System, trends and perspectives of proteomics in dicot plants: Part II: Proteomes of the complex developmental stages

Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences

Volumn 815, Issue 1-2, 2005, Pages 125-136

  Agrawal, Ganesh Kumar ^a   Yonekura, Masami ^b   Iwahashi, Yumiko ^c   Iwahashi, Hitoshi ^d   Rakwal, Randeep ^a,d  

^a Research Laboratory for Agricultural Biotechnology and Biochemistry Nepal   (Nepal)

^b IBARAKI UNIVERSITY   (Japan)

^c NATIONAL FOOD RESEARCH INSTITUTE   (Japan)

^d NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

Author keywords

2 DGE; Development; Dicotyledoneous plants; MS; Proteomes

Indexed keywords

DATABASE SYSTEMS; ELECTROPHORESIS; GELS; MASS SPECTROMETRY; MATHEMATICAL MODELS; PLANTS (BOTANY); TISSUE; TWO DIMENSIONAL;

ARABIDOPSIS THALIANA; DICOT PLANTS; PROTEOMICS; TWO-DIMENSIONAL GEL ELECTROPHORESIS (2-DGE);

PROTEINS;

GLYPICAN; MITOCHONDRIAL PROTEIN; PROTEOME; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE (UBIQUINONE); RIBOSOME PROTEIN; THIOREDOXIN; VEGETABLE PROTEIN;

ARABIDOPSIS; CELL CULTURE; CELL NUCLEUS; CELL ORGANELLE; CELL WALL; CHLOROPLAST; DEVELOPMENTAL STAGE; ENDOPLASMIC RETICULUM; FLOWER; FRUIT; MEDICAGO; MICROTUBULE; MITOCHONDRION; NONHUMAN; PEROXISOME; PLANT DEVELOPMENT; PLANT LEAF; PLANT ROOT; PLANT SEED; PLANT STEM; PLANT TISSUE; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEOMICS; REVIEW; SENESCENCE; TISSUE SPECIFICITY; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ARABIDOPSIS; CELLS, CULTURED; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; MASS SPECTROMETRY; MEDICAGO TRUNCATULA; ORGANELLES; PLANT PROTEINS; PLANTS; PROTEOME; PROTEOMICS;

ARABIDOPSIS; ARABIDOPSIS THALIANA; MEDICAGO; MEDICAGO TRUNCATULA;

EID: 12344333643     PISSN: 15700232     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jchromb.2004.11.023     Document Type: Review

References (58)

1. P.F. O'Farrell J. Biol. Chem. 250 1975 4007
2. J. Klose Humangenetik 26 1975 231
3. G.A. Scheele J. Biol. Chem. 250 1975 5375
4. J. Li, and S.M. Assmann Plant Physiol. 123 2000 807
5. B.R. Herbert, J.L. Harry, N.H. Packer, A.A. Gooley, S.K. Pedersen, and K.L. Williams Trends Biotech. 19 2001 3
6. R. Aebersold, and M. Mann Nature 422 2003 198
7. G.K. Agrawal, M. Yonekura, Y. Iwahashi, H. Iwahashi, R. Rakwal, J. Chromatogr. B 815 (2005) 109.
8. M. Kamo, T. Kawakami, N. Miyatake, and A. Tsugita Electrophoresis 16 1995 423
9. B.S. Watson, V.S. Asirvathan, L. Wang, and L.W. Summer Plant Physiol. 131 2003 1104
10. M. Faurobert Electrophoresis 18 1997 170
11. K. Gallardo, C. Job, S.P.C. Groot, M. Puype, H. Demol, J. Vandekerckhove, and D. Job Plant Physiol. 126 2001 835
12. K. Gallardo, C. Job, S.P.C. Groot, M. Puype, H. Demol, J. Vandekerckhove, and D. Job Plant Physiol. 129 2002 823
13. K. Gallardo, C.L. Signor, J. Vandekerckhove, R.D. Thompson, and J. Burstin Plant Physiol. 133 2003 664
14. G. Decker, G. Wanner, M.H. Zenk, and F. Lottspeich Electrophoresis 21 2000 3500
15. J.E. Sarry, N. Sommerer, F.X. Sauvage, A. Bergoin, M. Rossignol, G. Albagnac, and C. Romieu Proteomics 4 2004 201
16. T. Prime, D. Sherrier, P. Mahon, L. Packman, and P. Dupree Electrophoresis 21 2000 3488
17. C.M. Smart New Phytol. 126 1994 419
18. S. Gan, and R.M. Amasino Plant Physiol. 113 1997 313
19. K.A. Wilson, M.T. McManus, M.E. Gordon, and T.W. Jordan Proteomics 2 2002 1114
20. S. Chivasa, B.K. Ndimba, W.J. Simon, D. Robertson, X.L. Yu, J.P. Knox, P. Bolwell, and A.R. Slabas Electrophoresis 23 2002 1754
21. T. Kieselbach, M. Bystedt, P. Hynds, C. Robinson, and W.P. Schroder FEBS Letts. 480 2000 271
22. M. Schubert, U.A. Petersson, B.J. Haas, C. Funk, W.P. Schroder, and T. Kieselbach J. Biol. Chem. 277 2002 8354
23. J.B. Peltier, G. Frisco, D.E. Kalume, P. Roepstorff, F. Nilsson, I. Adamska, and K.J. van Wijk Plant Cell. 12 2000 319
24. J.B. Peltier, O. Emanuelsson, D.E. Kalume, J. Ytterberg, G. Frisco, A. Rudella, D.A. Liberles, L. Soderberg, P. Roepstorff, G. von Heijne, and K.J. van Wijk Plant Cell 14 2002 211
25. G. Friso, L. Giacomelli, A.J. Ytterberg, J.B. Peltier, A. Rudella, Q. Sun, and K.J. van Wijk Plant Cell. 16 2004 478
26. M. Ferro, D.D. Slavi, S. Brugiere, S. Miras, S. Kowalski, M. Louwagie, J. Garin, J. Joyard, and N. Rolland Mol. Cell. Proteomics 2 2003 325
27. J.E. Froehlich, C.G. Wilkerson, W.K. Ray, R.S. McAndrew, K.W. Osteryoung, D.A. Gage, and B.S. Phinney J. Proteome Res. 2 2003 413
28. K. Yamaguchi, K. von Knoblauch, and A.R. Subramanian J. Biol. Chem. 275 2000 28455
29. K. Yamaguchi, and A.R. Subramanian J. Biol. Chem. 275 2000 28466
30. K. Yamaguchi, and A.R. Subramanian Eur. J. Biochem. 270 2003 190
31. K. Motohashi, A. Kondoh, M.T. Stumpp, and T. Hisabori Proc. Natl. Acad. Sci. U.S.A. 98 2001 11224
32. Y. Balmer, A. Koller, G. de Val, W. Manieri, P. Schumann, and B.B. Buchanan Proc. Natl. Acad. Sci. U.S.A. 100 2003 370
33. D.J. Maltman, W.J. Simon, C.H. Wheeler, M.J. Dunn, R. Wait, and A.R. Slabas Electrophoresis 23 2002 626
34. J. Chan, G. Mao, and C. Lloyd Cell Biol. Inter. 27 2003 181
35. V. Kruft, H. Eubel, L. Jansch, W. Werhan, and H.P. Braun Plant Physiol. 127 2001 1694
36. A.H. Millar, L.J. Sweetlove, P. Giege, and C.J. Leaver Plant Physiol. 127 2001 1711
37. A.H. Millar, and J.L. Heazelwood Plant Physiol. 131 2003 443
38. V.L. Herald, J.L. Heazlewood, D.A. Day, and A.H. Millar FEBS Letts. 537 2003 96
39. H. Eubel, L. Jansch, and H.P. Braun Plant Physiol. 133 2003 274
40. J.L. Heazlewood, K.A. Howell, and A.H. Millar Biochim. Biophys. Acta 1604 2003 159
41. J. Bardel, M. Louwagie, M. Jaquinod, A. Jourdain, S. Luche, T. Rabilloud, D. Macherel, J. Garin, and J. Bourguignn Proteomics 2 2002 880
42. J.L. Heazelwood, J.S. Tonti-Filippini, A.M. Gout, D.A. Day, J. Whelan, and A.H. Millar Plant Cell. 16 2004 241
43. H. Schagger, and K. Pfeiffer EMBO J. 19 2000 1777
44. H. Schagger Methods Cell Biol. 65 2001 231
45. L. Maffey, H. Degand, and M. Boutry Mol. Gen. Genet. 254 1997 365
46. Y. Balmer, W.H. Vensel, C.K. Tanaka, W.J. Hurkman, E. Gelhaye, N. Rouhier, J.P. Jacquot, W. Manieri, P. Schumann, M. Droux, and B.B. Buchanan Proc. Natl. Acad. Sci. U.S.A. 101 2004 2642
47. H. Yano, J.H. Wong, Y.M. Lee, M.J. Cho, and B.B. Buchanam Proc. Natl. Acad. Sci. U.S.A. 98 2001 4794
48. M.S. Bae, E.J. Cho, E.Y. Choi, and O.K. Park Plant J. 36 2003 652
49. K.M. Folta, and L.S. Kaufman Plant Cell Rep. 19 2000 504
50. Y. Fukao, M. Hayashi, and M. Nishimura Plant Cell. Physiol. 43 2002 689
51. D. Rouquie, J.B. Peltier, M. Manison, C. Tournairc, P. Doumas, and M. Rossignol Electrophoresis 18 1997 307
52. V. Santoni, D. Rouquie, P. Doumas, M. Manison, M. Boutry, H. Degand, P. Dupree, L. Packman, J. Sherrier, T. Prime, G. Bauw, E. Posada, P. Rouze, P. Dehais, I. Sahnoun, I. Barlier, and M. Rossignol Plant J. 16 1998 633
53. V. Santoni, P. Doumas, D. Rouquie, M. Manison, T. Rabilloud, and M. Rossignol Biochimie 81 1999 655
54. K. Simons, and E. Ikonen Nature 387 1997 569
55. S. Movahedi, and N.M. Hooper Biochem. J. 326 1997 531
56. D.J. Sherrier, T.A. Prime, and P. Dupree Electrophoresis 20 1999 2027
57. G.K. Agrawal, M. Yamazaki, M. Kobayashi, R. Hirochika, A. Miyao, and H. Hirochika Plant Physiol. 125 2001 1248
58. R. Motohashi, N. Nagata, T. Ito, S. Takahashi, T. Hobo, S. Yoshida, and K. Shinozaki Proc. Natl. Acad. Sci. U.S.A. 98 2001 10499