The sugary-type isoamylase gene from rice and Aegilops tauschii: Characterization and comparison with maize and Arabidopsis

Genome

Volumn 46, Issue 3, 2003, Pages 496-506

  Rahman, S ^e   Nakamura, Y ^a   Li, Z ^e   Clarke, B ^e   Fujita, N ^a   Mukai, Y ^b   Yamamoto, M ^c   Regina, A ^e   Tan, Z ^d   Kawasaki, S ^d   Morell, M ^e  

^a AKITA PREFECTURAL UNIVERSITY   (Japan)

^b OSAKA KYOIKU UNIVERSITY   (Japan)

^c Kansai Women's College   (Japan)

^d NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^e NONE

Author keywords

FISH; Isoamylase; Rice; Sugary; Wheat

Indexed keywords

AMINO ACID SEQUENCE; ARABIDOPSIS; BLOTTING, NORTHERN; BLOTTING, SOUTHERN; CHROMOSOMES, PLANT; CLUSTER ANALYSIS; DNA PRIMERS; GENE EXPRESSION; IN SITU HYBRIDIZATION, FLUORESCENCE; ISOAMYLASE; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; POACEAE; SEQUENCE ANALYSIS, DNA; ZEA MAYS;

AEGILOPS TAUSCHII; ARABIDOPSIS; EMBRYOPHYTA; TRITICUM AESTIVUM; ZEA MAYS;

EID: 10744228156     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g02-130     Document Type: Article

References (36)

1. Ainsworth, C., Clarke, J., and Balsdon, J. 1993. Expression, organisation and structure of genes encoding the waxy protein (granule bound starch synthase) in wheat. Plant Mol. Biol. 22: 67-82.
2. Baga, M., Glaze, S., Mallard, C.S., and Chibbar, R. 1999. A starch-branching enzyme gene in wheat produces alternatively spliced transcripts. Plant Mol. Biol. 40: 1019-1030.
3. Ball, S., Guan, H.P., James, M., Myers, A., Keeling, P., Mouille, G., Buleon, A., Colonna, P., and Preiss, J. 1996. From glycogen to amylopectin: a model for the biogenesis of the plant starch granule. Cell, 86: 349-352.
4. Beatty, M.K., Rahman, A., Cao, H., Woodman, W., Lee, M., Myers, A.M., and James, M.G. 1999. Purification and molecular genetic characterisation of ZPU1, a pullulanase-type debranching enzyme from maize. Plant Physiol. 119: 255-266.
5. Black, R.C., Loerch, J.D., McArdle, F.J., and Creech, R.G. 1966. Genetic interactions affecting maize phytoglycogen and the phytoglycogen-forming branching enzyme. Genetics, 53: 661-668.
6. Burton, R.A., Zhang, X.Q., Hrmova, M., and Fincher, G.B. 1999. A single limit dextrinase gene is expressed both in the developing endosperm and in germinated grains of barley. Plant Physiol. 119: 859-872.
7. Burton, R.A., Jenner, H., Carrangis, L., Fahy, B., Fincher, G.B., Hylton, C.M., Laurie, D.A., Parker, M., Waite, D., van Wegen, S., Verhoeven, T., and Denyer, K. 2002. Starch granule initiation and growth are altered in barley mutants that lack isoamylase activity. Plant J. 31: 97-112.
8. Creech, R.G., and McArdle, F.J. 1966. Gene interaction for quantitative change in carbohydrates in maize kernels. Crop Sci. 6: 192-194.
9. Dauvillee, D., Colleoni, C., Mouille, G., Buleon, A., Gallant, D.J., Bouchet, B., Morell, M.K., d'Hulst, C., Myers, A.M., and Ball, S.G. 2001. Two loci control phytoglycogen production in the monocellular green algae Chlamydomonas reinhardtii. Plant Physiol. 125: 1710-1722.
10. Dauvillee, D., Mestre, V., Colleoni, C., Slomianny, M.C., Mouille, G., Delrue, B., d'Hulst, C., Bliard, C., Nuzillard, J.M., and Ball, S. 2000. The debranching enzyme complex missing in glycogen accumulating mutants of Chlamydomonas reinhardtii displays any isomaylase-type specificity. Plant Sci. 157: 145-156.
11. Emanuelsson, O., Nielsen, H., and von Heijne, G. 1999. ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites. Prot. Sci. 8: 978-984.
12. Fujita, N., Kubo, A., Fransisco, P.B., Nakakita, M., Harada, K., Minaka, N., and Nakamura, Y. 1999. Purification, characterisation and cDNA structure of isoamylase from developing endosperm of rice. Planta, 208: 283-293.
13. Fukui, K.N., Suzuki, G., Lagudah, E., Rahman, S., Appels, R., Yamamoto, M., and Mukai, Y. 2001. Physical arrangement of retrotransposon-related repeats in centromeric regions of wheat. Plant Cell Physiol. 42: 189-196.
14. Gale, M.D., and Devos, K.M. 1997. Homeologous group 7. In Joint Proceedings of the 5th and 6th Public Workshops of the International Triticeae Mapping Initiative. Edited by P.C. McGuire and C.O. Qualset. University of California at Davis. pp. 107-120.
15. Genschel, U., Abel, G., Lorz, H., and Lutticke, S. 2002. The sugary-type isoamylase in wheat: tissue distribution and subcellular localization. Planta, 214: 813-820.
16. Ishizaki, I., Taniguchi, H., Maruyama, Y., and Nakamura, M. 1983. Debranching enzymes of potato tubers (Solanum tuberosum L.). I. Purification and some properties of potato isoamylase. Agric. Biol. Chem. 47: 771-779.
17. James, M.G., Robertson, D.S., and Myers, A.M. 1995. Characterisation of the maize gene sugary1, a determinant of starch composition in kernels. Plant Cell, 7: 417-429.
18. Jesperson, H.M., MacGregor, E.A., Henrissat, B., Sierks, M.R., and Svensson, B. 1993. Starch and glycogen debranching and branching enzymes: Prediction of structural featuresutes of athe catalytic β/α barrel and evolutionary relationship to other amylolytic enzymes. J. Prot. Chem. 12: 791-805.
19. Kubo, A., Fujita, N., Harada, K., Satoh, H., and Nakamura, Y. 1999. The starch debranching enzymes isoamylase and pullulanase are both involved in amylopectin biosynthesis in rice endosperm. Plant Physiol. 121: 399-409.
20. Lagudah, E.S., Appels, R., and McNeil, D. 1991. The Nor-D3 locus of Triticum tauschii: natural variation and genetic linkage to markers in chromosome 5. Genome, 34: 387-395.
21. Li, Z., Rahman, S., Kosar-Hashemi, B., Mouille, G., Appels, R., and Morell, M.K. 1999. Cloning and characterisation of a gene encoding wheat starch synthase I. Theor. Appl. Genet. 98: 1208-1216.
22. Martin, C., and Smith, A.M. 1995. Starch biosynthesis. Plant Cell, 7: 971-985.
23. Matuo, T., Yano, M., Satoh, H., and Omura, T. 1987. Effects of sugary and shrunken mutant genes on carbohydrates in rice endosperm during ripening period. Jpn. J. Breed. 37: 17-21.
24. Moore, G., Devos, K.M., Wang, Z., and Gale, M.D. 1995. Grasses, line up and form a circle. Curr. Biol. 5: 737-739.
25. Nair, R., Baga, M., Scoles, G.J., Kartha, K., and Chibbar, R. 1997. Isolation, characterisation and expression analysis of a starch branching enzyme II cDNA from wheat. Plant Sci. 122: 153-163.
26. Nakamura, S., Asakawa, S., Ohmido, N., Fukui, K., Shimizu, N., and Kawasaki, S. 1997. Construction of an 800-kb contig in the near-centromeric region of the rice blast resistance gene Pi-Ta2 using a highly representative rice BAC library. Mol. Gen. Genet. 254: 611-620.
27. Neuffer, M.G., Coe, E.H., and Wessler, S.R. 1996. Mutants of maize. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
28. Rahman, S., Abrahams, S., Abbott, D., Mukai, Y., Samuel, M., Morell, M., and Appels, R. 1997. A complex arrangement of genes at a starch branching enzyme I locus in the D-genome donor of wheat. Genome, 40: 465-474.
29. Rahman, S., Li, Z., Abrahams, S.L., Abbott, D.C., Appels, R., and Morell, M.K. 1999. Characterisation of a gene encoding wheat endosperm starch branching enzyme-I. Theor. Appl. Genet. 98: 156-163.
30. Rahman, S., Ahmed, R., Li, Z., Mukai, Y., Yamamoto, M., Kosar-Hashemi, B., Abrahams, S.L., and Morell, M.K. 2001. Comparison of starch-branching enzyme genes reveals evolutionary relationships among isoforms. Characterisation of a gene for starch-branching enzyme IIa from the wheat D genome donor Aegilops tauschii. Plant Physiol. 125: 1314-1324.
31. Rayburn, A.L., and Gill, B.S. 1985. Molecular identification of the D-genome chromosomes of wheat. J. Hered. 77: 253-255.
32. Sears, E.R., and Miller, T.E. 1985. The history of Chinese Spring wheat. Cereal Res. Comm. 13: 261-263.
33. Sun, C., Sathish, P., Ahlandsberg, S., and Jansson, C. 1999. Analyses of isoamylase gene activity in wild-type barley indicate its involvement in starch synthesis. Plant Mol. Biol. 40: 431-443.
34. Thorbjornsen, T., Villand, P., Denyer, K., Olsen, O.A., and Smith A.M. 1996. Distinct forms of ADPglucose pyrophosphorylase occur inside and outside and the amyloplasts in barley endosperm. Plant J. 10: 243-250.
35. Turner, M., Mukai, Y., Leroy, P., Charef, B., Appels, R., and Rahman, S. 1999. The Ha locus of wheat: identification of a polymorphic region for tracing grain hardness in crosses. Genome, 42: 1-9.
36. Zeeman, S.C., Umemoto, T., Lue, W.L., Pui, A.Y., Martin, C., Smith, A.M., and Chen, J.C. 1998. A mutant of Arabidopsis lacking a chloroplastic isoamylase accumulates both starch and phytoglycogen. Plant Cell, 10: 1699-1711.