A mitochondrial plasmid and plasmid-like RNA and DNA polymerases encoded within the mitochondrial genome of carrot (Daucus carota L.)

Current Genetics

Volumn 47, Issue 1, 2005, Pages 57-66

  Robison, Mary M ^a   Wolyn, David J ^a  

^a UNIVERSITY OF GUELPH   (Canada)

Author keywords

Carrot; DNA polymerase; Mitochondria; Plasmid; RNA polymerase

Indexed keywords

DNA POLYMERASE; MITOCHONDRIAL DNA; NUCLEOTIDE; PLASMID DNA; RNA POLYMERASE;

ARTICLE; CARROT; COMPUTER PROGRAM; CONTROLLED STUDY; DNA SEQUENCE; DNA TRANSCRIPTION; GENBANK; GENETIC CODE; MITOCHONDRIAL GENETICS; MITOCHONDRION; MITOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT GENETICS; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA TRANSLATION; SOUTHERN BLOTTING;

AMINO ACID SEQUENCE; DAUCUS CAROTA; DNA, MITOCHONDRIAL; DNA-DIRECTED DNA POLYMERASE; DNA-DIRECTED RNA POLYMERASES; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLASMIDS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION, GENETIC;

DAUCUS; DAUCUS CAROTA;

EID: 11244347905     PISSN: 01728083     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00294-004-0549-x     Document Type: Article

References (31)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
2. Bedinger P, Hostos EL de, Leon P, Walbot V (1986) Cloning and characterization of a linear 2.3 kb mitochondrial plasmid of maize. Mol Gen Genet 205:206-212
3. Braithwaite DK, Ito J (1993) Compilation, alignment and phylogenetic relationships of DNA polymerases. Nucleic Acids Res 21:787-802
4. Cermakian N, Ikeda TM, Miramontes P, Lang BF, Gray MW, Cedergren R (1997) On the evolution of the single-subunit RNA polymerases. J Mol Evol 45:671-681
5. Chahal A, Sidhu HS, Wolyn DJ (1998) A fertile revertant from petaloid cytoplasmic male-sterile carrot has a rearranged mitochondrial genome. Theor Appl Genet 97:450-455
6. Dohmen G, Tudzynski P (1994) A DNA-polymerase-related reading frame (pol-r) in the mtDNA of Secale cereale. Curr Genet 25:59-65
7. Escote LJ, Gabay-Laughnan SJ, Laughnan JR (1985) Cytoplasmic reversion to fertility in cms -S maize need not involve loss of linear mitochondrial plasmids. Plasmid 14:264-267
8. Felsenstein J (1993) PHYLIP (phylogeny inference package) ver. 3.5c. University of Washington
9. Garcia JA, Kolacz K, Studnicka GM, Gilmore-Hebert, M (1988) Sequence of integrated S-1 homologous DNA in the normal maize mitochondrial genome. Nucleic Acids Res 16:4169-4170
10. Gray MW (1989) Origin and evolution of mitochondrial DNA. Annu Rev Cell Biol 5:25-30
11. Hall T (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98
12. Handa H (2003) The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed ( Brassica napus L): Comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana. Nucleic Acids Res 31:5907-5916
13. Handa H, Itani K, Sato H (2002) Structural features and expression analysis of a linear mitochondrial plasmid in rapeseed ( Brassica napus L). Mol Genet Genomics 267:797-805
14. Kubo T, Nishizawa S, Sugawara A, Itchoda N, Estiata A, Mikami T (2000) The complete nucleotide sequence of the mitochondrial genome of sugar beet ( Beta vulgaris L) reveals a novel gene for tRNA cys (GCA). Nucleic Acids Res 28:2571-2576
15. Levings CS, Sederoff RR (1983) Nucleotide sequence of the S-2 mitochondrial DNA from the S cytoplasm of maize. Proc Natl Acad Sci USA 80:4055-4059
16. Meinhardt F, Kempken F, Kämper J, Esser K (1990) Linear plasmids among eukaryotes: Fundamentals and application. Curr Genet 17:89-95
17. Notsu Y, Masood S, Nishikawa T, Kubo N, Akiduki G, Nakazono M, Hirai A, Kadowaki K (2002) The complete sequence of the rice ( Oryza sativa L) mitochondrial genome: Frequent DNA sequence acquisition and loss during the evolution of flowering plants. Mol Genet Genomics 268:434-445
18. O'Brien C, Zabala G, Walbot V (1988) Integrated R2 sequence in mitochondria of fertile B37N maize encodes and expresses a 130 kD polypeptide similar to that encoded by the S2 episome of S-type male sterile plants. Nucleic Acids Res 17:405-422
19. Oda K, Yamato K, Ohta E, Nakamura Y, Takemura M, Nozato N, Akashi K, Kanegae T, Ogura Y, Kohchi T, Ohyama K (1992) Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. J Mol Biol 223:1-7
20. Paillard M, Sederoff RR, Levings CS (1985) Nucleotide sequence of the S-1 mitochondrial DNA from the S cytoplasm of maize. EMBO J 4:1125-1128
21. Pring DR, Lonsdale DM (1985) Molecular biology of higher plant mitochondrial DNA. Int Rev Cytol 97:1-46
22. Robison MM, Wolyn DJ (2002) Complex organization of the mitochondrial genome of petaloid CMS carrot. Mol Genet Genomics 268:232-239
23. Robison MM, Kerrigan RW, Horgen PA (1997) Distribution of plasmids and a plasmid-like mitochondrial sequence in the genus Agaricus. Mycologia 89:43-47
24. Rogers SO, Bendich AJ (1994) Extraction of total cellular DNA from plants, algae and fungi. In: Gelvin SB, Schilperoort RA (eds) Plant molecular biology manual, vol D1, 2nd edn. Kluwer, Dordrecht, pp 1-8
25. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: A laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
26. Saumitou-Laprade P, Pannenbecker G, Maggouta F, Jean R, Michaelis G (1989) A linear 10.4 kb plasmid in the mitochondria of Beta maritima. Curr Genet 16:181-186
27. Schardl CL, Lonsdale DM, Pring DR, Rose KR (1984) Linearization of maize mitochondrial chromosomes by recombination with linear episomes. Nature 310:292-296
28. Stern DB, Newton KJ (1986) Isolation of plant mitochondrial RNA. Methods Enzymol 118:488-496
29. Turpen T, Garger SJ, Marks MD, Grill LK (1987) Molecular cloning and physical characterization of a Brassica linear mitochondrial plasmid. Mol Gen Genet 209:227-233
30. Unseld M, Marienfeld JR, Brandt P, Brennicke A (1997) The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides. Nat Genet 15:57-61
31. Weber B, Borner T, Weihe A (1995) Remnants of a DNA polymerase gene in the mitochondrial DNA of Marchantia polymorpha. Curr Genet 27:488-490