Identification of quantitative trait loci for production traits in commercial pig populations

Genetics

Volumn 164, Issue 2, 2003, Pages 621-627

  Evans, G J ^a   Giuffra, E ^b,h   Sanchez, A ^c   Kerje, S ^b   Davalos, G ^c   Vidal, O ^c   Illan S ^d   Noguera, J L ^e   Varona, L ^e   Velander, I ^f   Southwood, O I ^a   De Koning, D J ^g   Haley, C S ^g   Plastow, G S ^a   Andersson, L ^b  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^c UNIVERSITAT AUTÒNOMA DE BARCELONA   (Spain)

^d Poligono Industrial El Segre ^*  (Spain)

^e IRTA   (Spain)

^f Quality Genetics   (Sweden)

^g UNIVERSITY OF EDINBURGH   (United Kingdom)

^h LITA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ADIPOSE TISSUE; ALLELE; ANIMAL; ARTICLE; CHROMOSOME; COMMERCIAL PHENOMENA; FOOD INDUSTRY; GENE IDENTIFICATION; GENE LOCUS; GENE SEGREGATION; GENETIC LINKAGE; GENETIC MARKER; GENETIC SELECTION; GENETIC TRAIT; GENETIC VARIABILITY; GENETICS; GENOTYPE; GROWTH RATE; MARKER ASSISTED SELECTION; MEAT; MOLECULAR CLONING; NONHUMAN; OUTBREEDING; PATHOLOGY; PHENOTYPE; POPULATION GENETIC PARAMETERS; POPULATION GENETICS; PRIORITY JOURNAL; QUANTITATIVE TRAIT LOCUS; SEGREGATION ANALYSIS; SPECIES DIFFERENCE; STATISTICAL SIGNIFICANCE; SWINE; THICKNESS; ULTRASTRUCTURE;

ADIPOSE TISSUE; ALLELES; ANIMALS; CHROMOSOMES; FOOD INDUSTRY; GENETIC MARKERS; GENOTYPE; LINKAGE (GENETICS); MEAT; MEAT PRODUCTS; PHENOTYPE; QUANTITATIVE TRAIT LOCI; SPECIES SPECIFICITY; SWINE; VARIATION (GENETICS);

ANIMALIA; SUS SCROFA;

EID: 10744221719     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (37)

1. ANDERSSON, L., 2001 Genetic dissection of phenotypic diversity in farm animals. Nat. Rev. Genet. 2: 130-138.
2. ANDERSSON, L., C. S. HALEY, H. ELLEGREN, S. A. KNOTT, M. JOHANSSON et al., 1994 Genetic mapping of quantitative trait loci for growth and fatness in pigs. Science 263: 1771-1774.
3. ANDERSSON-EKLUND, L., L. MARKLUND, K. LUNDSTROM, C. S. HALEY, K. ANDERSSON et al., 1998 Mapping quantitative trait loci for carcass and meat quality traits in a wild boar X Large White intercross. J. Anim. Sci. 76: 694-700.
4. BIDANEL, J. P., D. MILAN, N. IANNUCCELLI, Y. AMIGUES, M. Y. BOSCHER et al., 2001 Detection of quantitative trait loci for growth and fatness in pigs. Genet. Sel. Evol. 33: 289-309.
5. BOVENHUIS, H., and R. J. SPELMAN, 2000 Selective genotyping to detect quantitative trait loci for multiple traits in outbred populations. J. Dairy Sci. 83: 173-180.
6. CASAS-CARRILLO, E., A. PRILL-ADAMS, S. G. PRICE, A. C. CLUTTER and B. W. KIRKPATRICK, 1997 Mapping genomic regions associated with growth rate in pigs. J. Anim. Sci. 75: 2047-2053.
7. CHATZIPLIS, D. G., and C. S. HALEY, 2000 Selective genotyping for QTL detection using sib pair analysis in outbred populations with hierarchical structures. Genet. Sel. Evol. 32: 547-560.
8. DE KONING, D. J., L. L. JANSS, A. P. RATTINK, P. A. VAN OERS, B. J. DE VRIES et al., 1999 Detection of quantitative trait loci for backfat thickness and intramuscular fat content in pigs (Sus scrofa). Genetics 152: 1679-1690.
9. DE KONING, D. J., Y. NAGAMINE, G. EVANS and C. S. HALEY, 2002 QTL detection in outbred populations; comparison of variance component and simple methods. Proceedings of 7th World Congress of Genetics Applied to Livestock Production. Montpellier, France, CD-ROM communication no. 21-16.
10. FUJII, J., K. OTSU, F. ZORZATO, S. DE LEON, V. K. KHANNA et al., 1991 Identification of a mutation in the porcine ryanodine receptor that is associated with malignant hyperthermia. Science 253: 448-451.
11. GEORGES, M., D. NIELSEN, M. MACKINNON, A. MISHRA, R. OKIMOTO et al., 1995 Mapping quantitative trait loci controlling milk production in dairy cattle by exploiting progeny testing. Genetics 139: 907-920.
12. GREEN, P., K. FALLS and S. CROOK, 1990 Documentation for CRI-MAP, Version 2.4. Washington University School of Medicine, St. Louis.
13. GRINDFLEK, E., J. SZYDA, Z. LIU and S. LIEN, 2001 Detection of quantitative trait loci for meat quality in a commercial slaughter pig cross. Mamm. Genome 12: 299-304.
14. GRISART, B., W. COPPIETERS, F. FARNIR, L. KARIM, C. FORD et al., 2002 Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Genome Res. 12: 222-231.
15. JEON, J.-T., Ö. CARLBORG, A. TÖRNSTEN, E. GIUFFRA, V. AMARGER et al., 1999 A paternally expressed QTL affecting skeletal and cardiac muscle mass in pigs maps to the IGF2 locus. Nat. Genet. 21: 157-158.
16. JEON, J.-T., V. AMARGER, A. ROBIC, C. ROGEL-GAILLARD, E. BONGCAM-RUDLOFF et al., 2001 Comparative analysis of a BAC contig of the porcine RN region and the human transcript map: implications for the cloning of trait loci. Genomics 72: 297-303.
17. KNOTT, S. A., J. M. ELSEN and C. S. HALEY, 1996 Methods for multiple-marker mapping of quantitative trait loci in half-sib populations. Theor. Appl. Genet. 93: 71-80.
18. KNOTT, S. A., L. MARKLUND, C. S. HALEY, K. ANDERSSON, W. DAVIES et al., 1998 Multiple marker mapping of quantitative trait loci in a cross between outbred wild boar and large white pigs. Genetics 149: 1069-1080.
19. LANDER, E. S., and D. BOTSTEIN, 1989 Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121: 185-199.
20. MALEK, M., J. C. DEKKERS, H. K. LEE, T. J. BAAS, K. PRUSA et al., 2001a A molecular genome scan analysis to identify chromosomal regions influencing economic traits in the pig. II. Meat and muscle composition. Mamm. Genome 12: 637-645.
21. MALEK, M., J. C. DEKKERS, H. K. LEE, T. J. BAAS and M. F. ROTHSCHILD, 2001b A molecular genome scan analysis to identify chromosomal regions influencing economic traits in the pig. I. Growth and body composition. Mamm. Genome 12: 630-636.
22. NAGAMINE, Y., C. S. HALEY, A. SEWALEM and P. M. VISSCHER, 2003 Quantitative trait loci variation for growth and obesity between and within lines of pigs (Sus scrofa). Genetics 164: 629-635.
23. NEZER, C., L. MOREAU, B. BROUWERS, W. COPPIETERS, J. DETILLEUX et al., 1999 An imprinted QTL with major effect on muscle mass and fat deposition maps to the IGF2 locus in pigs. Nat. Genet. 21: 155-156.
24. O'BRIEN, S. J., M. MENOTTI-RAYMOND, W. J. MURPHY, W. G. NASH, J. WIENBERG et al., 1999 The promise of comparative genomics in mammals. Science 286: 458-462.
25. OVILO, C., M. PEREZ-ENCISO, C. BARRAGAN, A. CLOP, C. RODRIQUEZ et al., 2000 A QTL for intramuscular fat and backfat thickness is located on porcine chromosome 6. Mamm. Genome 11: 344-346.
26. PATERSON, A. H., E. S. LANDER, J. D. HEWITT, S. PETERSON, S. E. LINCOLN et al., 1988 Resolution of quantitative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms. Nature 335: 721-726.
27. PEREZ-ENCISO, M., A. CLOP, J. L. NOGUERA, C. OVILO, A. COLL et al., 2000 A QTL on pig chromosome 4 affects fatty acid metabolism: evidence from an Iberian by Landrace intercross. J. Anim. Sci. 78: 2525-2531.
28. ROHRER, G. A., and J. W. KEELE, 1998a Identification of quantitative trait loci affecting carcass composition in swine. I. Fat deposition traits. J. Anim. Sci. 76: 2247-2254.
29. ROHRER, G. A., and J. W. KEELE, 1998b Identification of quantitative trait loci affecting carcass composition in swine: II. Muscling and wholesale product yield traits. J. Anim. Sci. 76: 2255-2262.
30. ROTHSCHILD, M. F., and G. PLASTOW, 1999 Advances in pig genomics and industry applications. Ag. Biotech. Net. 1: 1-8.
31. SAX, K., 1923 The association of size differences with seed-coat pattern and pigmentation in Phaseolus vulgaris. Genetics 8: 552-560.
32. SCHOOK, L. B., M. S. RUTHERFORD, J.-K. LEE, Y.-C. SHIA, M. BRADSHAW et al., 1996 The swine major histocompatibility complex, pp. 213-243 in The Major Histocompatibility Complex Region of Domestic Animal Species, edited by L. B. SCHOOK and S. J. LAMONT. CRC Press, Boca Raton, FL.
33. SEATON, G., C. S. HALEY, S. A. KNOTT, M. KEARSEY and P. M. VISSCHER, 2002 QTL express: mapping quantitative trait loci in simple and complex pedigrees. Bioinformatics 18: 339-340.
34. THODAY, J. M., 1961 Location of polygenes. Nature 191: 368-370.
35. WALLING, G. A., P. M. VISSCHER, L. ANDERSSON, M. F. ROTHSCHILD, L. WANG et al., 2000 Combined analyses of data from quantitative trait loci mapping studies. Chromosome 4 effects on porcine growth and fatness. Genetics 155: 1369-1378.
36. WINTER, A., W. KRAMER, F. A. WERNER, S. KOLLERS, S. KATA et al., 2002 Association of a lysine-232/alanine polymorphism in a bovine gene encoding acyl-CoA:diacylglycerol acyltransferase (DGAT1) with variation at a quantitative trait locus for milk fat content. Proc. Natl. Acad. Sci. USA 99: 9300-9305.
37. YU, T. P., C. K. TUGGLE, C. B. SCHMITZ and M. F. ROTHSCHILD, 1995 Association of PIT1 polymorphisms with growth and carcass traits in pigs. J. Anim. Sci. 73: 1282-1288.