메뉴 건너뛰기




Volumn 26, Issue 2, 2004, Pages 132-141

What SNP Genotyping Errors Are Most Costly for Genetic Association Studies?

Author keywords

Chi square; Cost; Error detection; Genotype error; Linkage disequilibrium; Noncentrality parameter; Test of independence

Indexed keywords

ALLELE; ARTICLE; COST BENEFIT ANALYSIS; ERROR; GENE FREQUENCY; GENETIC ASSOCIATION; GENOTYPE; HETEROZYGOTE; HOMOZYGOTE; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 0942276432     PISSN: 07410395     EISSN: None     Source Type: Journal    
DOI: 10.1002/gepi.10301     Document Type: Article
Times cited : (72)

References (33)
  • 1
    • 0000937686 scopus 로고
    • Tests for linear trends in proportions and frequencies
    • Armitage P. 1955. Tests for linear trends in proportions and frequencies. Biometrics 11:375-386.
    • (1955) Biometrics , vol.11 , pp. 375-386
    • Armitage, P.1
  • 2
    • 84968340260 scopus 로고
    • Misclassification in 2 × 2 tables
    • Bross I. 1954. Misclassification in 2 × 2 tables. Biometrics 10:478-486.
    • (1954) Biometrics , vol.10 , pp. 478-486
    • Bross, I.1
  • 3
    • 0027514896 scopus 로고
    • Molecular and statistical approaches to the detection and correction of errors in genotype databases
    • Brzustowicz LM, Merette C, Xie X, Townsend L, Gilliam TC, Ott J. 1993. Molecular and statistical approaches to the detection and correction of errors in genotype databases. [erratum appears in Am J Hum Genet 1994;54:1132]. Am J Hum Genet 53:1137-1145.
    • (1993) Am J Hum Genet , vol.53 , pp. 1137-1145
    • Brzustowicz, L.M.1    Merette, C.2    Xie, X.3    Townsend, L.4    Gilliam, T.C.5    Ott, J.6
  • 4
    • 0028337502 scopus 로고
    • erratum appears
    • Brzustowicz LM, Merette C, Xie X, Townsend L, Gilliam TC, Ott J. 1993. Molecular and statistical approaches to the detection and correction of errors in genotype databases. [erratum appears in Am J Hum Genet 1994;54:1132]. Am J Hum Genet 53:1137-1145.
    • (1994) Am J Hum Genet , vol.54 , pp. 1132
  • 5
    • 84984932946 scopus 로고    scopus 로고
    • Population genetics - Making sense out of sequence
    • Chakravarti A. 1999. Population genetics - making sense out of sequence. Nat Genet 21:56-60.
    • (1999) Nat Genet , vol.21 , pp. 56-60
    • Chakravarti, A.1
  • 6
    • 0001400362 scopus 로고
    • The chi-square test of goodness of fit
    • Cochran WG. 1952. The chi-square test of goodness of fit. Ann Math Stat 23:315-345.
    • (1952) Ann Math Stat , vol.23 , pp. 315-345
    • Cochran, W.G.1
  • 8
    • 0033941023 scopus 로고    scopus 로고
    • A multipoint method for detecting genotyping errors and mutations in sibling-pair linkage data
    • Douglas JA, Boehnke M, Lange K. 2000. A multipoint method for detecting genotyping errors and mutations in sibling-pair linkage data. Am J Hum Genet 66:1287-1297.
    • (2000) Am J Hum Genet , vol.66 , pp. 1287-1297
    • Douglas, J.A.1    Boehnke, M.2    Lange, K.3
  • 9
    • 0036154960 scopus 로고    scopus 로고
    • Probability of detection of genotyping errors and mutations as inheritance inconsistencies in nuclear-family data
    • Douglas JA, Skol AD, Boehnke M. 2002. Probability of detection of genotyping errors and mutations as inheritance inconsistencies in nuclear-family data. Am J Hum Genet 70:487-495.
    • (2002) Am J Hum Genet , vol.70 , pp. 487-495
    • Douglas, J.A.1    Skol, A.D.2    Boehnke, M.3
  • 10
    • 0029655834 scopus 로고    scopus 로고
    • Error detection for genetic data, using likelihood methods
    • Ehm MG, Kimmel M, Cottingham RW Jr. 1996. Error detection for genetic data, using likelihood methods. Am J Hum Genet 58:225-234.
    • (1996) Am J Hum Genet , vol.58 , pp. 225-234
    • Ehm, M.G.1    Kimmel, M.2    Cottingham Jr., R.W.3
  • 12
    • 0035154452 scopus 로고    scopus 로고
    • Genetic analysis of case/control data using estimated haplotype frequencies: Application to APOE locus variation and Alzheimer's disease
    • Fallin D, Cohen A, Essioux L, Chumakov I, Blumenfeld M, Cohen D, Schork NJ. 2001. Genetic analysis of case/control data using estimated haplotype frequencies: application to APOE locus variation and Alzheimer's disease. Genome Res 11:143-151.
    • (2001) Genome Res , vol.11 , pp. 143-151
    • Fallin, D.1    Cohen, A.2    Essioux, L.3    Chumakov, I.4    Blumenfeld, M.5    Cohen, D.6    Schork, N.J.7
  • 13
    • 0032992242 scopus 로고    scopus 로고
    • True pedigree errors more frequent than apparent errors for single nucleotide polymorphisms
    • Gordon D, Heath SC, Ott J. 1999. True pedigree errors more frequent than apparent errors for single nucleotide polymorphisms. Hum Hered 49:65-70.
    • (1999) Hum Hered , vol.49 , pp. 65-70
    • Gordon, D.1    Heath, S.C.2    Ott, J.3
  • 14
    • 0033643184 scopus 로고    scopus 로고
    • An analytic solution to single nucleotide polymorphism error-detection rates in nuclear families: Implications for study design
    • Gordon D, Leal SM, Heath SC, Ott J. 2000. An analytic solution to single nucleotide polymorphism error-detection rates in nuclear families: implications for study design. In: Pac Symp Biocomput. p 663-674.
    • (2000) Pac Symp Biocomput , pp. 663-674
    • Gordon, D.1    Leal, S.M.2    Heath, S.C.3    Ott, J.4
  • 15
    • 0034917944 scopus 로고    scopus 로고
    • A transmission/disequilibrium test that allows for genotyping errors in the analysis of single-nucleotide polymorphism data
    • Gordon D, Heath SC, Liu X, Ott J. 2001. A transmission/disequilibrium test that allows for genotyping errors in the analysis of single-nucleotide polymorphism data. Am J Hum Genet 69:371-380.
    • (2001) Am J Hum Genet , vol.69 , pp. 371-380
    • Gordon, D.1    Heath, S.C.2    Liu, X.3    Ott, J.4
  • 16
    • 1842859051 scopus 로고    scopus 로고
    • Power and sample size calculations for case-control genetic association tests when errors are present: Application to single nucleotide polymorphisms
    • Gordon D, Finch SJ, Nothnagel M, Ott J. 2002. Power and sample size calculations for case-control genetic association tests when errors are present: application to single nucleotide polymorphisms. Hum Hered 54:22-33.
    • (2002) Hum Hered , vol.54 , pp. 22-33
    • Gordon, D.1    Finch, S.J.2    Nothnagel, M.3    Ott, J.4
  • 17
    • 0042629677 scopus 로고    scopus 로고
    • Errors and linkage disequilibrium interact multiplicatively when computing sample sizes for genetic case-control association studies
    • Gordon D, Levenstien MA, Finch SJ, Ott J. 2003. Errors and linkage disequilibrium interact multiplicatively when computing sample sizes for genetic case-control association studies. In: Pac Symp Biocomput. p 490-501.
    • (2003) Pac Symp Biocomput , pp. 490-501
    • Gordon, D.1    Levenstien, M.A.2    Finch, S.J.3    Ott, J.4
  • 18
    • 0036801154 scopus 로고    scopus 로고
    • The impact of genotyping error on haplotype reconstruction and frequency estimation
    • Kirk KM, Cardon LR. 2002. The impact of genotyping error on haplotype reconstruction and frequency estimation. Eur J Hum Genet 10:616-622.
    • (2002) Eur J Hum Genet , vol.10 , pp. 616-622
    • Kirk, K.M.1    Cardon, L.R.2
  • 19
    • 0023259678 scopus 로고
    • An algorithm for automatic genotype elimination
    • Lange K, Goradia TM. 1987. An algorithm for automatic genotype elimination. Am J Hum Genet 40:250-256.
    • (1987) Am J Hum Genet , vol.40 , pp. 250-256
    • Lange, K.1    Goradia, T.M.2
  • 20
    • 0021014321 scopus 로고
    • Evaluating pedigree data. II. Identifying the cause of error in families with inconsistencies
    • Lathrop GM, Huntsman JW, Hooper AB, Ward RH. 1983. Evaluating pedigree data. II. Identifying the cause of error in families with inconsistencies. Hum Hered 33:377-389.
    • (1983) Hum Hered , vol.33 , pp. 377-389
    • Lathrop, G.M.1    Huntsman, J.W.2    Hooper, A.B.3    Ward, R.H.4
  • 22
    • 0036160390 scopus 로고    scopus 로고
    • Assessing allelic dropout and genotype reliability using maximum likelihood
    • Miller CR, Joyce P, Waits LP. 2002. Assessing allelic dropout and genotype reliability using maximum likelihood. Genetics 160:357-366.
    • (2002) Genetics , vol.160 , pp. 357-366
    • Miller, C.R.1    Joyce, P.2    Waits, L.P.3
  • 23
    • 0001174368 scopus 로고
    • On the limiting power function of the frequency chi-square test
    • Mitra SK. 1958. On the limiting power function of the frequency chi-square test. Ann Math Stat 29:1221-1233.
    • (1958) Ann Math Stat , vol.29 , pp. 1221-1233
    • Mitra, S.K.1
  • 24
    • 0039245568 scopus 로고
    • An investigation of the effect of misclassification on the properties of chi square-tests in the analysis of categorical data
    • Mote VL, Anderson RL. 1965. An investigation of the effect of misclassification on the properties of chi square-tests in the analysis of categorical data. Biometrika 52:95-109.
    • (1965) Biometrika , vol.52 , pp. 95-109
    • Mote, V.L.1    Anderson, R.L.2
  • 25
    • 0032231941 scopus 로고    scopus 로고
    • PedCheck: A program for identification of genotype incompatibilities in linkage analysis
    • O'Connell JR, Weeks DE. 1998. PedCheck: a program for identification of genotype incompatibilities in linkage analysis. Am J Hum Genet 63:259-266.
    • (1998) Am J Hum Genet , vol.63 , pp. 259-266
    • O'Connell, J.R.1    Weeks, D.E.2
  • 26
    • 0141993292 scopus 로고    scopus 로고
    • Allowing for genotyping error in analysis of unmatched cases and controls
    • Rice KM, Holmans P. 2003. Allowing for genotyping error in analysis of unmatched cases and controls. Ann Hum Genet 67:165-174.
    • (2003) Ann Hum Genet , vol.67 , pp. 165-174
    • Rice, K.M.1    Holmans, P.2
  • 27
    • 0036299913 scopus 로고    scopus 로고
    • Web-based detection of genotype errors in pedigree data
    • Saito M, Saito A, Kamatani N. 2002. Web-based detection of genotype errors in pedigree data. J Hum Genet 47:377-379.
    • (2002) J Hum Genet , vol.47 , pp. 377-379
    • Saito, M.1    Saito, A.2    Kamatani, N.3
  • 28
    • 0031466983 scopus 로고    scopus 로고
    • From genotypes to genes: Doubling the sample size
    • Sasieni PD. 1997. From genotypes to genes: doubling the sample size. Biometrics 53:1253-1261.
    • (1997) Biometrics , vol.53 , pp. 1253-1261
    • Sasieni, P.D.1
  • 29
    • 0036157589 scopus 로고    scopus 로고
    • Detection and integration of genotyping errors in statistical genetics
    • Sobel E, Papp JC, Lange K. 2002. Detection and integration of genotyping errors in statistical genetics. Am J Hum Genet 70:496-508.
    • (2002) Am J Hum Genet , vol.70 , pp. 496-508
    • Sobel, E.1    Papp, J.C.2    Lange, K.3
  • 30
    • 0029846120 scopus 로고    scopus 로고
    • Identifying marker typing incompatibilities in linkage analysis
    • Stringham HM, Boehnke M. 1996. Identifying marker typing incompatibilities in linkage analysis. Am J Hum Genet 59:946-950.
    • (1996) Am J Hum Genet , vol.59 , pp. 946-950
    • Stringham, H.M.1    Boehnke, M.2
  • 33
    • 0042709545 scopus 로고    scopus 로고
    • Genotyping error detection through tightly linked markers
    • Zou G, Pan D, Zhao H. 2003. Genotyping error detection through tightly linked markers. Genetics 164:1161-1173.
    • (2003) Genetics , vol.164 , pp. 1161-1173
    • Zou, G.1    Pan, D.2    Zhao, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.