Complete Genome Sequence of Fer-de-Lance Virus Reveals a Novel Gene in Reptilian Paramyxoviruses

Journal of Virology

Volumn 78, Issue 4, 2004, Pages 2045-2056

  Kurath, Gael ^a,c   Batts, William N ^a   Ahne, Winfried ^b   Winton, James R ^a  

^a WESTERN FISHERIES RESEARCH CENTER   (United States)

^b UNIVERSITY OF MUNICH   (Germany)

^c U S GEOLOGICAL SURVEY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACCESSORY V PROTEIN; GENE PRODUCT; MESSENGER RNA; UNCLASSIFIED DRUG; VIRUS I PROTEIN; VIRUS P PROTEIN; VIRUS RNA;

ANIMAL CELL; ARCHAEAL VIRUS; ARTICLE; CISTRON; FDLV U GENE; FER DE LANCE VIRUS; GENE EXPRESSION REGULATION; GENE SEQUENCE; GENOTYPE; NONHUMAN; NORTHERN BLOTTING; NUCLEIC ACID DATABASE; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; P GENE; PARAMYXOVIRUS; PRIORITY JOURNAL; PROTEIN EXPRESSION; REPTILE; RNA ANALYSIS; RNA EDITING; SEQUENCE HOMOLOGY; TRANSCRIPTION REGULATION; VIRUS GENE;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BOTHROPS; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; PARAMYXOVIRIDAE; PARAMYXOVIRIDAE INFECTIONS; PHYLOGENY; RNA EDITING; SEQUENCE ANALYSIS, DNA; VIRAL PROTEINS;

EID: 0842325992     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.78.4.2045-2056.2004     Document Type: Article

References (59)

1. Ahne, W. 1991. Viral infections of reptiles, p. 1-12. In 4th International Colloquium on Pathology and Medicine of Reptiles and Amphibians. German Veterinary Association, Giessen, Germany.
2. Ahne, W., W. N. Batts, G. Kurath, and J. R. Winton. 1999. Comparative sequence analyses of sixteen reptilian paramyxoviruses. Virus Res. 63:65-74.
3. Ahne, W., and W. J. Neubert. 1989. Antigenic relationship between three pleomorphic RNA viruses isolated from different snakes. Herpetopathologia 1:65-72.
4. Bowden, T. R., M. Westenberg, L. F. Wang, B. T. Eaton, and D. B. Boyle. 2001. Molecular characterization of Menangle virus, a novel paramyxovirus which infects pigs, fruit bats, and humans. Virology 283:358-373.
5. Calain, P., and L. Roux. 1993. The rule of six, a basic feature for efficient replication of Sendai virus defective interfering RNA. J. Virol. 67:4822-4830.
6. Cattaneo, R., K. Kaelin, K. Baczko, and M. A. Billeter. 1989. Measles virus editing provides an additional cysteine-rich protein. Cell 56:759-764.
7. Chant, K., R. Chan, M. Smith, D. E. Dwyer, and P. Kirkland. 1998. Probable human infection with a newly described virus in the family Paramyxoviridae. Emerg. Infect. Dis. 4:273-275.
8. Chua, K. B., W. J. Bellini, P. A. Rota, B. H. Harcourt, A. Tamin, S. K. Lam, T. G. Ksiazek, P. E. Rollin, S. R. Zaki, W.-J. Shieh, C. S. Goldsmith, D. J. Gubler, J. T. Roehrig, B. Eaton, A. R. Gould, J. Olson, H. Field, P. Daniels, A. E. Ling, C. J. Peters, L. J. Anderson, and B. W. J. Mahy. 2000. Nipah virus: a recently emergent deadly paramyxovirus. Science 288:1432-1435.
9. Chua, K. B., L. F. Wang, S. K. Lam, G. Crameri, M. Yu, T. Wise, D. Boyle, A. D. Hyatt, and B. T. Eaton. 2001. Tioman virus, a novel paramyxovirus isolated from fruit bats in Malaysia. Virology 283:215-229.
10. Clark, H. F., F. S. Lief, D. P. Lunger, D. Water, P. Leloup, D. Foelsch, and R. W. Wyler. 1979. Fer-de-Lance virus (FDLV): a probable paramyxovirus isolated from a reptile. J. Gen. Virol. 44:405-418.
11. Daszak, P., A. A. Cunningham, and A. D. Hyatt. 2000. Emerging infectious diseases of wildlife-threats to biodiversity and human health. Science 287:443-449.
12. de Leeuw, O., and B. Peeters. 1999. Complete nucleotide sequence of Newcastle disease virus: evidence for the existence of a new genus within the subfamily Paramyxoviridae. J. Gen. Virol. 80:131-136.
13. Emmenegger, E. J., R. M. Troyer, and G. Kurath. 2003. Characterization of the mutant spectra of a fish RNA virus within individual hosts during natural infections. Virus Res. 96:15-25.
14. Essbauer, S., and W. Ahne. 2001. Viruses of lower vertebrates. J. Vet. Med. B. 48:403-475.
15. Feldmann, H., and H.-D. Klenk. 1997. Marburg and Ebola viruses. Adv. Virus Res. 47:1-53.
16. Foelsch, D. W., and P. Leloup. 1976. Fatale endemische Infektion in einem Serpentarium. Tierarztl Prax. 4:527-536.
17. Franke, J., S. Essbauer, W. Ahne, and S. Blahak. 2001. Identification and molecular characterization of 18 paramyxoviruses isolated from snakes. Virus Res. 80:67-74.
18. Halpin, K., P. Young, and H. Field. 1996. Identification of likely natural hosts for equine morbillivirus. Comm. Dis. Intell. 20:476.
19. Harcourt, B. H., A. Tamin, T. G. Ksiazek, P. E. Rollin, L. J. Anderson, W. J. Bellini, and P. A. Rota. 2000. Molecular characterization of Nipah virus, a newly emergent paramyxovirus. Virology 271:334-349.
20. Harcourt, B. H., A. Tamin, K. Halpin, T. G. Ksiazek, P. E. Rollin, W. J. Bellini, and P. A. Rota. 2001. Molecular characterization of the polymerase gene and genomic termini of Nipah virus. Virology 287:192-201.
21. Hausmann, S., D. Garcin, C. Delenda, and D. Kolakofsky. 1999. The versatility of.paramyxovirus RNA polymerase stuttering. J. Virol. 73:5568-5576.
22. He, B., R. G. Paterson, N. Stock, J. E. Durbin, R. K. Durbin, S. Goodbourn, R. E. Randall, and R. A. Lamb. 2002. Recovery of paramyxovirus simian virus 5 with a V protein lacking the conserved cysteine-rich domain: the multifunctional V protein blocks both interferon-β induction and interferon signaling. Virology 303:15-32.
23. Hillis, D. M., and J. J. Bull. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42:182-192.
24. Hosaka, M., M. Nagahama, and W.-S. Kim. 1991. Arg-X-Lys/Arg-Arg motif as a signal for precursor cleavage catalyzed by furin within the constitutive secretory pathway. J. Biol. Chem. 266:12127-12130.
25. Huder, J. B., J. Boni, J.-M. Hatt, G. Soldati, H. Lutz, and J. Schupbach. 2002. Identification and characterization of two closely related unclassifiable endogenous retroviruses in pythons (Python molurus and Python curtus). J. Virol. 76:7607-7615.
26. Jackson, O. F., and J. R. Needham. 1983. Rhinitis and virus antibody titres in chelonians. J. Small Anim. Pract. 24:31-36.
27. Jacobson, E. R. 1986. Viruses and viral associated diseases of reptiles. Acta Zool. Pathol. Antiv. Maint. Reprod. Rept. Capt. 79:73-90.
28. Jacobson, E. R. 1993. Implications of infectious diseases for captive propagation and introduction programs of threatened/endangered reptiles. J. Zoo. Wild. Med. 24:245-255.
29. Jorgensen, E. D., P. L. Collins, and P. T. Lomedico. 1987. Cloning and nucleotide sequence of Newcastle disease virus hemagglutinin-neuraminidase mRNA: identification of a putative sialic acid binding site. Virology 156:12-24.
30. Junquiera de Azevedo, I. L., A. R. B. Prieto da Silva, E. Carmona, and P. L. Ho. 2001. Characterization of a paramyxovirus from a Fer de Lance viper (Bothrops jararaca): partial nucleotide sequence of the putative fusion protein. Arch. Virol. 146:51-57.
31. Kamer, G., and P. Argos. 1984. Primary structural comparison of RNA-dependent polymerases from plant, animal, and bacterial viruses. Nucleic Acids Res. 12:7269-7282.
32. Kennelly, P. J., and E. G. Krebs. 1991. Consensus sequences as substrate specificity determinants for protein kinases and protein phosphatases. J. Biol. Chem. 266:15555-15558.
33. Kindermann, J., A. Kubber-Heiss, P. Kerschbaumer, and N. Nowotny. 2001. Phylogenetic analysis of the L and HN gene of ophidian paramyxoviruses. Arch. Virol. 146:1021-1035.
34. Kolakofsky, D., T. Pelet, D. Garcin, S. Hausmann, J. Curran, and L. Roux. 1998. Paramyxovirus RNA synthesis and the requirement for hexamer genome length: the rule of six revisited. J. Virol. 72:891-899.
35. Kozak, M. 1991. Structural features in eukaryotic mRNAs that modulate the initiation of translation. J. Biol. Chem. 266:19867-19870.
36. Kretzschmar, E., R. Peluso, M. J. Schnell, M. A. Whitt, and J. K. Rose. 1996. Normal replication of vesicular stomatitis virus without C proteins. Virology 216:309-316.
37. Lamb, R. A., P. L. Collins, D. Kolakofsky, J. A. Melero, Y. Nagai, M. B. A. Oldstone, C. R. Pringle, and B. K. Rima. 2000. Family Paramyxoviridae, p. 549-561. In M. H. V. van Regenmortel, C. M. Fauquet, D. H. L. Bishop, E. B. Carstens, M. K. Estes, S. M. Lemon, J. Maniloff, M. A. Mayo, D. J. Mc-Geoch, C. R. Pringle, and R. B. Wickner (ed.), Virus taxonomy: classification and nomenclature of viruses. Seventh report of the International Committee for Taxonomy of Viruses. Academic Press, San Diego, Calif.
38. Lamb, R. A., and D. Kolakofsky. 2001. Paramyxoviridae: the viruses and their replication, p. 1305-1340. In D. M. Knipe and P. M. Howley (ed.), Fields virology, 4th ed. Lippincott Williams and Wilkins, Philadelphia, Pa.
39. Langedijk, J. P. M., F. J. Daus, and J. T. van Oirschot. 1997. Sequence and structure alignment of Paramyxoviridae attachment proteins and discovery of enzymatic activity for a morbillivirus hemagglutinin. J. Virol. 71:6155-6167.
40. Meyers, T. M., A. Pieters, and S. A. Moyer. 1997. A highly conserved region of the Sendai virus nucleocapsid protein contributes to the NP-NP binding domain. Virology 229:322-335.
41. Murray, K., P. Selleck, P. Hooper, A. Hyatt, A. Gould, L. Gleeson, H. Westbury, L. Hiley, L. Selvey, and B. Rodwell. 1995. A morbillivirus that caused fatal disease in horses and humans. Science 268:94-97.
42. Osterhaus, A. D., R. L. de Swart, H. W. Vos, P. S. Ross, M. J. Kenter, and T. Barrett. 1995. Morbillivirus infections of aquatic mammals: newly identified members of the genus. Vet. Microbiol. 44:219-227.
43. Paterson, R. G., and R. A. Lamb. 1990. RNA editing by G-nucleotide insertion in mumps virus P-gene mRNA transcripts. J. Virol. 64:4137-4145.
44. Patterson, J. B., D. Thomas, H. Lewicki, M. A. Billeter, and M. B. A. Oldstone. 2000. V and C proteins of measles virus function as virulence factors in vivo. Virology 267:80-89.
45. Philbey, A. W., P. D. Kirkland, A. D. Ross, R. J. Davis, A. B. Gleeson, R. J. Love, P. W. Daniels, A. R. Gould, and A. D. Hyatt. 1998. An apparently new virus (family Paramyxoviridae) infectious for pigs, humans, and fruit bats. Emerg. Infect. Dis. 4:269-271.
46. Poch, O., B. M. Blumberg, L. Bougueleret, and N. Tordo. 1990. Sequence comparison of five polymerases (L proteins) of unsegmented negative-strand RNA viruses: theoretical assignment of functional domains. J. Gen. Virol. 71:1153-1162.
47. Poole, E., B. He, R. A. Lamb, R. E. Randall, and S. Goodbourn. 2002. The V proteins of simian virus 5 and other paramyxoviruses inhibit induction of interferon-β. Virology 303:33-46.
48. Potgieter, L., R. Sigler, and R. Russell. 1987. Pneumonia in Ottoman vipers (Vipera xanthia xanthia) associated with parainfluenza 2-like virus. J. Wildl. Dis. 23:355-360.
49. Renshaw, R. W., A. L. Glaser, H. Van Campen, F. Weiland, and E. J. Dubovi. 2000. Identification and phylogenetic comparison of Salem virus, a novel paramyxovirus of horses. Virology 270:417-429.
50. Richter, G. A., B. L. Homer, S. A. Moyer, D. S. Williams, G. Scherba, S. J. Tucker, B. J. Hall, J. C. Pedersen, and E. R. Jacobson. 1996. Characterization of paramyxoviruses isolated from three snakes. Virus Res. 43:77-83.
51. Seal, B. S., D. J. King, and R. J. Meinersmann. 2000. Molecular evolution of the Newcastle disease virus matrix protein gene and phylogenetic relationships among the paramyxoviridae. Virus Res. 66:1-11.
52. Spiropoulou, C. F., and S. T. Nichol. 1993. A small highly basic protein is encoded in overlapping frame within the P gene of vesicular stomatitis virus. J. Virol. 67:3103-3110.
53. Swofford, D. L. 1998. PAUP* v 4: phylogenetic analysis using parsimony (*and other methods). Sinauer Associates, Sunderland, Mass.
54. Thomas, S. M., R. A. Lamb, and R. G. Paterson. 1988. Two mRNAs that differ by two nontemplated nucleotides encode the amino coterminal proteins P and V of the paramyxovirus SV5. Cell 54:891-902.
55. Tidona, C. A., H. W. Kurz, H. R. Gelderblom, and G. Darai. 1999. Isolation and molecular characterization of a novel cytopathic paramyxovirus from tree shrews. Virology 258:425-434.
56. Vidal, S., J. Curran, and D. Kolakofsky. 1990. Editing of the Sendai virus P/C mRNA by G insertion occurs during mRNA synthesis via a virus-encoded activity. J. Virol. 64:239-246.
57. Wang, L. F., and B. T. Eaton. 2002. Henipavirus (Paramyxoviridae), p. 641-644. In C. A Tidona and G. Darai (ed.), The Springer index of viruses. Springer-Verlag, Berlin, Germany.
58. Wang, L. F., W. P. Michalski, M. Yu, L. I. Pritchard, G. Crameri, B. Shiell, and B. T. Eaton. 1998. A novel P/V/C gene in a new member of the Paramyxoviridae family, which causes lethal infection in humans, horses, and other animals. J. Virol. 72:1482-1490.
59. Wang, L. F., M. Yu, E. Hansson, L. I. Pritchard, B. Shiell, W. P. Michalski, and B. T. Eaton. 2000. The exceptionally large genome of Hendra virus: support for creation of a new genus within the family Paramyxoviridae. J. Virol. 74:9972-9979.