The anticodon loop is a major identity determinant of saccharomyces cerevisiae tRNA(Leu)

Journal of Molecular Biology

Volumn 263, Issue 5, 1996, Pages 707-714

  Soma, Akiko ^a   Kumagai, Ritsuko ^a   Nishikawa, Kazuya ^b   Himeno, Hyouta ^a  

^a HIROSAKI UNIVERSITY   (Japan)

^b GIFU UNIVERSITY   (Japan)

Author keywords

Saccharomyces cerevisiae; The anticodon arm; The long variable arm; tRNA identity; tRNA(Leu)

Indexed keywords

LEUCINE TRANSFER RNA LIGASE; TRANSFER RNA;

ANTICODON; ARTICLE; CONTROLLED STUDY; ENZYME KINETICS; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA STRUCTURE; SACCHAROMYCES CEREVISIAE;

ESCHERICHIA COLI; SACCHAROMYCES CEREVISIAE;

EID: 0030589119     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1996.0610     Document Type: Article

References (30)

1. Ser by seryl-tRNA synthetase in E. coli. Chem. Letters, 363-366.
2. Tyr. J. Mol. Biol. 231, 219-229.
3. Ser by its characteristic tertiary structure. J. Mol. Biol. 236, 738-748.
4. Ser into a leucine acceptor in vitro. Nucl. Acids Res. 23, 3633-3637.
5. Chirikjian, J. G., Kanagalingam, K., Lau, E. & Fresco, J. R. (1973). Purification and properties of leucyl-tRNA synthetase from Bakers' yeast. J. Biol. Chem. 248, 1074-1079.
6. Leu species from bean, yeast and Escherichia coli and interaction of these tRNAs with bean cytoplasmic leucyl-tRNA synthetase. A phosphate alkylation study with ethylnitrosourea. Nucl. Acids Res. 18, 2589-2597.
7. Giegé, R., Puglisi, J. D. & Florentz, C. (1993). tRNA structure and aminoacylation efficiency. Prog. Nucl. Acid Res. Mol. Biol. 45, 129-206.
8. His in aminoacylation. Nucl. Acids Res. 17, 7855-7863.
9. Ser in vitro. Nucl. Acids Res. 18, 6815-6819.
10. Hohmann, S. & Thevelein, J. M. (1992). The cell division cycle gene CDC60 encodes cytosolic leucyl-tRNA synthetase in Saccharomyces cerevisiae. Gene, 120, 43-49.
11. Hou, Y.-M. & Schimmel, P. (1989). Evidence that a major determinant for the identity of a transfer RNA is conserved in evolution. Biochemistry, 28, 6800-6804.
12. Messing, J. (1993). New M13 vectors for cloning. Methods Enzymol. 101, 20-78.
13. Milligan, J. F., Groebe, D. R., Witherell, G. W. & Uhlenbeck, O. C. (1987). Oligonucleotide synthesis using T7 polymerase and synthetic DNA templates. Nucl. Acids Res. 15, 8783-8798.
14. Phe by phenylalanyl-tRNA synthetase of Thermus thermophilus. Eur. J. Biochem. 234, 897-902.
15. Thr towards Saccharomyces cerevisiae threonyl-tRNA synthetase. Nucl. Acids Res. 23, 2831-2836.
16. Asp recognition mechanism differing from that of the yeast system. Biochem. Biophys. Res. Commun. 189, 856-862.
17. His. Nucl. Acids Res. 23, 389-394.
18. Nazarenko, I. A., Peterson, E. T., Zakharova, O. Z., Lavrik, O. I. & Uhlenbeck, O. C. (1992). Recognition nucleotides for human phenylalanyl-tRNA synthetase. Nucl. Acids Res. 20, 475-478.
19. Perret, V., Garcia, A., Grosjean, H., Ebel, J.-P., Florentz, C. & Giegé, R. (1990a). Relaxation of a transfer RNA specificity by removal of modified nucleotides. Nature, 344, 787-789.
20. Asp transcript deprived of modified nucleotides. Biochimie, 72, 735-744.
21. Leu from cow mammary gland with the cognate aminoacyl-tRNA synthetase by the chemical modification method. Bioorganicheskay Khimiy (Russ), 16, 1647-1652.
22. Pütz, J., Florentz, C., Benseler, F. & Giegé, R. (1994). A single methyl group prevents the mischarging of a tRNA. Nature Struct. Biol. 1, 580-582.
23. Sampson, J. R. & Uhlenbeck, O. C. (1988). Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro. Proc. Natl Acad. Sci. USA, 85, 1033-1037.
24. Schulman, L. H. (1991). Recognition of tRNAs by aminoacyl-tRNA synthetases. Prog. Nucl. Acid Res. Mol. Biol. 41, 23-87.
25. Shimizu, M., Asahara, H., Tamura, K., Hasegawa, T. & Himeno, H. (1992). The role of anticodon bases and the discriminator nucleotide in recognition of some E. coli tRNAs by their aminoacyl-tRN A synthetases. J. Mol. Evol. 35, 436-443.
26. Small, I., Maréchal-Drouard, L., Masson, J., Pelletier, G., Cosset, A., Weil, J.-H. & Dietrich, A. (1992). In vivo import of a normal or mutagenized heterologous transfer RNA into the mitochondria of transgenic plants: towards novel ways of influencing mitochondrial gene expression? EMBO J. 11, 1291-1296.
27. Sprinzl, M., Steegborn, C., Hübel, F. & Steinberg, S. (1996). Compilation of tRNA sequences and sequences of tRNA genes. Nucl. Acids Res. 24, 68-72.
28. Trézéguet, V., Edwards, H. & Schimmel, P. (1991). A single base-pair dominates over the novel identity of an Escherichia coli tyrosine tRNA in Saccharomyces cerevisiae. Mol. Cell. Biol. 11, 2744-2751.
29. Tsurui, H., Kumazawa, Y., Sanokawa, R., Watanabe, Y., Kuroda, T., Wada, A., Watanabe, K. & Shirai, T. (1994). Batchwise purification of specific tRNAs by a solid-phase DNA probe. Anal. Biochem. 221, 166-172.
30. Ser function as major identity elements for serylation in an orientation-dependent, but not sequence-specific manner. Nucl. Acids Res. 21, 5589-5594.