-
1
-
-
13144252236
-
Multilocus sequence typing - A portable approach to the identification of clones within populations of pathogenic microorganisms
-
Maiden MCJ, Bygraves JA, Feil E, Morelli G, Russell JE, Urwin R, Zhang Q, Zhou JJ, Zurth K, Caugant DA et al.: Multilocus sequence typing - a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci USA 1998, 95:3140-3145.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 3140-3145
-
-
Maiden, M.C.J.1
Bygraves, J.A.2
Feil, E.3
Morelli, G.4
Russell, J.E.5
Urwin, R.6
Zhang, Q.7
Zhou, J.J.8
Zurth, K.9
Caugant, D.A.10
-
2
-
-
0030995435
-
Concordance of gene genealogies reveals reproductive isolation in the pathogenic fungus Coccidioides immitis
-
Koufopanou V, Burt A, Taylor JW: Concordance of gene genealogies reveals reproductive isolation in the pathogenic fungus Coccidioides immitis. Proc Natl Acad Sci USA 1997, 94:5478-5482.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 5478-5482
-
-
Koufopanou, V.1
Burt, A.2
Taylor, J.W.3
-
3
-
-
0032493458
-
Correction: Concordance of gene genealogies reveals reproductive isolation in the pathogenic fungus Coccidioides immitis
-
Koufopanou V, Burt A, Taylor JW: Correction: Concordance of gene genealogies reveals reproductive isolation in the pathogenic fungus Coccidioides immitis. Proc Natl Acad Sci USA 1998, 95:8414.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 8414
-
-
Koufopanou, V.1
Burt, A.2
Taylor, J.W.3
-
4
-
-
0035046735
-
A microbial population-species interface: Nested cladistic and coalescent inference with multilocus data
-
Carbone I, Kohn LM: A microbial population-species interface: nested cladistic and coalescent inference with multilocus data. Mol Ecol 2001, 10:947-964.
-
(2001)
Mol Ecol
, vol.10
, pp. 947-964
-
-
Carbone, I.1
Kohn, L.M.2
-
5
-
-
0037304941
-
Multilocus sequence typing suggests the chytrid pathogen of amphibians is a recently emerged clone
-
Morehouse EA, James TY, Ganley ARD, Vilgalys R, Berger L, Murphy PJ, Longcore JE: Multilocus sequence typing suggests the chytrid pathogen of amphibians is a recently emerged clone. Mol Ecol 2003, 12:395-403.
-
(2003)
Mol Ecol
, vol.12
, pp. 395-403
-
-
Morehouse, E.A.1
James, T.Y.2
Ganley, A.R.D.3
Vilgalys, R.4
Berger, L.5
Murphy, P.J.6
Longcore, J.E.7
-
6
-
-
0035156156
-
Infrequent genetic exchange and recombination in the mitochondrial genome of Candida albicans
-
Anderson JB, Wickens C, Khan M, Cowen LE, Federspiel N, Jones T, Kohn LM: Infrequent genetic exchange and recombination in the mitochondrial genome of Candida albicans. J Bacteriol 2001, 183:865-872. The authors combined analysis of nuclear and mitochondrial DNA variation and proposed that evidence for recombination in natural individuals of this morphologically asexual fungus reflects ancient matings and that recent reproduction is exclusively clonal.
-
(2001)
J Bacteriol
, vol.183
, pp. 865-872
-
-
Anderson, J.B.1
Wickens, C.2
Khan, M.3
Cowen, L.E.4
Federspiel, N.5
Jones, T.6
Kohn, L.M.7
-
7
-
-
0036204680
-
Usefulness of multilocus sequence typing for characterization of clinical isolates of Candida albicans
-
Bougnoux ME, Morand S, d'Enfert C: Usefulness of multilocus sequence typing for characterization of clinical isolates of Candida albicans. J Clin Microbiol 2002, 40:1290-1297.
-
(2002)
J Clin Microbiol
, vol.40
, pp. 1290-1297
-
-
Bougnoux, M.E.1
Morand, S.2
D'Enfert, C.3
-
8
-
-
0030071746
-
Molecular markers reveal cryptic sex in the human pathogen Coccidioides immitis
-
Burt A, Carter DA, Koenig GL, White TJ, Taylor JW: Molecular markers reveal cryptic sex in the human pathogen Coccidioides immitis. Proc Natl Acad Sci USA 1996, 93:770-773.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 770-773
-
-
Burt, A.1
Carter, D.A.2
Koenig, G.L.3
White, T.J.4
Taylor, J.W.5
-
9
-
-
0035836696
-
Biogeographic range expansion into South America by Coccidioides immitis mirrors New World patterns of human migration
-
Fisher MC, Koenig GL, White TJ, San-Blas G, Negroni R, Alvarez IG, Wanke B, Taylor JW: Biogeographic range expansion into South America by Coccidioides immitis mirrors New World patterns of human migration. Proc Natl Acad Sci USA 2001, 98:4558-4562. The authors used hypervariable markers, microsatellites and a collection of 167 individuals from throughout the range of the fungus. The microsatellites recognize populations that correlate with geographic distance, showing that fungal populations may occupy ranges smaller than might be guessed from their potential for dispersal. The data also point to a recent migration of the fungus into Latin America.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 4558-4562
-
-
Fisher, M.C.1
Koenig, G.L.2
White, T.J.3
San-Blas, G.4
Negroni, R.5
Alvarez, I.G.6
Wanke, B.7
Taylor, J.W.8
-
10
-
-
0033067499
-
Patterns of descent in clonal lineages and their multilocus fingerprints are resolved with combined gene genealogies
-
Carbone I, Anderson JB, Kohn LM: Patterns of descent in clonal lineages and their multilocus fingerprints are resolved with combined gene genealogies. Evolution 1999, 53:11-21.
-
(1999)
Evolution
, vol.53
, pp. 11-21
-
-
Carbone, I.1
Anderson, J.B.2
Kohn, L.M.3
-
11
-
-
0001446750
-
Molecular phylogeny of the Nectria haematococca-Fusarium solani species complex
-
O'Donnell K: Molecular phylogeny of the Nectria haematococca-Fusarium solani species complex. Mycologia 2000, 92:919-938.
-
(2000)
Mycologia
, vol.92
, pp. 919-938
-
-
O'Donnell, K.1
-
12
-
-
0036862884
-
Cryptic speciation in Fusarium subglutinans
-
Steenkamp ET, Wingfield BD, Desjardins AE, Marasas WFO, Wingfield MJ: Cryptic speciation in Fusarium subglutinans. Mycologia 2002, 94:1032-1043.
-
(2002)
Mycologia
, vol.94
, pp. 1032-1043
-
-
Steenkamp, E.T.1
Wingfield, B.D.2
Desjardins, A.E.3
Marasas, W.F.O.4
Wingfield, M.J.5
-
13
-
-
0033675677
-
Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans
-
Xu JP, Vilgalys R, Mitchell TG: Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans. Mol Ecol 2000, 9:1471-1481.
-
(2000)
Mol Ecol
, vol.9
, pp. 1471-1481
-
-
Xu, J.P.1
Vilgalys, R.2
Mitchell, T.G.3
-
14
-
-
0031940433
-
Cryptic speciation and recombination in the aflatoxin producing fungus Aspergillus flavus
-
Geiser DM, Pitt JI, Taylor JW: Cryptic speciation and recombination in the aflatoxin producing fungus Aspergillus flavus. Proc Natl Acad Sci USA 1998, 95:388-393.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 388-393
-
-
Geiser, D.M.1
Pitt, J.I.2
Taylor, J.W.3
-
15
-
-
0032925659
-
The evolutionary biology and population genetics underlying fungal strain typing
-
Taylor JW, Geiser DM, Burt A, Koufopanou V: The evolutionary biology and population genetics underlying fungal strain typing. Clin Microbiol Rev 1999, 12:126-146.
-
(1999)
Clin Microbiol Rev
, vol.12
, pp. 126-146
-
-
Taylor, J.W.1
Geiser, D.M.2
Burt, A.3
Koufopanou, V.4
-
16
-
-
0031213585
-
Molecular markers reveal differentiation among isolates of Coccidioides immitis from California, Arizona and Texas
-
Burt A, Dechairo BM, Koenig GL, Carter DA, White TJ, Taylor JW: Molecular markers reveal differentiation among isolates of Coccidioides immitis from California, Arizona and Texas. Mol Ecol 1997, 6:781-786.
-
(1997)
Mol Ecol
, vol.6
, pp. 781-786
-
-
Burt, A.1
Dechairo, B.M.2
Koenig, G.L.3
Carter, D.A.4
White, T.J.5
Taylor, J.W.6
-
17
-
-
0029100965
-
Candida dubliniensis sp. nov.: Phenotypic and molecular characterization of a novel species associated with oral candidosis in HIV-infected individuals
-
Sullivan DJ, Westerneng TJ, Haynes KA, Bennett DE, Coleman DC: Candida dubliniensis sp. nov.: phenotypic and molecular characterization of a novel species associated with oral candidosis in HIV-infected individuals. Microbiology 1995, 141:1507-1521.
-
(1995)
Microbiology
, vol.141
, pp. 1507-1521
-
-
Sullivan, D.J.1
Westerneng, T.J.2
Haynes, K.A.3
Bennett, D.E.4
Coleman, D.C.5
-
18
-
-
0033041535
-
Phylogenetic relationships of varieties and geographical groups of the human pathogenic fungus Histoplasma capsulatum Darling
-
Kasuga T, Taylor JW, White TJ: Phylogenetic relationships of varieties and geographical groups of the human pathogenic fungus Histoplasma capsulatum Darling. J Clin Microbiol 1999, 37:653-663.
-
(1999)
J Clin Microbiol
, vol.37
, pp. 653-663
-
-
Kasuga, T.1
Taylor, J.W.2
White, T.J.3
-
19
-
-
0033058352
-
Cryptococcus neoformans var. grubii: Separate varietal status for Cryptococcus neoformans serotype A isolates
-
Franzot SP, Salkin IF, Casadevall A: Cryptococcus neoformans var. grubii: separate varietal status for Cryptococcus neoformans serotype A isolates. J Clin Microbiol 1999, 37:838-840.
-
(1999)
J Clin Microbiol
, vol.37
, pp. 838-840
-
-
Franzot, S.P.1
Salkin, I.F.2
Casadevall, A.3
-
20
-
-
0036767866
-
Cryptic species in Stachybotrys chartarum
-
Cruse M, Telerant R, Gallagher T, Lee T, Taylor JW: Cryptic species in Stachybotrys chartarum. Mycologia 2002, 94:814-822.
-
(2002)
Mycologia
, vol.94
, pp. 814-822
-
-
Cruse, M.1
Telerant, R.2
Gallagher, T.3
Lee, T.4
Taylor, J.W.5
-
21
-
-
0032478185
-
Multiple evolutionary origins of the fungus causing Panama disease of banana: Concordant evidence from nuclear and mitochondrial gene genealogies
-
O'Donnell K, Kistler HC, Cigelink E, Ploetz RC: Multiple evolutionary origins of the fungus causing Panama disease of banana: Concordant evidence from nuclear and mitochondrial gene genealogies. Proc Natl Acad Sci USA 1998, 95:2044-2049.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 2044-2049
-
-
O'Donnell, K.1
Kistler, H.C.2
Cigelink, E.3
Ploetz, R.C.4
-
22
-
-
0007446284
-
Soil isolation and molecular identification of Coccidioides immmitis
-
Greene DR, Koenig G, Fisher MC, Taylor JW: Soil isolation and molecular identification of Coccidioides immmitis. Mycologia 2000, 92:406-410.
-
(2000)
Mycologia
, vol.92
, pp. 406-410
-
-
Greene, D.R.1
Koenig, G.2
Fisher, M.C.3
Taylor, J.W.4
-
23
-
-
0033966917
-
Pathogenic clones versus environmentally driven population increase: Analysis of an epidemic of the human fungal pathogen Coccidioides immitis
-
Fisher MC, Koenig GL, White TJ, Taylor JW: Pathogenic clones versus environmentally driven population increase: Analysis of an epidemic of the human fungal pathogen Coccidioides immitis. J Clin Microbiol 2000, 38:807-813.
-
(2000)
J Clin Microbiol
, vol.38
, pp. 807-813
-
-
Fisher, M.C.1
Koenig, G.L.2
White, T.J.3
Taylor, J.W.4
-
24
-
-
0034500354
-
Phylogenetic species recognition and species concepts in fungi
-
Taylor JW, Jacobson DJ, Kroken S, Kasuga T, Geiser DM, Hibbett DS, Fisher MC: Phylogenetic species recognition and species concepts in fungi. Fungal Genet Biol 2000, 31:21-32.
-
(2000)
Fungal Genet Biol
, vol.31
, pp. 21-32
-
-
Taylor, J.W.1
Jacobson, D.J.2
Kroken, S.3
Kasuga, T.4
Geiser, D.M.5
Hibbett, D.S.6
Fisher, M.C.7
-
25
-
-
0036067301
-
Molecular and phenotypic description of Coccidioides posadasii sp nov., previously recognized as the non-California population of Coccidioides immitis
-
Fisher MC, Koenig GL, White TJ, Taylor JT: Molecular and phenotypic description of Coccidioides posadasii sp nov., previously recognized as the non-California population of Coccidioides immitis. Mycologia 2002, 94:73-84.
-
(2002)
Mycologia
, vol.94
, pp. 73-84
-
-
Fisher, M.C.1
Koenig, G.L.2
White, T.J.3
Taylor, J.T.4
-
26
-
-
0034942559
-
Gene genealogies, cryptic species, and molecular evolution in the human pathogen Coccidioides immitis and relatives (Ascomycota, Onygenales)
-
Koufopanou V, Burt A, Szaro T, Taylor John W: Gene genealogies, cryptic species, and molecular evolution in the human pathogen Coccidioides immitis and relatives (Ascomycota, Onygenales). Mol Biol Evol 2001, 18:1246-1258.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1246-1258
-
-
Koufopanou, V.1
Burt, A.2
Szaro, T.3
Taylor John, W.4
-
27
-
-
0037423837
-
Traces of human migrations in Helicobacter pylori populations
-
Falush D, Wirth T, Linz B, Pritchard JK, Stephens M, Kidd M, Blaser MJ, Graham DY, Vacher S, Perez-Perez GI et al.: Traces of human migrations in Helicobacter pylori populations. Science 2003, 299:1582-1585.
-
(2003)
Science
, vol.299
, pp. 1582-1585
-
-
Falush, D.1
Wirth, T.2
Linz, B.3
Pritchard, J.K.4
Stephens, M.5
Kidd, M.6
Blaser, M.J.7
Graham, D.Y.8
Vacher, S.9
Perez-Perez, G.I.10
-
28
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
Pritchard JK, Stephens M, Donnelly P: Inference of population structure using multilocus genotype data. Genetics 2000, 155:945-959.
-
(2000)
Genetics
, vol.155
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, M.2
Donnelly, P.3
-
29
-
-
0030931719
-
Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination
-
Sreevatsan S, Pan X, Stockbauer KE, Connell ND, Kreiswirth BN, Whittam TS, Musser JM: Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. Proc Natl Acad Sci USA 1997, 94:9869-9874.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 9869-9874
-
-
Sreevatsan, S.1
Pan, X.2
Stockbauer, K.E.3
Connell, N.D.4
Kreiswirth, B.N.5
Whittam, T.S.6
Musser, J.M.7
-
30
-
-
0023738045
-
Numeric index of the discriminatory ability of typing systems: An application of Simpson's index of diversity
-
Hunter PR, Gaston MA: Numeric index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol 1988, 26:2465-2466.
-
(1988)
J Clin Microbiol
, vol.26
, pp. 2465-2466
-
-
Hunter, P.R.1
Gaston, M.A.2
-
31
-
-
0026769505
-
Instability of simple sequence DNA in Saccharomyces cerevisiae
-
Henderson ST, Petes TD: Instability of simple sequence DNA in Saccharomyces cerevisiae. Mol Cell Biol 1992, 12:2749-2757.
-
(1992)
Mol Cell Biol
, vol.12
, pp. 2749-2757
-
-
Henderson, S.T.1
Petes, T.D.2
-
32
-
-
0033860299
-
A test for concordance between the multilocus genealogies of genes and microsatellites in the pathogenic fungus Coccidioides immitis
-
Fisher MC, Koenig G, White TJ, Taylor JW: A test for concordance between the multilocus genealogies of genes and microsatellites in the pathogenic fungus Coccidioides immitis. Mol Biol Evol 2000, 17:1164-1174.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1164-1174
-
-
Fisher, M.C.1
Koenig, G.2
White, T.J.3
Taylor, J.W.4
-
33
-
-
0033995960
-
Coccidioidomycosis in New York State
-
Chaturvedi V, Ramani R, Gromadzki S, Rodeghier B, Chang HG, Morse DL: Coccidioidomycosis in New York State. Emerg Infect Dis 2000, 6:25-29.
-
(2000)
Emerg Infect Dis
, vol.6
, pp. 25-29
-
-
Chaturvedi, V.1
Ramani, R.2
Gromadzki, S.3
Rodeghier, B.4
Chang, H.G.5
Morse, D.L.6
-
34
-
-
0037173005
-
Disease surveillance in recombining pathogens: Multilocus genotypes identify sources of human Coccidioides infections
-
Fisher MC, Rannala B, Chaturvedi V, Taylor JW: Disease surveillance in recombining pathogens: Multilocus genotypes identify sources of human Coccidioides infections. Proc Natl Acad Sci USA 2002, 99:9067-9071.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 9067-9071
-
-
Fisher, M.C.1
Rannala, B.2
Chaturvedi, V.3
Taylor, J.W.4
|