Gene profiling in muscle of severely burned children: Age- and sex-dependent changes

Journal of Surgical Research

Volumn 123, Issue 1, 2005, Pages 144-152

  Dasu, Mohan R K ^a   Barrow, Robert E ^a,b   Herndon, David N ^a  

^a UNIVERSITY OF TEXAS MEDICAL BRANCH   (United States)

^b SHRINERS HOSPITALS FOR CHILDREN   (United States)

Author keywords

children; microarray analysis; skeletal muscle; thermal injury

Indexed keywords

MESSENGER RNA;

ANGIOGENESIS; ARTICLE; BURN; CELL PROLIFERATION; CHILD; CHROMOSOME 1; CHROMOSOME 12; CHROMOSOME 16; CHROMOSOME 19; CHROMOSOME 2; CHROMOSOME 22; CHROMOSOME 3; CHROMOSOME 7; CHROMOSOME 8; CLEFT LIP; CLEFT PALATE; CLINICAL ARTICLE; COMPARATIVE STUDY; CONTROLLED STUDY; DNA MICROARRAY; FEMALE; GENE EXPRESSION; GENE EXPRESSION PROFILING; HOSPITAL ADMISSION; HUMAN; IMMUNE RESPONSE; MALE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN ISOLATION; RNA HYBRIDIZATION; SAMPLE SIZE; SIGNAL TRANSDUCTION; SKELETAL MUSCLE; STATISTICAL ANALYSIS; THERMAL INJURY; TRANSCRIPTION REGULATION; UNINDEXED SEQUENCE;

ADOLESCENT; AGE FACTORS; BURNS; CHILD; CHILD, PRESCHOOL; FEMALE; GENE EXPRESSION PROFILING; HUMANS; MALE; MUSCLE, SKELETAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEX FACTORS;

EID: 12144271774     PISSN: 00224804     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jss.2004.07.248     Document Type: Article

References (29)

1. A.S. Clark, R.A. Kelly, W.E. Mitch Systemic response to thermal injury in rats. Accelerated protein degradation and altered glucose utilization in muscle J. Clin. Invest. 74 1984 888
2. R.S. Downey, W.W. Monafo, I.E. Karl, D.E. Matthews, D.M. Bier Protein dynamics in skeletal muscle after trauma local and systemic effects Surgery 99 1986 265
3. C.H. Fang, H.J. James, C. Ogle, J.E. Fischer, P.O. Hasselgren Influence of burn injury on protein metabolism in different types of skeletal muscle and the role of glucocorticoids J. Am. Coll. Surg. 180 1995 33
4. T.G. Buchman, J.P. Cobb, A.S. Lapedes, T.B. Kepler Complex systems analysis a tool for shock research Shock 16 2001 248
5. T.P. Chung, J.M. Laramie, M. Province, J.P. Cobb Functional genomics of critical illness and injury Crit. Care Med. 30 2002 S51
6. D.N. Herndon, R.E. Barrow, T.C. Rutan, P. Minifee, F. Jahoor, R.R. Wolfe Effect of propranolol administration on hemodynamic and metabolic responses of burned pediatric patients Ann. Surg. 208 1988 484
7. P. Chomczynski, N. Sacchi Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction Anal. Biochem. 162 1987 156
8. M.R. Dasu, J.P. Cobb, J.M. Laramie, T.P. Chung, M. Spies, R.E. Barrow Gene expression profiles of livers from thermally injured rats Gene 327 2004 51
9. C. Li, W.H. Wong Model-based analysis of oligonucleotide arrays expression index computation and outlier detection Proc. Natl. Acad. Sci. USA 98 2001 31
10. Dudoit, S., Yang, Y. H., and Callow, M. Statistical methods for identifying differentially expressed genesin replicated cDNA microarray experiments. Berkeley, CA: Department of Statistics, University of California at Berkeley, Technical Report 578.
11. G. Dennis Jr., B.T. Sherman, D.A. Hosack, J. Yang, W. Gao, H.C. Lane, R.A. Lempicki DAVID database for annotation, visualization, and integrated discovery Genome Biol. 4 2003 R60
12. M.R. Dasu, H.L. Hawkins, R.E. Barrow, H. Xue, D.N. Herndon Gene expression profiles of hypertrophic scar fibroblasts before and after IL-6 stimulation J. Pathol. 202 2004 476
13. R.R. Wolfe, R.D. Goodenough, J.F. Burke, M.H. Wolfe Response of protein and urea kinetics in burn patients to different levels of protein intake Ann. Surg. 197 1983 163
14. R.L. Perry, M.A. Rudnick Molecular mechanisms regulating myogenic determination and differentiation Front Biosci. 5 2000 D750
15. R.E. Barrow, M.R. Dasu, A.A. Ferrando, M. Spies, S.J. Thomas, J.R. Perez-Polo, D.N. Herndon Gene expression patterns in skeletal muscle of thermally injured children treated with oxandrolone Ann Surg. 237 2003 422
16. S.E. Wolf, S.J. Thomas, M.R. Dasu, A.A. Ferrando, D.L. Chinkes, R.R. Wolfe, D.N. Herndon Improved net protein balance, lean mass, and gene expression changes with oxandrolone treatment in the severely burned Ann. Surg. 237 2003 801
17. H.B. Deng, H.K. Parekh, K.C. Chow, H. Simpkins Increased expression of dihydrodiol dehydrogenase induces resistance to cisplatin in human ovarian carcinoma cells J. Biol. Chem. 277 2002 15035
18. S. Harju, K.J. McQueen, K.R. Peterson Chromatin structure and control of beta-like globin gene switching Exp. Biol. Med. (Maywood) 227 2002 683
19. K. Iwanaga, N. Sueoka, A. Sato, T. Sakuragi, Y. Sakao, M. Tominaga, T. Suzuki, Y. Yoshida, K.T. J, T. Yamamoto, S. Hayashi, K. Nagasawa, E. Sueoka Alteration of expression or phosphorylation status of tob, a novel tumor suppressor gene product, is an early event in lung cancer Cancer Lett. 202 2003 71
20. R.T. Jagoe, A.L. Goldberg What do we really know about the ubiquitin-proteasome pathway in muscle atrophy? Curr. Opin. Clin. Nutr. Metab. Care. 4 2001 183
21. D. Attaix, L. Combaret, M.N. Pouch, D. Taillandier Regulation of proteolysis Curr. Opin. Clin. Nutr. Metab. Care 4 2001 45
22. M.H. Jones, R.A. Furlong, H. Burkin, I.J. Chalmers, G.M. Brown, O. Khwaja, N.A. Affara The Drosophila developmental gene fat facets has a human homologue in Xp11.4 which escapes X-inactivation and has related sequences on Yq11.2 Hum. Mol. Genet. 5 1996 1695
23. T.F. Lane, E.H. Sage The biology of SPARC, a protein that modulates cell-matrix interactions FASEB J. 8 1994 163
24. A.D. Bradshaw, E.H. Sage SPARC, a matricellular protein that functions in cellular differentiation and tissue response to injury J. Clin. Invest. 107 2001 1049
25. S. Arbabi, R.V. Maier Mitogen-activated protein kinases Crit. Care Med. 30 2002 S74
26. D. Engelkamp, B.W. Schafer, P. Erne, C.W. Heizmann S100 alpha, CAPL, and CACY molecular cloning and expression analysis of three calcium-binding proteins from human heart Biochemistry 31 1992 10258
27. A. Pallavicini, R. Zimbello, N. Tiso, T. Muraro, L. Rampoldi, S. Bortoluzzi, G. Valle, G. Lanfranchi, G.A. Danieli The preliminary transcript map of a human skeletal muscle Hum. Mol. Genet. 6 1997 1445
28. S. Bortoluzzi, L. Rampoldi, B. Simionati, R. Zimbello, A. Barbon, F. d'Alessi, N. Tiso, A. Pallavicini, S. Toppo, N. Cannata, G. Valle, G. Lanfranchi, G.A. Danieli A comprehensive, high-resolution genomic transcript map of human skeletal muscle Genome Res. 8 1998 817
29. D.N. Herndon, M.R. Dasu, R.R. Wolfe, R.E. Barrow Gene expression profiles and protein balance in skeletal muscle of burned children after beta-adrenergic blockade Am. J. Physiol. Endocrinol. Metab. 285 2003 E783