-
1
-
-
0037329391
-
Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence
-
ALFARO, M. E., S. ZOLLER, AND F. LUTZONI. 2003. Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Molecular Biology and Evolution 20:255-266.
-
(2003)
Molecular Biology and Evolution
, vol.20
, pp. 255-266
-
-
Alfaro, M.E.1
Zoller, S.2
Lutzoni, F.3
-
2
-
-
0542420419
-
Guidelines for the capture, handling, and care of mammals as approved by the American Society of Mammalogists
-
ANIMAL CARE AND USE COMMITTEE. 1998. Guidelines for the capture, handling, and care of mammals as approved by the American Society of Mammalogists. Journal of Mammalogy 79:1416-1431.
-
(1998)
Journal of Mammalogy
, vol.79
, pp. 1416-1431
-
-
-
3
-
-
0000978384
-
Biochemical polymorphism and systematics in the genus Peromyscus VII. Geographic differentiation of the truei and maniculatus species groups
-
AVISE, J. C., M. A. SMITH, AND R. K. SELANDER. 1979. Biochemical polymorphism and systematics in the genus Peromyscus VII. Geographic differentiation of the truei and maniculatus species groups. Journal of Mammalogy 60:177-192.
-
(1979)
Journal of Mammalogy
, vol.60
, pp. 177-192
-
-
Avise, J.C.1
Smith, M.A.2
Selander, R.K.3
-
4
-
-
3743098943
-
Biological and morphological distinctness of a previously undescribed species of the Peromyscus truei group from Texas
-
University of Michigan
-
BLAIR, W. F. 1943. Biological and morphological distinctness of a previously undescribed species of the Peromyscus truei group from Texas. Contributions from the Laboratory of Vertebrate Biology, University of Michigan 24:1-8.
-
(1943)
Contributions from the Laboratory of Vertebrate Biology
, vol.24
, pp. 1-8
-
-
Blair, W.F.1
-
5
-
-
0035205972
-
A test of the genetic species concept: Cytochrome-b sequences and mammals
-
BRADLEY, R. D., AND R. J. BAKER. 2001. A test of the genetic species concept: cytochrome-b sequences and mammals. Journal of Mammalogy 82:960-973.
-
(2001)
Journal of Mammalogy
, vol.82
, pp. 960-973
-
-
Bradley, R.D.1
Baker, R.J.2
-
6
-
-
11144243745
-
A new species of Peromyscus from western Mexico
-
BRADLEY, R. D., D. S. CARROLL, M. L. HAYNIE, R. MUÑIZ MARTÍNEZ, M. J. HAMILTON, AND C. W. KILPATRICK. 2004a. A new species of Peromyscus from western Mexico. Journal of Mammalogy 85:1184-1193.
-
(2004)
Journal of Mammalogy
, vol.85
, pp. 1184-1193
-
-
Bradley, R.D.1
Carroll, D.S.2
Haynie, M.L.3
Muñiz Martínez, R.4
Hamilton, M.J.5
Kilpatrick, C.W.6
-
7
-
-
2642542628
-
Phylogenetic relationships of neotomine-peromyscine rodents: Based on DNA sequences from the mitochondrial cytochrome b gene
-
BRADLEY, R. D., C. W. EDWARDS, D. S. CARROLL, AND C. W. KILPATRICK. 2004b. Phylogenetic relationships of neotomine-peromyscine rodents: based on DNA sequences from the mitochondrial cytochrome b gene. Journal of Mammalogy 85:389-395.
-
(2004)
Journal of Mammalogy
, vol.85
, pp. 389-395
-
-
Bradley, R.D.1
Edwards, C.W.2
Carroll, D.S.3
Kilpatrick, C.W.4
-
8
-
-
0033838169
-
Taxonomic status of Peromyscus boylii sacarensis: Inferences from DNA sequences of the mitochondrial cytochrome b gene
-
BRADLEY, R. D., I. TIEMANN-BOEGE, C. W. KILPATRICK, AND D. J. SCHMIDLY. 2000. Taxonomic status of Peromyscus boylii sacarensis: inferences from DNA sequences of the mitochondrial cytochrome b gene. Journal of Mammalogy 81:875-884.
-
(2000)
Journal of Mammalogy
, vol.81
, pp. 875-884
-
-
Bradley, R.D.1
Tiemann-Boege, I.2
Kilpatrick, C.W.3
Schmidly, D.J.4
-
9
-
-
43949160320
-
Branch support and tree stability
-
BREMER, K. 1994. Branch support and tree stability. Cladistics 10:295-304.
-
(1994)
Cladistics
, vol.10
, pp. 295-304
-
-
Bremer, K.1
-
10
-
-
0002580045
-
Systematics and evolution
-
(G. L. Kirkland, Jr., and J. N. Layne, eds.). Texas Tech University Press, Lubbock
-
CARLETON, M. D. 1989. Systematics and evolution. Pp. 7-142 in Advances in the study of Peromyscus (G. L. Kirkland, Jr., and J. N. Layne, eds.). Texas Tech University Press, Lubbock.
-
(1989)
Advances in the Study of Peromyscus
, pp. 7-142
-
-
Carleton, M.D.1
-
11
-
-
0020869892
-
Species concepts and speciation analysis
-
(R. F. Johnston, ed.), Plenum Publishing Corporation, New York
-
CRACRAFT, J. 1983. Species concepts and speciation analysis. Pp. 159-187 in Current ornithology (R. F. Johnston, ed.), Plenum Publishing Corporation, New York.
-
(1983)
Current Ornithology
, pp. 159-187
-
-
Cracraft, J.1
-
12
-
-
0007592434
-
Mitochondrial-DNA phylogeny of species of the boylii and truei groups of the genus Peromyscus
-
DEWALT, T. S., E. G. ZIMMERMAN, AND J. V. PLANZ. 1993. Mitochondrial-DNA phylogeny of species of the boylii and truei groups of the genus Peromyscus. Journal of Mammalogy 74: 352-362.
-
(1993)
Journal of Mammalogy
, vol.74
, pp. 352-362
-
-
Dewalt, T.S.1
Zimmerman, E.G.2
Planz, J.V.3
-
13
-
-
6744234019
-
An analysis of Peromyscus difficilis from the Mexican-United States boundary area
-
DIERSING, V. E. 1976. An analysis of Peromyscus difficilis from the Mexican-United States boundary area. Proceedings of the Biological Society of Washington 89:451-466.
-
(1976)
Proceedings of the Biological Society of Washington
, vol.89
, pp. 451-466
-
-
Diersing, V.E.1
-
14
-
-
0000110035
-
Mendelian populations and their evolution
-
DOBZHANSKY, T. 1950. Mendelian populations and their evolution. American Naturalist 74:312-321.
-
(1950)
American Naturalist
, vol.74
, pp. 312-321
-
-
Dobzhansky, T.1
-
15
-
-
0037329108
-
Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability
-
DOUADY, C. J., F. DELSUC, Y. BOUCHER, W. F. DOOLITTLE, AND E. J. P. DOUZERY. 2003. Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability. Molecular Biology and Evolution 20:248-254.
-
(2003)
Molecular Biology and Evolution
, vol.20
, pp. 248-254
-
-
Douady, C.J.1
Delsuc, F.2
Boucher, Y.3
Doolittle, W.F.4
Douzery, E.J.P.5
-
16
-
-
0034989537
-
Molecular phylogenetics of the Neotoma albigula species group: Further evidence of a paraphyletic assemblage
-
EDWARDS, C. W., C. F. FULHORST, AND R. D. BRADLEY. 2001. Molecular phylogenetics of the Neotoma albigula species group: further evidence of a paraphyletic assemblage. Journal of Mammalogy 82:267-279.
-
(2001)
Journal of Mammalogy
, vol.82
, pp. 267-279
-
-
Edwards, C.W.1
Fulhorst, C.F.2
Bradley, R.D.3
-
17
-
-
2642580809
-
-
Botaniska Institution, Stockholm University, Stockholm, Sweden
-
ERIKSSON, T. 1997. Autodecay 3.03. Botaniska Institution, Stockholm University, Stockholm, Sweden.
-
(1997)
Autodecay 3.03
-
-
Eriksson, T.1
-
18
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
FELSENSTEIN, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
19
-
-
0003947514
-
-
Allen Press, Lawrence, Kansas
-
HAFNER, M. S., W. L. GANNON, J. SALAZAR-BRAVO, AND S. T. ALVAREZ-CASTAÑEDA. 1997. Mammal collections in the western hemisphere: a survey and directory of existing collections. Allen Press, Lawrence, Kansas.
-
(1997)
Mammal Collections in the Western Hemisphere: A Survey and Directory of Existing Collections
-
-
Hafner, M.S.1
Gannon, W.L.2
Salazar-Bravo, J.3
Alvarez-Castañeda, S.T.4
-
20
-
-
0003226123
-
A taxonomic and evolutionary study of the piñon mouse, Peromyscus truei
-
HOFFMEISTER, D. F. 1951. A taxonomic and evolutionary study of the piñon mouse, Peromyscus truei. Illinois Biological Monographs 21:1-104.
-
(1951)
Illinois Biological Monographs
, vol.21
, pp. 1-104
-
-
Hoffmeister, D.F.1
-
21
-
-
11144244002
-
Geographic variation in the mouse Peromyscus difficilis
-
HOFFMEISTER, D. F., AND L. DE LA TORRE. 1961. Geographic variation in the mouse Peromyscus difficilis. Journal of Mammalogy 42:1-13.
-
(1961)
Journal of Mammalogy
, vol.42
, pp. 1-13
-
-
Hoffmeister, D.F.1
De La Torre, L.2
-
24
-
-
0014368964
-
Chromosomes of Peromyscus (Rodentia, Cricetidae) I. Evolutionary trends in 20 species
-
HSU, T. C., AND F. E. ARRIGHI. 1968. Chromosomes of Peromyscus (Rodentia, Cricetidae) I. Evolutionary trends in 20 species. Cytogenetics 7:417-446.
-
(1968)
Cytogenetics
, vol.7
, pp. 417-446
-
-
Hsu, T.C.1
Arrighi, F.E.2
-
25
-
-
0034849408
-
MrBayes: Bayesian inference for phylogeny
-
HUELSENBECK, J. P., AND F. R. RONQUIST. 2001. MrBayes: Bayesian inference for phylogeny. Biometrics 17:754-756.
-
(2001)
Biometrics
, vol.17
, pp. 754-756
-
-
Huelsenbeck, J.P.1
Ronquist, F.R.2
-
27
-
-
0000168713
-
Genic variation in the Peromyscus truei group (Rodentia: Cricetidae)
-
JANECEK, L. L. 1990. Genic variation in the Peromyscus truei group (Rodentia: Cricetidae). Journal of Mammalogy 71:301-308.
-
(1990)
Journal of Mammalogy
, vol.71
, pp. 301-308
-
-
Janecek, L.L.1
-
28
-
-
11144230045
-
-
Occasional Papers, The Museum, Texas Tech University
-
JOHNSON, G. L., AND R. L. PACKARD. 1974. Electrophoretic analysis of Peromyscus comanche Blair, with comments on its systematic status. Occasional Papers, The Museum, Texas Tech University 21:1-16.
-
(1974)
Electrophoretic Analysis of Peromyscus Comanche Blair, with Comments on Its Systematic Status
, vol.21
, pp. 1-16
-
-
Johnson, G.L.1
Packard, R.L.2
-
29
-
-
0000660898
-
Genetic variation and systematics of four species of mice of the Peromyscus boylii species group
-
KILPATRICK, C. W., AND E. G. ZIMMERMAN. 1975. Genetic variation and systematics of four species of mice of the Peromyscus boylii species group. Systematic Zoology 24:143-162.
-
(1975)
Systematic Zoology
, vol.24
, pp. 143-162
-
-
Kilpatrick, C.W.1
Zimmerman, E.G.2
-
30
-
-
0016991648
-
Biochemical variation and systematics of Peromyscus pectoralis
-
KILPATRICK, C. W., AND E. G. ZIMMERMAN. 1976. Biochemical variation and systematics of Peromyscus pectoralis. Journal of Mammalogy 57:506-522.
-
(1976)
Journal of Mammalogy
, vol.57
, pp. 506-522
-
-
Kilpatrick, C.W.1
Zimmerman, E.G.2
-
31
-
-
0019296687
-
A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
-
KIMURA, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16:111-120.
-
(1980)
Journal of Molecular Evolution
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
32
-
-
0001064118
-
Systematic implication of chromosomal banding analyses of populations of Peromyscus truei (Rodentia: Muridae)
-
MODI, W. S., AND M. R. LEE. 1984. Systematic implication of chromosomal banding analyses of populations of Peromyscus truei (Rodentia: Muridae). Proceedings of the Biological Society of Washington 97:716-723.
-
(1984)
Proceedings of the Biological Society of Washington
, vol.97
, pp. 716-723
-
-
Modi, W.S.1
Lee, M.R.2
-
33
-
-
0002542735
-
Family Muridae
-
(D. E. Wilson and D. M. Reeder, eds.). Smithsonian Institution Press, Washington, D.C.
-
MUSSER, G. G., AND M. D. CARLETON. 1993. Family Muridae. Pp. 501-755 in Mammal species of the world. 2nd ed. (D. E. Wilson and D. M. Reeder, eds.). Smithsonian Institution Press, Washington, D.C.
-
(1993)
Mammal Species of the World. 2nd Ed.
, pp. 501-755
-
-
Musser, G.G.1
Carleton, M.D.2
-
34
-
-
0001925399
-
Revision of the mice of the American genus Peromyscus
-
OSGOOD, W. H. 1909. Revision of the mice of the American genus Peromyscus. North American Fauna 28:1-285.
-
(1909)
North American Fauna
, vol.28
, pp. 1-285
-
-
Osgood, W.H.1
-
35
-
-
0034426270
-
Cryptic species in Sigmodon hispidus: Evidence from DNA sequences
-
PEPPERS, L. L., AND R. D. BRADLEY. 2000. Cryptic species in Sigmodon hispidus: evidence from DNA sequences. Journal of Mammalogy 81:332-343.
-
(2000)
Journal of Mammalogy
, vol.81
, pp. 332-343
-
-
Peppers, L.L.1
Bradley, R.D.2
-
36
-
-
0031773680
-
Modeltest: Testing the model of DNA substitution
-
POSADA, D., AND K. A. CRANDALL. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
37
-
-
0019781718
-
An assessment of the nature of rearrangements in eighteen species of Peromyscus (Rodentia: Cricetidae)
-
ROBBINS, L. W.2C AND R. J. BAKER. 1981. An assessment of the nature of rearrangements in eighteen species of Peromyscus (Rodentia: Cricetidae). Cytogenetics and Cell Genetics 31:194-202.
-
(1981)
Cytogenetics and Cell Genetics
, vol.31
, pp. 194-202
-
-
And, R.L.W.1
Baker, R.J.2
-
38
-
-
0000075718
-
Cytosystematic value of chromosomal inversion data in the genus Peromyscus
-
ROGERS, D. S., I. F. GREENBAUM, S. J. GUNN, AND M. D. ENGSTROM. 1984. Cytosystematic value of chromosomal inversion data in the genus Peromyscus. Journal of Mammalogy 65:457-465.
-
(1984)
Journal of Mammalogy
, vol.65
, pp. 457-465
-
-
Rogers, D.S.1
Greenbaum, I.F.2
Gunn, S.J.3
Engstrom, M.D.4
-
39
-
-
0023850178
-
Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase
-
SAIKI, R. K., ET AL. 1988. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:487-491.
-
(1988)
Science
, vol.239
, pp. 487-491
-
-
Saiki, R.K.1
-
40
-
-
0348003753
-
The systematic status of Peromyscus comanche
-
SCHMIDLY, D. J. 1973. The systematic status of Peromyscus comanche. Southwestern Naturalist 18:269-278.
-
(1973)
Southwestern Naturalist
, vol.18
, pp. 269-278
-
-
Schmidly, D.J.1
-
41
-
-
0007493273
-
-
Occasional Papers, The Museum, Texas Tech University
-
SCHMIDLY, D. J., M. R. LEE, W. S, MODI, AND E. G. ZIMMERMAN. 1985. Systematics and notes on the biology of Peromyscus hooperi. Occasional Papers, The Museum, Texas Tech University 97:1-40.
-
(1985)
Systematics and Notes on the Biology of Peromyscus Hooperi
, vol.97
, pp. 1-40
-
-
Schmidly, D.J.1
Lee, M.R.2
Modi, W.S.3
Zimmerman, E.G.4
-
42
-
-
0027138033
-
The diversification of South American rodents: Evidence from mitochondrial sequence data for the akodontine tribe
-
SMITH, M. F., AND J. L. PATTON. 1993. The diversification of South American rodents: evidence from mitochondrial sequence data for the akodontine tribe. Biological Journal of the Linnean Society 50:149-177.
-
(1993)
Biological Journal of the Linnean Society
, vol.50
, pp. 149-177
-
-
Smith, M.F.1
Patton, J.L.2
-
43
-
-
0003151432
-
Phylogenetic relationships and the radiation of sigmodontine rodents in South America: Evidence from cytochrome b
-
SMITH, M. F., AND J. L. PATTON. 1999. Phylogenetic relationships and the radiation of sigmodontine rodents in South America: evidence from cytochrome b. Journal of Mammalian Evolution 6:89-128.
-
(1999)
Journal of Mammalian Evolution
, vol.6
, pp. 89-128
-
-
Smith, M.F.1
Patton, J.L.2
-
44
-
-
0000618530
-
Evolutionary relationships in Peromyscus: Congruence in chromosomal, genic, and classical data sets
-
STANGL, F. B., JR., AND R. J. BAKER, 1984. Evolutionary relationships in Peromyscus: congruence in chromosomal, genic, and classical data sets. Journal of Mammalogy 65:643-654.
-
(1984)
Journal of Mammalogy
, vol.65
, pp. 643-654
-
-
Stangl Jr., F.B.1
Baker, R.J.2
-
45
-
-
0001528807
-
Biochemical systematics of the Peromyscus boylii species group
-
SULLIVAN, J. M., C. W. KILPATRICK, AND P. D. RENNERT. 1991. Biochemical systematics of the Peromyscus boylii species group. Journal of Mammalogy 72:669-680.
-
(1991)
Journal of Mammalogy
, vol.72
, pp. 669-680
-
-
Sullivan, J.M.1
Kilpatrick, C.W.2
Rennert, P.D.3
-
46
-
-
0031224772
-
Phylogeography and molecular systematics of the Peromyscus aztecus species group (Rodentia: Muridae) inferred using parsimony and likelihood
-
SULLIVAN, J. M., J. A. MARKERT, AND C. W. KILPATRICK. 1997. Phylogeography and molecular systematics of the Peromyscus aztecus species group (Rodentia: Muridae) inferred using parsimony and likelihood. Systematic Biology 46:426-440.
-
(1997)
Systematic Biology
, vol.46
, pp. 426-440
-
-
Sullivan, J.M.1
Markert, J.A.2
Kilpatrick, C.W.3
-
47
-
-
0004248459
-
-
Sinauer Associates, Inc., Publishers, Sunderland, Massachusetts
-
SWOFFORD, D. L. 2002. PAUP *: phylogenetic analysis using parsimony (* and other methods), Version 4.0b10. Sinauer Associates, Inc., Publishers, Sunderland, Massachusetts.
-
(2002)
PAUP *: Phylogenetic Analysis Using Parsimony (* and Other Methods), Version 4.0b10
-
-
Swofford, D.L.1
-
48
-
-
0033771565
-
Molecular phylogenetics of the Peromyscus boylii species group (Rodentia: Muridae) based on mitochondrial cytochrome b sequences
-
TIEMANN-BOEGE, I., C. W. KILPATRICK, D. J. SCHMIDLY, AND R. D. BRADLEY. 2000. Molecular phylogenetics of the Peromyscus boylii species group (Rodentia: Muridae) based on mitochondrial cytochrome b sequences. Molecular Phylogenetics and Evolution 16:366-378.
-
(2000)
Molecular Phylogenetics and Evolution
, vol.16
, pp. 366-378
-
-
Tiemann-Boege, I.1
Kilpatrick, C.W.2
Schmidly, D.J.3
Bradley, R.D.4
-
49
-
-
0016643269
-
Biochemical genetics of the boylii and truei groups of the genus Peromyscus (Rodentia)
-
ZIMMERMAN, E. G., B. J. HART, AND C. W. KILPATRICK. 1975. Biochemical genetics of the boylii and truei groups of the genus Peromyscus (Rodentia). Comparative Biochemical Physiology 52:541-545.
-
(1975)
Comparative Biochemical Physiology
, vol.52
, pp. 541-545
-
-
Zimmerman, E.G.1
Hart, B.J.2
Kilpatrick, C.W.3
-
50
-
-
0001584793
-
The genetics of speciation in the rodent genus Peromyscus
-
ZIMMERMAN, E. G., C. W. KILPATRICK, AND B. J. HART. 1978. The genetics of speciation in the rodent genus Peromyscus. Evolution 32:565-579.
-
(1978)
Evolution
, vol.32
, pp. 565-579
-
-
Zimmerman, E.G.1
Kilpatrick, C.W.2
Hart, B.J.3
|