Architecture and selectivity in aquaporins: 2.5 Å X-ray structure of aquaporin Z

PLoS Biology

Volumn 1, Issue 3, 2003, Pages

  Savage, David F ^a,b   Egea, Pascal F ^a   Robles Colmenares, Yaneth ^a   O'Connell III, Joseph D ^a   Stroud, Robert M ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AQUAPORIN; AQUAPORIN Z; GLYCEROL; MEMBRANE PROTEIN; POLYMER; RECOMBINANT PROTEIN; TETRAMER; UNCLASSIFIED DRUG; WATER; AQPZ PROTEIN, E COLI; CARBON; DETERGENT; ESCHERICHIA COLI PROTEIN; HYDROGEN; OXYGEN;

AMINO ACID SUBSTITUTION; ARTICLE; ATOM; BACTERIUM; CRYSTALLIZATION; ESCHERICHIA COLI; GENE; HYDROPHILICITY; HYDROPHOBICITY; INFORMATION PROCESSING; MOLECULAR MECHANICS; MOLECULE; MUTATION; OLIGOMERIZATION; POROSITY; PROTEIN DETERMINATION; PROTEIN EXPRESSION; PROTEIN FAMILY; PROTEIN FUNCTION; PROTEIN PURIFICATION; PROTEIN STRUCTURE; SPECIES; STEREOCHEMISTRY; X RAY ANALYSIS; AMINO ACID SEQUENCE; CELL MEMBRANE; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN SECONDARY STRUCTURE; SEQUENCE HOMOLOGY; X RAY CRYSTALLOGRAPHY;

ANIMALIA; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

AMINO ACID SEQUENCE; AQUAPORINS; CARBON; CELL MEMBRANE; CRYSTALLOGRAPHY, X-RAY; DETERGENTS; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GLYCEROL; HYDROGEN; MEMBRANE PROTEINS; MODELS, MOLECULAR; MOLECULAR CONFORMATION; MOLECULAR SEQUENCE DATA; OXYGEN; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; RECOMBINANT PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; WATER;

EID: 0842313156     PISSN: 15449173     EISSN: None     Source Type: Journal    
DOI: 10.1371/journal.pbio.0000072     Document Type: Article

References (35)

1. Abramson J, Smirnova I, Kasho V, Verner G, Kaback HR, et al. (2003) Structure and mechanism of the lactose permease of Escherichia coli. Science 301: 610-615. Find this article online
2. Bernal JD, Fowler RH (1933) A theory of water and ionic solution, with particular reference to hydrogen and hydroxyl ions. J Chem Phys 1: 515-548. Find this article online
3. Borgnia MJ, Agre P (2001) Reconstitution and functional comparison of purified GlpF and AqpZ, the glycerol and water channels from Escherichia coli. Proc Natl Acad Sci U S A 98: 2888-2893. Find this article online
4. Borgnia MJ, Kozono D, Calamita G, Maloney PC, Agre P (1999a) Functional reconstitution and characterization of AqpZ, the E. coli water channel protein. J Mol Biol 291: 1169-1179. Find this article online
5. Borgnia M, Nielsen S, Engel A, Agre P (1999b) Cellular and molecular biology of the aquaporin water channels. Annu Rev Biochem 68: 425-458. Find this article online
6. Brünger AT (1996) X-PLOR version 3.843. New Haven, Connecticut: Yale University.
7. Calamita G, Bishai WR, Preston GM, Guggino WB, Agre P (1995) Molecular cloning and characterization of AqpZ, a water channel from Escherichia coli. J Biol Chem 270: 29063-29066. Find this article online
8. Calamita G, Kempf B, Bonhivers M, Bishai WR, Bremer E, et al. (1998) Regulation of the Escherichia coli water channel gene aqpZ. Proc Natl Acad Sci U S A 95: 3627-3631. Find this article online
9. de Groot BL, Grubmüller H (2001) Water permeation across biological membranes: Mechanism and dynamics of aquaporin-1 and GlpF. Science 294: 2353-2357. Find this article online
10. de Grotthuss CJT (1806) Sur la décomposition de l'eau et des corps qu'elle tient en dissolution à l'aide de l'électricité galvanique. Ann Chim 58: 54-74. Find this article online
11. DeLano WL (2003) The PyMOL molecular graphics system. San Carlos, California: DeLano Scientific. Available at http://pymol.sourceforge.net/ via the Internet. Accessed October 25, 2003.
12. + conduction and selectivity. Science 280: 69-77. Find this article online
13. Dutzler R, Wang YF, Rizkallah P, Rosenbusch JP, Schirmer T (1996) Crystal structures of various maltooligosaccharides bound to maltoporin reveal a specific sugar translocation pathway. Structure 4: 127-134. Find this article online
14. Fu D, Libson A, Miercke LJ, Weitzman C, Nollert P, et al. (2000) Structure of a glycerol-conducting channel and the basis for its selectivity. Science 290: 481-486. Find this article online
15. Gerber PR, Müller K (1995) MAB: A generally applicable molecular force field for structural modeling in medicinal chemistry. J Comput Aided Mol Des 9: 251-268. Find this article online
16. Heller KB, Lin EC, Wilson TH (1980) Substrate specificity and transport properties of the glycerol facilitator of Escherichia coli. J Bacteriol 144: 274-278. Find this article online
17. Heymann JB, Engel A (2000) Structural clues in the sequences of the aquaporins. J Mol Biol 295: 1039-1053. Find this article online
18. Marti-Renom MA, Stuart AC, Fiser A, Sanchez R, Melo F, et al. (2000) Comparative protein structure modeling of genes and genomes. Annu Rev Biophys Biomol Struct 29: 291-325. Find this article online
19. Maurel C, Reizer J, Schroeder JI, Chrispeels MJ, Saier MH (1994) Functional characterization of the Escherichia coli glycerol facilitator, GlpF, in Xenopus oocytes. J Biol Chem 269: 11869-11872. Find this article online
20. Miroux B, Walker JE (1996) Over-production of proteins in Escherichia coli: Mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels. J Mol Biol 260: 289-298. Find this article online
21. Murata K, Mitsuoka K, Hirai T, Walz T, Agre P, et al. (2000) Structural determinants of water permeation through aquaporin-1. Nature 407: 599-605. Find this article online
22. Neidhardt FC, Curtiss R, Lin EC editors (1996) Escherichia coli and Salmonella. 2nd edition. Washington, DC: American Society for Microbiology Press. 3,008 p.
23. Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276: 307-326. Find this article online
24. Park JH, Saier MH (1996) Phylogenetic characterization of the MIP family of transmembrane channel proteins. J Membr Biol 153: 171-180. Find this article online
25. Preston GM, Carroll TP, Guggino WB, Agre P (1992) Appearance of water channels in Xenopus oocytes expressing red cell CHIP28 protein. Science 256: 385-387. Find this article online
26. Ringler P, Borgnia MJ, Stahlberg H, Maloney PC, Agre P, et al. (1999) Structure of the water channel AqpZ from Escherichia coli revealed by electron crystallography. J Mol Biol 291: 1181-1190. Find this article online
27. Scheiner S, Kar T, Gu Y (2001) Strength of the Cα-H O hydrogen bond of amino acid residues. J Biol Chem 276: 9832-9837. Find this article online
28. Senes A, Gerstein M, Engelman DM (2000) Statistical analysis of amino acid patterns in transmembrane helices: The GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions. J Mol Biol 296: 921-936. Find this article online
29. Senes A, Ubarretxena-Belandia I, Engelman DM (2001) The Cα-H O hydrogen bond: A determinant of stability and specificity in transmembrane helix interactions. Proc Natl Acad Sci U S A 98: 9056-9061. Find this article online
30. Sui H, Han BG, Lee JK, Walian P, Jap BK (2001) Structural basis of water-specific transport through the AQP1 water channel. Nature 414: 872-878. Find this article online
31. Tajkhorshid E, Nollert P, Jensen MO, Miercke LJ, O'Connell J, et al. (2002) Control of the selectivity of the aquaporin water channel family by global orientational tuning. Science 296: 525-530. Find this article online
32. + channel. Biochemistry 41: 10771-10777. Find this article online
33. Van Gelder P, Dumas F, Bartoldus I, Saint N, Prilipov A, et al. (2002) Sugar transport through maltoporin of Escherichia coli: Role of the greasy slide. J Bacteriol 184: 2994-2999. Find this article online
34. Wahl MC, Sundaralingam M (1997) C-HO hydrogen bonding in biology. Trends Biochem Sci 22: 97-102. Find this article online
35. Walz T, Hirai T, Murata K, Heymann JB, Mitsuoka K, et al. (1997) The three-dimensional structure of aquaporin-1. Nature 387: 624-627. Find this article online