCOGENICUM; MYCOBACTERIUM PARAFFINICUM; MYCOBACTERIUM SCROFULACEUM; MYCOBACTERIUM TRIPLEX;

EID: 1242273718     PISSN: 08908508     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mcp.2003.09.003     Document Type: Article

References (23)

1. Covert T.C., Rodgers M.R., Reyes A.L., Stelma G.N. Occurence of nontuberculous mycobacteria in environmental samples. Appl Environ Microbiol. 65:1999;2492-2496.
2. Patel J.B., Leonard D.G.B., Pan X., Musser J.M., Berman R.E., Nachamkin I. Sequence-based identification of mycobacterium species using the MicroSeq 500 16S rDNA bacterial identification system. J Clin Microbiol. 38:2000;246-251.
3. Turenne C.Y., Tschetter L., Wolfe J., Kabani A. Necessity of quality-controlled 16S rRNA gene sequence databases: identifying nontuberculous Mycobacterium species. J Clin Microbiol. 39:2001;3637-3648.
4. Dostal S, Bergmann M, Richter E, Roth A, Niemann S, Harmsen D. http://www.ridom-rdna.de/mycobacteria .
5. Harmsen D., Rothgänger J., Singer C., Albert J., Frosch M. Intuitive hypertext-based molecular identification of micro-organisms. Lancet. 353:1999;291.
6. Ringuet H., Akoua-Koffi C., Honore, et al. hsp65 sequencing for identification of rapidly growing mycobacteria. J Clin Microbiol. 37:1999;852-857.
7. Telenti A., Marchesi F., Balz M., Bally F., Boettger E.C., Bodmer T. Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis. J Clin Microbiol. 31:1993;175-178.
8. Devallois A., Goh K.S., Rastogi N. Rapid identification of Mycobacteria to the species level by PCR-restriction fragment length polymorphism analysis of the hsp65 gene and proposition of an algorithm to differentiate 34 mycobacterial species. J Clin Microbiol. 35:1997;2969-2973.
9. Brunello F., Ligozzi M., Cristelli E., Bonora S., Tortoli E., Fontana R. Identification of 54 mycobacterial species by PCR-restriction fragment length polymorphism analysis of the hsp65 gene. J Clin Microbiol. 39:2001;2799-2806.
10. da Silva Rocha A., Werneck Barreto A.M., Dias Campos C.E., et al. Novel allelic variants of Mycobacteria isolated in Brazil as determined by PCR-restriction enzyme analysis of hsp65. J Clin Microbiol. 40:2002;4191-4196.
11. Deutsches Institut für Normung. Medizinische Mikrobiologie und Immunologie, Diagnostische Verfahren. Berlin: Beuth Verlag; 2000. p. 3-47, 140-9.
12. Lane L. 16S/23S sequencing. Stackebrandt W., Goodfellow. Nucleic acid techniques in bacterial systematics. 1991;115-176 Wiley, Chichester.
13. da Silva Rocha A., da Costa Leite C., Margarinos Torres H., et al. Use of PCR-restriction fragment length polymorphism analysis of the hsp65 gene for rapid identification of mycobacteria in Brazil. J Clin Microbiol. 37:1999;223-229.
14. Shojaei H., Goodfellow M., Magee J.G., Freeman R., Gould F.K., Brignall C.G. Mycobacterium novocastrense sp. nov., a rapidly growing photochromogenic mycobacterium. Int J Systematic Bacteriol. 47:1997;1205-1207.
15. Turenne C., Chedore P., Wolfe J., et al. Mycobacterium lacus sp. nov., a novel slowly growing, non-chromogenic clinical isolate. Int J Systematic Evol Microbiol. 52:2002;2135-2140.
16. Richter E., Niemann S., Gloeckner F.O., Pfyffer G.E., Rüsch-Gerdes S. Mycobacterium holsaticum sp. nov. Int J Systematic Evol Microbiol. 52:2002;1991-1996.
17. Levy M.H., Bartell J., Gandolfo L., et al. Characterisation of Mycobacterium montefiorense sp. nov., a novel pathogenic Mycobacterium from Moray Eels that is related to Mycobacterium triplex. J Clin Microbiol. 41:2003;2147-2152.
18. Leclerc M.C., Haddad N., Moreau R., Thorel M.F. Molecular characterization of environmental mycobacterium strains by PCR-restriction fragment length polymorphism of hsp65 and by sequencing of hsp65, and of 16S and IST 1 rDNA. Res Microbiol. 151:2000;629-638.
19. Kim B.-J., Lee S.-H., Lyu M.-A., et al. Identification of mycobacterial species by comparative sequence analysis of the RNA polymerase gene (rpoB). J Clin Microbiol. 37:1999;1714-1720.
20. Legrand E., Goh K.S., Sola C., Rastogi N. Description of a novel Mycobacterium simiae allelic variant isolated from Carribean AIDS patients by PCR-restriction enzyme analysis and sequencing of hsp65 gene. Mol Cell. Probes. 14:2000;355-363.
21. Reischl U., Feldmann K., Naumann L., et al. 16S rRNA sequence diversity in Mycobacterium celatum strains caused by presence of two different copies of 16S rRNA gene. J Clin Microbiol. 36:1998;1761-1764.
22. Ergin A., Kocagöz T., Dürdal U.S. Evaluation of 120 mycobacterial strains isolated from clinical specimens to the species level by polymerase chain reaction-restriction enzyme analysis. Scand J Infectious Dis. 32:2000;657-662.
23. Roth A., Reischl U., Schönfeld N., et al. Mycobacterium heckeshornense sp. nov, a new pathogenic slowly growing mycobacteria sp. causing cavitary lung disease in an immunocompetent patient. J Clin Microbiol. 38:2000;4102-4107.