Development and amplification of multiple co-dominant genetic markers from single spores of arbuscular mycorrhizal fungi by nested multiplex PCR

Fungal Genetics and Biology

Volumn 42, Issue 1, 2005, Pages 73-80

  Stukenbrock, Eva H ^a   Rosendahl, Søren ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

Arbuscular mycorrhiza; Multiple genetic markers; Multiplex PCR; Single copy genes; Single spores

Indexed keywords

ARBUSCULAR MYCORRHIZA; ARTICLE; FUNGUS SPORE; GENE AMPLIFICATION; GENE FREQUENCY; GENE SEQUENCE; GENETIC MARKER; GLOMUS CALEDONIUM; GLOMUS GEOSPORUM; GLOMUS MOSSEAE; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; POLYMORPHIC LOCUS; PRIORITY JOURNAL; SINGLE STRAND CONFORMATION POLYMORPHISM;

1-PHOSPHATIDYLINOSITOL 3-KINASE; ALLELES; CELL CYCLE PROTEINS; DNA, FUNGAL; DNA, RIBOSOMAL; FUNGAL PROTEINS; GENES, DOMINANT; GENES, FUNGAL; GENETIC MARKERS; GENOTYPE; MOLECULAR SEQUENCE DATA; MYCOLOGICAL TYPING TECHNIQUES; MYCORRHIZAE; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE-STRANDED CONFORMATIONAL; SEQUENCE ANALYSIS, DNA; SPORES, FUNGAL;

FUNGI; GLOMUS; GLOMUS CALEDONIUM; GLOMUS GEOSPORUM; GLOMUS MOSSEAE;

EID: 10444235615     PISSN: 10871845     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.fgb.2004.10.004     Document Type: Article

References (31)

1. S. Banke, and S. Rosendahl Development of genetic markers for population studies of Penicillium spp R.A. Samson J.I. Pitt Integration of Modern Taxonomic Methods for Penicillium and Aspergillus Classification 2000 Harwood New york 199 208
2. S. Banke, A. Peschon, and B.A. McDonald Phylogenetic analysis of globally distributed Mycosphaerella graminicola populations based on three DNA sequence loci Fungal Genetics and Biology 41 2004 226 238
3. G. Bécard, and Y. Piché Establishment of vesicular-arbuscular mycorrhiza in root organ culture: review and proposed methodology Methods in Microbiology 24 1992 89 108
4. E.M. Elnifro, A.M. Ashshi, R. Cooper, and P. Klapper Multiplex PRC: optimization and application in diagnostic virology Clinical Microbiology Reviews 2000 559 570
5. J.A. Fortin, G. Becard, S. Declerck, Y. Dalpe, M. St-Arnaud, A.P. Coughlan, and Y. Piche Arbuscular mycorrhiza on root-organ cultures Canadian Journal of Botany 80 1 2002 1 20
6. J. Gillespie The Evolutionary Advantage of Sex Population Genetics: A Concise Guide 1998 Johns Hopkins University press Baltimore, MD
7. T. Helgason, I.J. Watson, and J.P.W. Young Phylogeny of the Glomerales and diversisporales (Fungi: Glomeromycota) from actin and elongation factor 1-alpha sequences FEMS Microbiology Letters 229 1-2 2003 127 132
8. M. Hijri, and I.R. Sanders The arbuscular mycorrhizal fungus Glomus intraradices is haploid and has a small genome size in the lower limit of eukaryotes Fungal Genetics and Biology 41 2 2003 253 261
9. R. Kjøller, and S. Rosendahl Detection of arbuscular mycorrhizal fungi (Glomales) in roots by nested PCR (polymerase chain reaction) and SSCP (single stranded conformation polymorphism) Plant and Soil 226 2000 189 196
10. A.M. Koch, G. Kuhn, P. Fontanillas, L. Fumagalli, J. Goudet, and I.R. Sanders High genetic variability and low local diversity in arbuscular mycorrhizal fungal population Proceedings of the National Academy of Sciences of the United States of America 101 8 2004 2369 2374
11. G. Kuhn, M. Hijri, and I.R. Sanders Evidence for the evolution of multiple genomes in arbuscular mycorrhizal fungi Nature 414 2001 745 748
12. T.O. Messmer, S.K. Skelton, J.F. Moroney, H. Daugharty, and B. Fields Application of a nested multiplex PCR to psittacosis outbreaks Journal of Clinical Microbiology 1997 2043 2046
13. J.B. Morton, and G.L. Benny Revised classification of arbuscular mycorrhizal fungi (Zygomycetes): a new order, Glomales, two new suborders, Glomineae and Gigasporineae, and two new families, Acaulosporaceae and Gigasporaceae, with an emendation of Glomaceae Mycotaxon 37 1990 471 491
14. U.G. Mueller, and L. Wolfenbarger AFLP genotyping and finger printing Trends in Ecology and Evolution 14 1999 389 394
15. L. Munkvold, R. Kjøller, M. Vestberg, S. Rosendahl, and I. Jakobsen High functional diversity in mycorrhizal fungi despite low species diversity New Phytologist 164 2004 357 364
16. T.E. Pawlowska, and J. Taylor Organization of genetic variation within individuals of arbuscular mycorrhizal fungi Nature 427 2004 733 737
17. A. Pringle, J.M. Moncalvo, and R. Vilgalys High levels of variation in ribosomal DNA sequences within and among spores of a natural population of the arbuscular mycorrhizal fungus Acaulospora colossica Mycologia 92 2000 259 268
18. N. Requena, P. Füller, and P. Franken GmFOX2 a highly conserved gene from endomycorrhiza is down regulated during pre-symbiosis in response to rhizobacteria Molecular Plant Microbe Interactions 12 1999 934 942
19. N. Requena, P. Mann, and P. Franken A homologue of the cell cycle check point TOR2 from Saccharomyces cerevisiae exists in the arbuscular mycorrhizal fungus Glomus mosseae Protoplasma 212 2000 89 98
20. N. Requena, P. Mann, R. Hampp, and P. Franken Early developmentally regulated genes in the arbuscular mycorrhizal fungus Glomus mosseae: identification of GmGIN1, a novel gene with homology to the C-terminus of metazoan hedgehog proteins Plant and Soil 224 2002 129 139
21. S. Rosendahl, and E.H. Stukenbrock Community structure of arbuscular mycorrhizal fungi in undisturbed vegetation revealed by analyses of LSU rDNA sequences Molecular Ecology 13 2004 3179 3186
22. S. Rosendahl, and J.W. Taylor Development of multiple genetic markers for studies of genetic variation in arbuscular mycorrhizal fungi using AFLP Molecular Ecology 6 1997 821 829
23. J.M. Rubio, A. Benito, P.J. Berzosa, J. Roche, S. Puente, M. Subirats, R. Lópes-Vélez, L. Garcia, and J. Alvar Usefulness of seminested multiplex PCR in surveillance of imported malaria in Spain Journal of Clinical Microbiology 37 10 1999 3260 3264
24. Sanders, I.R., 2004. Intra-specific genetic variation in arbuscular mycorrhizal fungi and its consequences for molecular biology, ecology and development of inoculum. The Fourth International Conference On Mycorrhizae (ICOM 4), Montreal
25. A. Schüssler, D. Schwarzott, and C. Walker A new fungal phylum, the Glomeromycota: phylogeny and evolution Mycological Research 105 2001 1413 1421
26. S.E. Smith, and D.J. Read Mycorrhizal Symbiosis second Ed. 1997 Academic Press San Diego, CA, USA
27. J.W. Taylor, and M. Fischer Fungal multilocus sequence typing-it's not just for bacteria Current Opinion in Microbiology 6 2003 351 356
28. P. Vandenkoornhuyse, C. Leyval, and I. Bonnin High genetic diversity in arbuscular mycorrhizal fungi: evidence for recombination events Heredity 2001 87:243 253
29. D. van Tuinen, E. Jacquot, B. Zhao, A. Gollotte, and V. Gianinazzi-Pearson Characterization of root profiles by a comparison of microcosm community of arbuscular mycorrhizal fungi using25S rDNA targeted nested PCR Molecular Ecology 7 1998 879 887
30. D. van Tuinen, B. Zhao, and V. Gianinazzi-Pearson PCR in studies of AM fungi: from primers to application A.K. Varma Mycorrhiza Manual 1998 Springer-Verlag Heidelberg 387 399
31. D. Zhang, and G.M. Hewitt Nuclear DNA analyses in genetic studies of populations; practices, problems and prospects Molecular Ecology 12 2003 563 584