Isolation and mapping the chicken zona pellucida genes: An insight into the evolution of orthologous genes in different species

Molecular Reproduction and Development

Volumn 70, Issue 2, 2005, Pages 133-145

  Smith, Jacqueline ^a   Paton, Ian R ^a   Hughes, David C ^b   Burt, David W ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b UNIVERSITY OF DERBY   (United Kingdom)

Author keywords

Chicken; Evolution; Gene duplication; Gene loss; Orthology; Parology; Zona pellucida

Indexed keywords

AMINO ACID;

AMINO ACID SEQUENCE; ARTICLE; CHICKEN; CHROMOSOME 10; CHROMOSOME 14; CHROMOSOME 3; CHROMOSOME 5; CHROMOSOME 6; GENE DELETION; GENE INACTIVATION; GENE ISOLATION; GENE LOSS; GENE MAPPING; HUMAN; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PRIORITY JOURNAL; SPECIES COMPARISON; UNINDEXED SEQUENCE; XENOPUS; ZONA PELLUCIDA;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CHICKENS; CHROMOSOME MAPPING; EGG PROTEINS; EVOLUTION, MOLECULAR; HUMANS; IN SITU HYBRIDIZATION, FLUORESCENCE; MEMBRANE GLYCOPROTEINS; MICE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RECEPTORS, CELL SURFACE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SPERM-OVUM INTERACTIONS; ZONA PELLUCIDA;

AVES; GALLUS GALLUS; MAMMALIA;

EID: 11244280891     PISSN: 1040452X     EISSN: None     Source Type: Journal    
DOI: 10.1002/mrd.20197     Document Type: Article

References (53)

1. Altschul SF, Gish W, Miller W, Myers EW Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215:403-410.
2. Bausek N, Waclawek M, Schneider WJ, Wohlrab F. 2000. The major chicken egg envelope protein ZP1 is different from ZPB and is synthesized in the liver. J Biol Chem 275:28866-28872.
3. Birney E, Durbin R. 2000. Using genewise in the Drosophila annotation experiment. Genome Res 10:547-548.
4. Bork P, Sander C. 1992. A large domain common to sperm receptors (Zp2 and Zp4) and TGF-beta type III receptor. FEBS Lett 300:237-240.
5. Chamberlin ME, Dean J. 1990. Human homolog of the mouse sperm receptor. Proc Natl Acad Sci USA 87:6014-6018.
6. Conner SJ, Hughes DC. 2003. Analysis of fish ZP1/ZPB homologous genes - Evidence for both genome duplication and species-specific amplification models of evolution. Reproduction 126:347-352.
7. Crittenden LB, Provencher L, Santangelo L, Levin I, Abplanalp H, Briles RW, Briles WE, Dodgson JB. 1993. Characterization of a Red Jungle Fowl by White Leghorn backcross reference population for molecular mapping of the chicken genome. Poult Sci 72:334-348.
8. Crooijmans RPMA, Vrebalov J, Dijkhof RJM, van der Poel JJ, Groenen MAM. 2000. Two-dimensional screening of the Wageningen chicken BAC library. Mamm Genome 11:360-363.
9. Epifano O, Liang LF, Dean J. 1995. Mouse Zp1 encodes a zona pellucida protein homologous to egg envelope proteins in mammals and fish. J Biol Chem 270:27254-27258.
10. Groenen MA, Cheng HH, Bumstead N, Benkel BF, Briles WE, Burke T, Burt DW, Crittenden LB, Dodgson J, Hillel J, Lament S, de Leon AP, Soller M, Takahashi H, Vignal A. 2000. A consensus linkage map of the chicken genome. Genome Res 10:137-147.
11. Harris JD, Hibler DW, Fontenot GK, Hsu KT, Yurewicz EC, Sacco AG. 1994. Cloning and characterization of zona pellucida genes and cDNAs from a variety of mammalian species: The ZPA, ZPB, and ZPC gene families. DNA Seq 4:361-393.
12. Hubbard T, Barker D, Birney E. 2002. The ensembl genome database project. Nucleic Acids Res 30:38-41.
13. Hughes DC, Barratt CL. 1999. Identification of the true human orthologue of the mouse Zp1 gene: Evidence for greater complexity in the mammalian zona pellucida? Biochim Biophys Acta 1447:303-306.
14. Hyllner SJ, Westerlund L, Olsson PE, Schopen A. 2001. Cloning of rainbow trout egg envelope proteins: Members of a unique group of structural proteins. Biol Reprod 64:805-811.
15. Jones DT, Taylor WR, Thornton JM. 1992. The rapid generation of mutation data matrices from protein sequences. CABIOS 8:275-282.
16. Kanamori A. 2000. Systematic identification of genes expressed during early oogenesis in medaka. Mol Rep Dev 55:31-36.
17. Kanamori A, Naruse K, Mitani H, Shima A, Hori H. 2003. Genomic organization of ZP domain containing egg envelope genes in medaka (Oryzias latipes). Gene 305:35-45.
18. Kinloch RA, Wassarman PM. 1989. Nucleotide sequence of the gene encoding zona pellucida glycoprotein ZP3 - The mouse sperm receptor. Nucleic Acids Res 17:2861-2863.
19. Kosambi DD. 1944. The estimation of the map distance from recombination values. Ann Eugenics 12:172-175.
20. Kubo H, Kawano T, Tsubuki S, Kawashima S, Katagiri C, Suzuki A. 1997. A major glycoprotein of Xenopus egg vitelline envelope, gp41, is a frog homolog of mammalian ZP3. Dev Growth Differ 39:405-417.
21. Kubo H, Kawano T, Tsubuki S, Kotani M, Kawasaki H, Kawashima S. 2000. Egg envelope glycoprotein gp37 as a Xenopus homolog of mammalian ZP1, based on cDNA cloning. Dev Growth Differ 42:419-427.
22. Lefievre L, Conner SJ, Salpekar A, Olufowobi O, Ashton P, Pavlovic B, Lenton W, Afnan M, Brewis IA, Monk M, Hughes DC, Barratt CL. 2004. Four zona pellucida glycoproteins are expressed in the human. Hum Reprod 19:1580-1586.
23. Liang LF, Dean J. 1993. Conservation of mammalian secondary sperm receptor genes enables the promoter of the human gene to function in mouse oocytes. Dev Biol 156:399-408.
24. Liang LF, Chamow SM, Dean J. 1990. Oocyte-specific expression of mouse Zp-2: Developmental regulation of the zona pellucida genes. Mol Cell Biol 10:1507-1515.
25. Lindsay LL, Wallace MA, Hedrick JL. 2001. A hatching enzyme substrate in the Xenopus laevis egg envelope is a high molecular weight ZPA homolog. Dev Growth Differ 43:305-313.
26. Lindsay LL, Yang JC, Hedrick JL. 2002. Identification and characterization of a unique Xenopus laevis egg envelope component, ZPD. Dev Growth Differ 44:205-212.
27. Manly KF. 1993. A Macintosh program for storage and analysis of experimental genetic mapping data. Mamm Genome 4:303-313.
28. McLeskey SB, Dowds C, Carballada R, White RR, Saling PM. 1998. Molecules involved in mammalian sperm-egg interaction. Int Rev Cytol 177:57-113.
29. Page RDM. 1996. TREEVIEW: An application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-358.
30. Rigby PWJ, Dieckmann M, Rhodes C, Berg P. 1977. Labelling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I. J Mol Biol 113:237-251.
31. Schmid M, Nanda I, Guttenbach M, Steinlein C, Hoehn H, Schartl M, Haaf T, Weigend S, Fries R, Buerstedde J-M. et al. 2000. First report on chicken genes and chromosomes 2000. Cytogenet Cell Genet. 90:169-218.
32. Schmidt HA, Strimmer K, Vingron M, von Haeseler A. 2002. TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:502-504.
33. Spargo SC, Hope RM. 2003. Evolution and nomenclature of the zona pellucida gene family. Biol Reprod 68:358-362.
34. Swanson WJ, Vacquier VD. 2002. The rapid evolution of reproductive proteins. Nature Rev: Genetics 3:137-144.
35. Swofford DL. 2002. PAUP* (Phylogenetic Analysis Using Parsimony) (* and other methods), Version 4.0, Sunderland, MA: Sinauer Associates.
36. Takeuchi Y, Nishimura K, Aoki N, Adachi T, Sato C, Kitajima K, Matsuda T. 1999. A 42-kDa glycoprotein from chicken egg-envelope, an avian homolog of the ZPC family glycoproteins in mammalian zona pellucida. Its first identification, cDNA cloning and granulosa cell-specific expression. Eur J Biochem 260:736-742.
37. Takeuchi Y, Cho R, Iwata Y, Nishimura K, Kato T, Aoki N, Kitajima K, Matsuda T. 2001. Morphological and biochemical changes of isolated chicken egg-envelope during sperm penetration: Degradation of the 97-kilodalton glycoprotein is involved in sperm-driven hole formation on the egg-envelope. Biol Reprod 64:822-830.
38. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL_X windows interface: Flexible strategies for multiple-sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882.
39. Tian J, Gong H, Lennarz WJ. 1999. Xenopus laevis sperm receptor gp69/64 glycoprotein is a homolog of the mammalian sperm receptor ZP2. Proc Natl Acad Sci USA 96:829-834.
40. Vacquier VD. 1998. Evolution of gamete recognition proteins. Science 281:1995-1998.
41. Waclawek M, Foisner R, Nimpf J, Schneider WJ. 1998. The chicken homologue of zona pellucida protein-3 is synthesized by granulosa cells. Biol Reprod 59:1230-1239.
42. Xia YN, Burbank DE, Uher L, Rabussay D, van Etten JL. 1987. IL-3A virus infection of a Chlorella-like green alga induces a DNA restriction endonuclease with novel sequence specificity. Nucl Acids Res 15:6075-6090.
43. Yeh R-F, Lim LP, Burge CB. 2001 Computational inference of homologous gene structures in the human genome. Genome Res 11:803-816.
44. Yurewicz EC, Sacco AG, Gupta SK, Xu N, Gage DA. 1998. Heterooligomerization-dependent binding of pig oocyte zona pellucida glycoproteins ZPB and ZPC to boar sperm membrane vesicles. J Biol Chem 273:7488-7494.
45. WWW references: CLUSTAL X (version 1.81): ftp://ftp-igbmc.u-strasbg.fr/ pub/ClustalX/;
46. BioEdit (version 5.0): http://www.mbio. ncsu.edu/BioEdit/bioedit.html;
47. PAUP* (version 4.0): http://paup. csit.fsu.edu/;
48. TREE-PUZZLE (version 5.1): http://www.tree-puzzle. de/;
49. TreeView (version 1.6.6): http://taxonomy.zoology.gla.ac.uk/rod/treeview. html;
50. BOXSHADE (version 3.21): http://www.ch.embnet. org/software/BOX_form. html;
51. Ensembl: http://pre.ensembl. org/ Gallus_gallus/;
52. Genomescan: http://genes.mit.edu/genomescan.html;
53. Genewise: http://www.ebi.ac.uk/Wise2/