Mating type-dependent constraints on the mobility of the left arm of yeast chromosome III

Journal of Cell Biology

Volumn 164, Issue 3, 2004, Pages 361-371

  Bressan, Debra A ^a   Vazquez, Julio ^b,c   Haber, James E ^a  

^a BRANDEIS UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c Fred Hutchinson Cancer Research Center   (United States)

Author keywords

Chromosome dynamics; Deconvolution fluorescence microscopy; Donor preference; Mating type switching; Saccharomyces cerevisiae

Indexed keywords

ARTICLE; BINDING SITE; CELL MOTILITY; CHROMOSOMAL LOCALIZATION; CHROMOSOME 3; CHROMOSOME 5; DNA MICROARRAY; ENHANCER REGION; FUNGAL GENE; FUNGAL STRAIN; GENE SEQUENCE; GENE SWITCHING; GENETIC RECOMBINATION; HML GENE; LACO GENE; LACTOSE OPERON; MATA GENE; MATING; MATING TYPE GENE; NONHUMAN; OPERATOR GENE; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; TELOMERE; YEAST;

ALLELES; CHROMOSOMES, FUNGAL; GENE EXPRESSION REGULATION, FUNGAL; GENES, FUNGAL; GENES, MATING TYPE, FUNGAL; GREEN FLUORESCENT PROTEINS; HAPLOIDY; LUMINESCENT PROTEINS; RECOMBINANT FUSION PROTEINS; RECOMBINATION, GENETIC; SACCHAROMYCES CEREVISIAE; TELOMERE;

PROKARYOTA; SACCHAROMYCES CEREVISIAE; SACCHAROMYCETALES;

EID: 0842331349     PISSN: 00219525     EISSN: None     Source Type: Journal    
DOI: 10.1083/jcb.200311063     Document Type: Article

References (31)

1. Agard, D.A., Y. Hiraoka, P. Shaw, and J.W. Sedat. 1989. Fluorescence microscopy in three dimensions. Methods Cell Biol. 30:353-377.
2. Belmont, A.S. 2001. Visualizing chromosome dynamics with GFP. Trends Cell Biol 11:250-257.
3. Chen, H., D.D. Hughes, T.A. Chan, J.W. Sedat, and D.A. Agard. 1996. IVE (Image Visualization Environment): a software platform for all three-dimensional microscopy applications. J. Struct. Biol. 116:56-60.
4. Dekker, J., K. Rippe, M. Dekker, and N. Kleckner. 2002. Capturing chromosome conformation. Science. 295:1306-1311.
5. Fung, J.C., W.F. Marshall, A. Dernburg, D.A. Agard, and J.W. Sedat. 1998. Homologous chromosome pairing in Drosophila melanogaster proceeds through multiple independent initiations. J. Cell Biol. 141:5-20.
6. Gasser, S.M. 2001. Positions of potential: nuclear organization and gene expression. Cell. 104:639-642.
7. Goldstein, A.L., and J.H. McCusker. 1999. Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae. Yeast. 15:1541-1553.
8. Haber, J.E. 1998. Mating-type gene switching in Saccharomyces cerevisiae. Annu. Rev. Genet. 32:561-599.
9. He, X., D.R. Rines, C.W. Espelin, and P.K. Sorger. 2001. Molecular analysis of kinetochore-microtubule attachment in budding yeast. Cell 106:195-206.
10. Heun, P., T. Laroche, K. Shimada, P. Furrer, and S.M. Gasser. 2001. Chromosome dynamics in the yeast interphase nucleus. Science. 294:2181-2186.
11. Klar, A.J., J.B. Hicks, and J.N. Strathern. 1982. Directionality of yeast mating-type interconversion. Cell. 28:551-561.
12. Marshall, W.F. 2002. Order and disorder in the nucleus. Curr. Biol. 12:R185-R192.
13. Marshall, W.F., A. Straight, J.F. Marko, J. Swedlow, A. Dernburg, A. Belmont, A.W. Murray, D.A. Agard, and J.W. Sedat. 1997. Interphase chromosomes undergo constrained diffusional motion in living cells. Curr. Biol. 7:930-939.
14. Michaelis, C., R. Ciosk, and K. Nasmyth. 1997. Cohesins: chromosomal proteins that prevent premature separation of sister chromatids. Cell. 91:35-45.
15. Muhlemann, O., C.S. Mock-Casagrande, J. Wang, S. Li, N. Custodio, M. Carmo-Fonseca, M.F. Wilkinson, and M.J. Moore. 2001. Precursor RNAs harboring nonsense codons accumulate near the site of transcription. Mol. Cell. 8:33-43.
16. Rines, D.R., X. He, and P.K. Sorger. 2002. Quantitative microscopy of green fluorescent protein-labeled yeast. Methods Enzymol. 351:16-34.
17. Robinett, C.C., A. Straight, G. Li, C. Willhelm, G. Sudlow, A. Murray, and A.S. Belmont. 1996. In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition. J. Cell Biol. 135:1685-1700.
18. Simon, P., P. Houston, and J. Broach. 2002. Directional bias during mating type switching in Saccharomyces is independent of chromosomal architecture. EMBO J. 21:2282-2291.
19. Straight, A.F., A.S. Belmont, C.C. Robinett, and A.W. Murray. 1996. GFP tagging of budding yeast chromosomes reveals that protein-protein interactions can mediate sister chromatid cohesion. Curr. Biol. 6:1599-1608.
20. Strathern, J.N., and I. Herskowitz. 1979. Asymmetry and directionality in production of new cell types during clonal growth: the switching pattern of homothallic yeast. Cell. 17:371-381.
21. Sun, K., E. Coic, Z. Zhou, P. Durrens, and J.E. Haber. 2002. Saccharomyces forkhead protein Fkh1 regulates donor preference during mating-type switching through the recombination enhancer. Genes Dev. 16:2085-2096.
22. Szeto, L., and J.R. Broach. 1997. Role of alpha2 protein in donor locus selection during mating type interconversion. Mol. Cell. Biol. 17:751-759.
23. Szeto, L., M.K. Fafalios, H. Zhong, A.K. Vershon, and J.R. Broach. 1997. Alpha2p controls donor preference during mating type interconversion in yeast by inactivating a recombinational enhancer of chromosome III. Genes Dev. 11:1899-1911.
24. Tanaka, K., T. Oshima, H. Araki, S. Harashima, and Y. Oshima. 1984. Mating type control in Saccharomyces cerevisiae: a frameshift mutation at the common DNA sequence, X, of the HML alpha locus. Mol. Cell. Biol. 4:203-211.
25. Wach, A., A. Brachat, R. Pohlmann, and P. Philippsen. 1994. New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae. Yeast. 10:1793-1808.
26. Weiler, K.S., and J.R. Broach. 1992. Donor locus selection during Saccharomyces cerevisiae mating type interconversion responds to distant regulatory signals. Genetics. 132:929-942.
27. Weiss, K., and R.T. Simpson. 1997. Cell type-specific chromatin organization of the region that governs directionality of yeast mating type switching. EMBO J. 16:4352-4360.
28. Wu, C., K. Weiss, C. Yang, M.A. Harris, B.K. Tye, C.S. Newlon, R.T. Simpson, and J.E. Haber. 1998. Mcm1 regulates donor preference controlled by the recombination enhancer in Saccharomyces mating-type switching. Genes Dev. 12:1726-1737.
29. Wu, X., and J.E. Haber. 1995. MATa donor preference in yeast mating-type switching: activation of a large chromosomal region for recombination. Genes Dev. 9:1922-1932.
30. Wu, X., and J.E. Haber. 1996. A 700 bp cis-acting region controls mating-type dependent recombination along the entire left arm of yeast chromosome III. Cell. 87:277-285.
31. Wu, X., J.K. Moore, and J.E. Haber. 1996. Mechanism of MAT alpha donor preference during mating-type switching of Saccharomyces cerevisiae. Mol. Cell. Biol. 16:657-668.