Complete genome sequence of cercopithecine herpesvirus 2 (SA8) and comparison with other simplexviruses

Virology

Volumn 331, Issue 2, 2005, Pages 429-440

  Tyler, Shaun D ^a   Peters, Geoffrey A ^a   Severini, Alberto ^a  

^a PUBLIC HEALTH AGENCY OF CANADA   (Canada)

Author keywords

Cercopithecine herpesvirus 2; Complete genome; Genomics; Herpesvirus; SA8; Simplexvirus

Indexed keywords

ARTICLE; CONTROLLED STUDY; GENE IDENTIFICATION; GENE REARRANGEMENT; GENE SEQUENCE; HERPES SIMPLEX VIRUS 1; HERPES SIMPLEX VIRUS 2; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; VIRULENCE; VIRUS GENOME;

ALPHAHERPESVIRINAE; ANIMALS; BASE SEQUENCE; CERCOPITHECUS AETHIOPS; DNA, VIRAL; GENOME, VIRAL; MACACA MULATTA; OPEN READING FRAMES; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SIMPLEXVIRUS; VERO CELLS; VIRAL ENVELOPE PROTEINS; VIRAL PROTEINS;

CERCOPITHECINE HERPESVIRUS 1; CERCOPITHECINE HERPESVIRUS 2; HERPES; HERPES SIMPLEX VIRUS (TYPE 1 \L STRAIN SC16); HERPESVIRIDAE; HERPESVIRUS 2; PAPIO HAMADRYAS; SIMIAE; SIMPLEXVIRUS;

EID: 11344283609     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virol.2004.09.042     Document Type: Article

References (75)

1. B.C. Barnett, A. Dolan, E.A. Telford, A.J. Davison, and D.J. McGeoch A novel herpes simplex virus gene (UL49A) encodes a putative membrane protein with counterparts in other herpesviruses J. Gen.Virol. 73 1992 2167 2171
2. E. Beaudoing, S. Freier, J.R. Wyatt, J.M. Claverie, and D. Gautheret Patterns of variant polyadenylation signal usage in human genes Genome Res. 10 2000 1001 1010
3. G. Benson Tandem repeats finder: a program to analyze DNA sequences Nucleic Acids Res. 27 1999 573 580
4. J. Besemer, and M. Borodovsky Heuristic approach to deriving models for gene finding Nucleic Acids Res. 27 1999 3911 3920
5. J. Besemer, A. Lomsadze, and M. Borodovsky GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions Nucleic Acids Res. 29 2001 2607 2618
6. K. Borchers, and M. Ozel Simian agent 8 (SA8): morphogenesis and ultrastructure Zentralbl. Bakteriol. 279 1993 526 536
7. K. Borchers, M. Ozel, G. Pauli, H.R. Gelderblom, and H. Ludwig Conserved epitopes of simian herpesvirus SA 8 and bovine herpesvirus type 2 Arch. Virol. 111 1990 1 14
8. M. Brack, J.W. Eichberg, R.L. Heberling, and S.S. Kalter Experimental Herpes neonatalis in SA 8-infected baboons (Papio cynocephalus) Lab. Anim. 19 1985 125 131
9. K.A. Cassady, M. Gross, and B. Roizman The herpes simplex virus US11 protein effectively compensates for the gamma1(34.5) gene if present before activation of protein kinase R by precluding its phosphorylation and that of the alpha subunit of eukaryotic translation initiation factor 2 J. Virol. 72 1998 8620 8626
10. X. Chen, M.C. Schmidt, W.F. Goins, and J.C. Glorioso Two herpes simplex virus type 1 latency-active promoters differ in their contributions to latency-associated transcript expression during lytic and latent infections J. Virol. 69 1995 7899 7908
11. J. Chou, and B. Roizman Herpes simplex virus 1 gamma(1)34.5 gene function, which blocks the host response to infection, maps in the homologous domain of the genes expressed during growth arrest and DNA damage Proc. Natl. Acad. Sci. U.S.A. 91 1994 5247 5251
12. J. Chou, E.R. Kern, R.J. Whitley, and B. Roizman Mapping of herpes simplex virus-1 neurovirulence to (134.5, a gene nonessential for growth in culture Science 250 1990 1262 1266
13. J. Chou, J.J. Chen, M. Gross, and B. Roizman Association of a Mr 90,000 phosphoprotein with protein kinase PKR in cells exhibiting enhanced phosphorylation of translation initiation factor eIF-2 alpha and premature shutoff of protein synthesis after infection with gamma 134.5- mutants of herpes simplex virus 1 Proc. Natl. Acad. Sci. U.S.A. 92 1995 10516 10520
14. A.J. Davison Structure of the genome termini of varicella-zoster virus J. Gen. Virol. 65 1984 1969 1977
15. W.L. Davidson, and K. Hummeler B virus infection in man Ann. N. Y. Acad. Sci. 85 1960 970 979
16. L.P. Deiss, J. Chou, and N. Frenkel Functional domains within the a sequence involved in the cleavage-packaging of herpes simplex virus DNA J. Virol. 59 1986 605 618
17. G.B. Devi-Rao, S.A. Goodart, L.M. Hecht, R. Rochford, M.K. Rice, and E.K. Wagner Relationship between polyadenylated and nonpolyadenylated herpes simplex virus type 1 latency-associated transcripts J. Virol. 65 1991 2179 2190
18. A.T. Dobson, F. Sederati, G. Devi-Rao, W.M. Flanagan, M.J. Farrell, J.G. Stevens, E.K. Wagner, and L.T. Feldman Identification of the latency-associated transcript promoter by expression of rabbit beta-globin mRNA in mouse sensory nerve ganglia latently infected with a recombinant herpes simplex virus J. Virol. 63 1989 3844 3851
19. A. Dolan, E. McKie, A.R. MacLean, and D.J. McGeoch Status of the ICP34.5 gene in herpes simplex virus type 1 strain 17 J. Gen. Virol. 73 1992 971 973
20. A. Dolan, F.E. Jamieson, C. Cunningham, B.C. Barnett, and D.J. McGeoch The genome sequence of herpes simplex virus type 2 J. Virol. 72 1998 2010 2021
21. R. Eberle, and D. Black The simian herpesvirus SA8 homologue of the herpes simplex virus gB gene: mapping, sequencing, and comparison to the HSV gB Arch. Virol. 118 1991 67 86
22. R. Eberle, and D. Black Sequence analysis of herpes simplex virus gB gene homologs of two platyrrhine monkey alpha-herpesviruses Arch. Virol. 129 1993 167 182
23. R. Eberle, D. Black, and J.K. Hilliard Relatedness of glycoproteins expressed on the surface of simian herpes-virus virions and infected cells to specific HSV glycoproteins Arch. Virol. 109 1989 233 252
24. R. Eberle, M. Zhang, and D.H. Black Gene mapping and sequence analysis of the unique short region of the simian herpesvirus SA 8 genome Arch. Virol. 130 1993 391 411
25. R. Eberle, D.H. Black, S. Lipper, and J.K. Hilliard Herpesvirus papio 2, an SA8-like alpha-herpesvirus of baboons Arch. Virol. 140 1995 529 545
26. J.W. Eichberg, B. McCullough, S.S. Kalter, D.E. Thor, and A.R. Rodriguez Clinical, virological, and pathological features of herpesvirus SA8 infection in conventional and gnotobiotic infant baboons (Papio cynocephalus) Arch. Virol. 50 1976 255 270
27. R.D. Everett, and M.L. Fenwick Comparative DNA sequence analysis of the host shutoff genes of different strains of herpes simplex virus: type 2 strain HG52 encodes a truncated UL41 product J. Gen. Virol. 71 1990 1387 1390
28. A.J. Fornace Jr., D.W. Nebert, M.C. Hollander, J.D. Luethy, M. Papathanasiou, J. Fargnoli, and N.J. Holbrook Mammalian genes coordinately regulated by growth arrest signals and DNA-damaging agents Mol. Cell. Biol. 9 1989 4196 4203
29. W.F. Goins, L.R. Sternberg, K.D. Croen, P.R. Krause, R.L. Hendricks, D.J. Fink, S.E. Straus, M. Levine, and J.C. Glorioso A novel latency-active promoter is contained within the herpes simplex virus type 1 UL flanking repeats J. Virol. 68 1994 2239 2252
30. J.D. Hall, J.S. Gibbs, D.M. Coen, and D.W. Mount Structural organization and unusual codon usage in the DNA polymerase gene from herpes simplex virus type 1 DNA 5 1986 281 288
31. D.J. Hazuda, H.C. Perry, A.M. Naylor, and W.L. McClements Characterization of the herpes simplex virus origin binding protein interaction with oriS J. Biol. Chem. 266 1991 24621 24626
32. S.A. Jackson, and N.A. DeLuca Relationship of herpes simplex virus genome configuration to productive and persistent infections Proc. Natl. Acad. Sci. U.S.A. 100 2003 7871 7876
33. C. Jones Herpes simplex virus type 1 and bovine herpesvirus 1 latency Clin. Microbiol. Rev. 16 2003 79 95
34. S.S. Kalter, S.A. Weiss, R.L. Heberling, J.E. Guajardo, and G.C. Smith III The isolation of herpesvirus from trigeminal ganglia of normal baboons (Papio cynocephalus) Lab. Anim. Sci. 28 1978 705 709
35. D. Katz, W. Shi, P.W. Krug, R. Henkel, H. McClure, and J.K. Hilliard Antibody cross-reactivity of alphaherpesviruses as mirrored in naturally infected primates Arch. Virol. 147 2002 929 941
36. J.L. Levin, J.K. Hilliard, S.L. Lipper, T.M. Butler, and W.J. Goodwin A naturally occurring epizootic of simian agent 8 in the baboon Lab. Anim. Sci. 38 1988 394 397
37. K.A. Lord, B. Hoffman-Liebermann, and D.A. Liebermann Sequence of MyD116 cDNA: a novel myeloid differentiation primary response gene induced by IL6 Nucleic Acids Res. 18 1990 2823
38. A.V. Lukashin, and M. Borodovsky GeneMark.hmm: new solutions for gene finding Nucleic Acids Res. 26 1998 1107 1115
39. H. Malherbe, and R. Harwin Neurotropic virus in African Monkeys Lancet 2 1958 530
40. H. Malherbe, and R. Harwin The cytopathic effects of vervet monkey viruses S. Afr. Med. J. 37 1963 407 411
41. H. Malherbe, and M. Strickland-Cholmley Simian herpesvirus SA8 from a baboon Lancet 2 1969 1427
42. H. Malherbe, and M. Strickland-Cholmley Virus from baboons Lancet 2 1969 1300
43. M.A. Martino, G.B. Hubbard, T.M. Butler, and J.K. Hilliard Clinical disease associated with simian agent 8 infection in the baboon Lab. Anim. Sci. 48 1998 18 22
44. D.J. McGeoch, and B.C. Barnett Neurovirulence factor Nature 353 1991 609
45. D.J. McGeoch, A. Dolan, S. Donald, and F.J. Rixon Sequence determination and genetic content of the short unique region in the genome of herpes simplex virus type 1 J. Mol. Biol. 181 1985 1 13
46. D.J. McGeoch, A. Dolan, S. Donald, and D.H. Brauer Complete DNA sequence of the short repeat region in the genome of herpes simplex virus type 1 Nucleic Acids Res. 14 1986 1727 1745
47. D.J. McGeoch, H.W. Moss, D. McNab, and M.C. Frame DNA sequence and genetic content of the HindIII l region in the short unique component of the herpes simplex virus type 2 genome: identification of the gene encoding glycoprotein G, and evolutionary comparisons J. Gen. Virol. 68 1987 19 38
48. D.J. McGeoch, M.A. Dalrymple, A.J. Davison, A. Dolan, M.C. Frame, D. McNab, L.J. Perry, J.E. Scott, and P. Taylor The complete DNA sequence of the long unique region in the genome of herpes simplex virus type 1 J. Gen. Virol. 69 1988 1531 1574
49. D.J. McGeoch, C. Cunningham, G. McIntyre, and A. Dolan Comparative sequence analysis of the long repeat regions and adjoining parts of the long unique regions in the genomes of herpes simplex viruses types 1 and 2 J. Gen. Virol. 72 1991 3057 3075
50. M.A. McVoy, D.E. Nixon, S.P. Adler, and E.S. Mocarski Sequences within the herpesvirus-conserved pac1 and pac2 motifs are required for cleavage and packaging of the murine cytomegalovirus genome J. Virol. 72 1998 48 56
51. M.A. McVoy, D.E. Nixon, J.K. Hur, and S.P. Adler The ends on herpesvirus DNA replicative concatemers contain pac2 cis cleavage/packaging elements and their formation is controlled by terminal cis sequences J. Virol. 74 2000 1587 1592
52. E.S. Mocarski, and B. Roizman Structure and role of the herpes simplex virus DNA termini in inversion, circularization and generation of virion DNA Cell 31 1982 89 97
53. I. Mohr, and Y. Gluzman A herpesvirus genetic element which affects translation in the absence of the viral GADD34 function EMBO J. 15 1996 4759 4766
54. M. Mulvey, J. Poppers, A. Ladd, and I. Mohr A herpesvirus ribosome-associated, RNA-binding protein confers a growth advantage upon mutants deficient in a GADD34-related function J. Virol. 73 1999 3375 3385
55. M. Mulvey, V. Camarena, and I. Mohr Full resistance of herpes simplex virus type 1-infected primary human cells to alpha interferon requires both the Us11 and gamma(1)34.5 gene products J. Virol. 78 2004 10193 10196
56. L. Perelygina, L. Zhu, H. Zurkuhlen, R. Mills, M. Borodovsky, and J.K. Hilliard Complete sequence and comparative analysis of the genome of herpes B virus (cercopithecine herpesvirus 1) from a rhesus monkey J. Virol. 77 2003 6167 6177
57. L.J. Perry, and D.J. McGeoch The DNA sequences of the long repeat region and adjoining parts of the long unique region in the genome of herpes simplex virus type 1 J. Gen. Virol. 69 1988 2831 2846
58. B. Roizman The structure and isomerization of herpes simplex virus genome Cell 16 1979 481 494
59. B. Roizman, and P.E. Pellet The family Herpesviridae: a brief introduction D.M. Knipe P.M. Howley Fields Virology 2001 Lippincott, Williams and Wilkins 2381 2397
60. K. Rutherford, J. Parkhill, J. Crook, T. Horsnell, P. Rice, M.A. Rajandream, and B. Barrell Artemis: sequence visualization and annotation Bioinformatics 16 2000 944 945
61. A.B. Sabin Fatal B virus encephalomyelitis in a physician working with monkeys J. Clin. Invest. 28 1949 808
62. A.B. Sabin, and A.M. Wright Acute ascending myelitis following a monkey bite, with the isolation of a virus capable of reproducing the disease J. Exp. Med. 59 1934 115 136
63. G.A. Schachtel, P. Bucher, E.S. Mocarski, B.E. Blaisdell, and S. Karlin Evidence for selective evolution in codon usage in conserved amino acid segments of human alphaherpesvirus proteins J. Mol. Evol. 33 1991 483 494
64. J.R. Smiley, J. Duncan, and M. Howes Sequence requirements for DNA rearrangements induced by the terminal repeat of herpes simplex virus type 1 KOS DNA J. Virol. 64 1990 5036 5050
65. R. Staden, K.F. Beal, and J.K. Bonfield The Staden Package, 1998 vol. 132 1999 The Humana Press, Inc. Totowa, NJ 115 130
66. M.H.V. van Regenmortel, C.M. Fauquet, D.H.L. Bishop, E.B. Carstens, M.K. Estes, S.M. Lemon, J. Maniloff, M.A. Mayo, D.J. McGeoch, C.R. Pringle, and R.B. Wickner Virus taxonomy VIIth Report of the ICTV 2000 Academic Press San Diego
67. S.L. Varmuza, and J.R. Smiley Signals for site-specific cleavage of HSV DNA: maturation involves two separate cleavage events at sites distal to the recognition sequences Cell 41 1985 793 802
68. M. Veit, E. Ponimaskin, S. Baiborodin, H.R. Gelderblom, and M.F. Schmidt Intracellular compartmentalization of the glycoprotein B of herpesvirus Simian agent 8 expressed with a baculovirus vector in insect cells Arch. Virol. 141 1996 2009 2017
69. E.K. Wagner, and D.C. Bloom Experimental investigation of herpes simplex virus latency Clin. Microbiol. Rev. 10 1997 419 443
70. J.M. Walboomers, and J.T. Schegget A new method for the isolation of herpes simplex virus type 2 DNA Virology 74 1976 256 258
71. B.J. Weigler Biology of B virus in macaque and human hosts: a review Clin. Infect. Dis. 14 1992 555 567
72. 134.5 deletion mutants in rodent models J. Clin. Invest. 91 1993 2837 2843
73. X.D. Yao, M. Matecic, and P. Elias Direct repeats of the herpes simplex virus a sequence promote nonconservative homologous recombination that is not dependent on XPF/ERCC4 J. Virol. 71 1997 6842 6849
74. Q. Zhan, K.A. Lord, I. Alamo Jr., M.C. Hollander, F. Carrier, D. Ron, K.W. Kohn, B. Hoffman, D.A. Liebermann, and A.J. Fornace Jr. The gadd and MyD genes define a novel set of mammalian genes encoding acidic proteins that synergistically suppress cell growth Mol. Cell. Biol. 14 1994 2361 2371
75. L. Zhu, L. Perelygina, I. Patrusheva, and J.K. Hilliard Counteraction of PKR by B virus US11 protein 23rd Annual Meeting of the American Society for Virology 2004 W51-2 (Abstract)