A complete set of SNAREs in yeast

Traffic

Volumn 5, Issue 1, 2004, Pages 45-52

  Burri, Lena ^a   Lithgow, Trevor ^a  

^a UNIVERSITY OF MELBOURNE   (Australia)

Author keywords

Anchored proteins; Genomics; Membrane fusion; SNARE; Tail

Indexed keywords

ENVELOPE PROTEIN; MEMBRANE PROTEIN; MITOCHONDRIAL PROTEIN; SACCHAROMYCES CEREVISIAE PROTEIN; SNARE PROTEIN;

AMINO TERMINAL SEQUENCE; CELL ORGANELLE; CELL VACUOLE; CONTROLLED STUDY; CYTOSOL; ENDOPLASMIC RETICULUM; GENOME ANALYSIS; GOLGI COMPLEX; MEMBRANE FUSION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN LOCALIZATION; PROTEIN STRUCTURE; PROTEIN TARGETING; REVIEW; SACCHAROMYCES CEREVISIAE; YEAST CELL;

CELL MEMBRANE; ENDOPLASMIC RETICULUM; GENOME, FUNGAL; GOLGI APPARATUS; MEMBRANE FUSION; PROTEIN STRUCTURE, TERTIARY; PROTEIN TRANSPORT; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SNARE PROTEINS; TRANSPORT VESICLES; VESICULAR TRANSPORT PROTEINS;

EID: 0742272120     PISSN: 13989219     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1600-0854.2003.00151.x     Document Type: Review

References (70)

1. Rothman JE. Mechanisms of intracellular protein transport. Nature 1994;372:55-63.
2. Pelham HR. SNAREs and the secretory pathway-lessons from yeast. Exp Cell Res 1999;247:1-8.
3. Chen YA, Scheller RH. SNARE-mediated membrane fusion. Nat Rev Mol Cell Biol 2001;2:98-106.
4. Jahn R, Lang T, Südhof TC. Membrane fusion. Cell 2003;112:519-533.
5. Weber T, Zemelman BV, McNew JA, Westermann B, Gmachl M, Parlati F, Söllner TH, Rothman JE. SNAREpins: minimal machinery for membrane fusion. Cell 1998;92:759-772.
6. Fasshauer D, Sutton RB, Brunger AT, Jahn R. Conserved structural features of the synaptic fusion complex: SNARE proteins reclassified as Q- and R-SNAREs. Proc Natl Acad Sci USA 1998;95:15781-15786.
7. Bock JB, Matern HT, Peden AA, Scheller RH. A genomic perspective on membrane compartment organization. Nature 2001;409:839-841.
8. Block MR, Glick BS, Wilcox CA, Wieland FT, Rothman JE. Purification of an N-ethylmaleimide-sensitive protein catalyzing vesicular transport. Proc Natl Acad Sci USA 1988;85:7852-7856.
9. Söllner T, Whiteheart SW, Brunner M, Erdjument-Bromage H, Geromanos S, Tempst P, Rothman JE. SNAP receptors implicated in vesicle targeting and fusion. Nature 1993;362:318-324.
10. Trimble WS, Cowan DM, Schaller RH. VAMP-1: a synaptic vesicle-associated integral membrane protein. Proc Natl Acad Sci USA 1988;85:4538-4542.
11. Oyler GA, Higgins GA, Hart RA, Battenberg E, Billingsley M, Bloom FE, Wilson MC. The identification of a novel synaptosomal-associated protein, SNAP-25, differentially expressed by neuronal subpopulations. J Cell Biol 1989;109:3039-3052.
12. Bennett MK, Calakos N, Scheller RH. Syntaxin: a synaptic protein implicated in docking of synaptic vesicles at presynaptic active zones. Science 1992;257:255-259.
13. Novick P, Ferro S, Schekman R. Order of events in the yeast secretory pathway. Cell 1981;25:461-469.
14. Kaiser CA, Schekman R. Distinct sets of SEC genes govern transport vesicle formation and fusion early in the secretory pathway. Cell 1990;61:723-733.
15. Brennwald P, Kearns B, Champion K, Keranen S, Bankaitis V, Novick P. Sec9 is a SNAP-25-like component of a yeast SNARE complex that may be the effector of Sec4 function in exocytosis. Cell 1994;79: 245-258.
16. Gupta GD, Brent Heath I. Predicting the distribution, conservation, and functions of SNAREs and related proteins in fungi. Fungal Genet Biol 2002;36:1-21.
17. Dacks JB, Doolittle WF. Novel syntaxin gene sequences from Giardia, Trypanosoma and algae: implications for the ancient evolution of the eukaryotic endomembrane system. J Cell Sci 2002;115:1635-1642.
18. Teng FY, Wang Y, Tang BL. The syntaxins. Genome Biol 2001;2: Reviews 3012.
19. Lewis MJ, Pelham HR. SNARE-mediated retrograde traffic from the Golgi complex to the endoplasmic reticulum. Cell 1996;85:205-215.
20. Lupashin VV, Pokrovskaya ID, McNew JA, Waters MG. Characterization of a novel yeast SNARE protein implicated in Golgi retrograde traffic. Mol Biol Cell 1997;8:2659-2676.
21. Weimbs T, Low SH, Chapin SJ, Mostov KE, Bucher P, Hofmann K. A conserved domain is present in different families of vesicular fusion proteins: a new superfamily. Proc Natl Acad Sci USA 1997;94: 3046-3051.
22. Holthuis JC, Nichols BJ, Dhruvakumar S, Pelham HR. Two syntaxin homologues in the TGN/endosomal system of yeast. EMBO J 1998;17:13-26.
23. Lewis MJ, Pelham HR. A new yeast endosomal SNARE related to mammalian syntaxin 8. Traffic 2002;3:922-929.
24. Weimbs T, Mostov K, Low SH, Hofmann K. A model for structural similarity between different SNARE complexes based on sequence relationships. Trends Cell Biol 1998;8:260-262.
25. Burri L, Varlamov O, Doege CA, Hofmann K, Beilharz T, Rothman JE, Söllner TH, Lithgow T. A SNARE required for retrograde transport to the endoplasmic reticulum. Proc Natl Acad Sci USA 2003;100: 9873-9877.
26. Dilcher M, Veith B, Chidambaram S, Hartmann E, Schmitt HD, Fischer von Mollard G. Use1p is a yeast SNARE protein required for retrograde traffic to the ER. EMBO J 2003;22:3664-3674.
27. Belgareh-Touze N, Corral-Debrinski M, Launhardt H, Galan JM, Munder T, Le Panse S, Haguenauer-Tsapis R. Yeast functional analysis identification of two essential genes involved in ER to Golgi trafficking. Traffic 2003;4:607-617.
28. Beilharz T, Egan B, Silver PA, Hofmann K, Lithgow T. Bipartite signals mediate subcellular targeting of tail-anchored membrane proteins in Saccharomyces cerevisiae. J Biol Chem 2003;278:8219-8223.
29. Wattenberg B, Lithgow T. Targeting of C-terminal (tail) -anchored proteins: understanding how cytoplasmic activities are anchored to intracellular membranes. Traffic 2001;2:66-71.
30. Kutay U, Ahnert-Hilger G, Hartmann E, Wiedenmann B, Rapoport TA. Transport route for synaptobrevin via a novel pathway of insertion into the endoplasmic reticulum membrane. EMBO J 1995;14:217-223.
31. Kim PK, Hollerbach C, Trimble WS, Leber B, Andrews DW. Identification of the endoplasmic reticulum targeting signal in vesicle-associated membrane proteins. J Biol Chem 1999;274:36876-36882.
32. Steel GJ, Brownsword J, Stirling CJ. Tail-anchored protein insertion into yeast ER requires a novel posttranslational mechanism which is independent of the SEC machinery. Biochemistry 2002;41: 11914-11920.
33. Grote E, Baba M, Ohsumi Y, Novick PJ. Geranylgeranylated SNAREs are dominant inhibitors of membrane fusion. J Cell Biol 2000;51: 453-466.
34. McNew JA, Parlati F, Fukuda R, Johnston RJ, Paz K, Paumet F, Söllner TH, Rothman JE. Compartmental specificity of cellular membrane fusion encoded in SNARE proteins. Nature 2000;407:153-159.
35. McNew JA, Weber T, Engelman DM, Söllner TH, Rothman JE. The length of the flexible SNAREpin juxtamembrane region is a critical determinant of SNARE-dependent fusion. Mol Cell 1999;4:415-421.
36. Langosch D, Crane JM, Brosig B, Hellwig A, Tamm LK, Reed J. Peptide mimics of SNARE transmembrane segments drive membrane fusion depending on their conformational plasticity. J Mol Biol 2001;311: 709-721.
37. Munro S. An investigation of the role of transmembrane domains in Golgi protein retention. EMBO J 1995;14:4695-4704.
38. Rayner JC, Pelham HR. Transmembrane domain-dependent sorting of proteins to the ER and plasma membrane in yeast. EMBO J 1997;16:1832-1841.
39. Watson RT, Pessin JE. Transmembrane domain length determines intracellular membrane compartment localization of syntaxins 3, 4 and 5. Am J Physiol Cell Physiol 2001;281:C215-C223.
40. Springer S, Schekman R. Nucleation of COPII vesicular coat complex by endoplasmic reticulum to Golgi vesicle SNAREs. Science 1998;281:698-700.
41. Rein U, Andag U, Duden R, Schmitt HD, Spang A. ARF-GAP-mediated interaction between the ER-Golgi v-SNAREs and the COPI coat. J Cell Biol 2002;157:395-404.
42. Matsuoka K, Morimitsu Y, Uchida K, Schekman R. Coat assembly directs v-SNARE concentration into synthetic COPII vesicles. Mol Cell 1998;2:703-708.
43. Joglekar AP, Xu D, Rigotti DJ, Fairman R, Hay JC. The SNARE motif contributes to rbet1 intracellular targeting and dynamics independently of SNARE interactions. J Biol Chem 2003;278:14121-14133.
44. Grote E, Hao JC, Bennett MK, Kelly RB. A targeting signal in VAMP regulating transport to synaptic vesicles. Cell 1995;81:581-589.
45. Black MW, Pelham HR. A selective transport route from Golgi to late endosomes that requires the yeast GGA proteins. J Cell Biol 2000;151:587-600.
46. Barlowe C. Molecular recognition of cargo by the COPII complex: a most accommodating coat. Cell 2003;112:395-399.
47. Hasegawa H, Zinsser S, Rhee Y, Vik-Mo EO, Davanger S, Hay JC. Mammalian Ykt6 is a neuronal SNARE targeted to a specialized compartment by its profilin-like amino terminal domain. Mol Biol Cell 2003;14:698-720.
48. Cheever ML, Sato TK, de Beer T, Kutateladze TG, Emr SD, Overduin M. Phox domain interaction with Ptdlns(3)P targets the Vam7 t-SNARE to vacuole membranes. Nat Cell Biol 2001;3:613-618.
49. Gonzalo S, Greentree WK, Linder ME. SNAP-25 is targeted to the plasma membrane through a novel membrane-binding domain. J Biol Chem 1999;274:21313-21318.
50. Loranger SS, Linder ME. SNAP-25 traffics to the plasma membrane by a syntaxin-independent mechanism. J Biol Chem 2002;277:34303-34309.
51. Cao X, Barlowe C. Asymmetric requirements for a Rab GTPase and SNARE proteins in fusion of COPII vesicles with acceptor membranes. J Cell Biol 2000;149:55-56.
52. Wickner W. Yeast vacuoles and membrane fusion pathways. EMBO J 2002;21:1241-1247.
53. Toonen RF, Verhage M. Vesicle trafficking, pleasure and pain from SM genes. Trends Cell Biol 2003;13:177-186.
54. Yamaguchi T, Dulubova I, Min SW, Chen X, Rizo J, Südhof TC. Sly1 binds to Golgi and ER syntaxins via a conserved N-terminal peptide motif. Dev Cell 2002;2:295-305.
55. Bryant NJ, James DE. Vps45p stabilizes the syntaxin homologue Tlg2p and positively regulates SNARE complex formation. EMBO J 2001;20:3380-3388.
56. Dulubova I, Yamaguchi T, Gao Y, Min SW, Huryeva I., Rizo J. How Tlg2p/syntaxin 16 'snares' Vps45. EMBO J 2002;21:3620-3631.
57. Antonin W, Fasshauer D, Becker S, Jahn R, Schneider TR. Crystal structure of the endosomal SNARE complex reveals common structural principles of all SNAREs. Nat Struct Biol 2002;9:107-111.
58. Gonzalez LC, Weis WI, Scheller RH. A novel snare N-terminal domain revealed by the crystal structure of Sec22b. J Biol Chem 2001;276: 24203-24211.
59. Bracher A, Weissenhorn W. Structural basis for the Golgi membrane recruitment of Sly1p by Sed5p. EMBO J 2002;21:6114-6124.
60. Tochio H, Tsui MM, Banfield DK, Zhang M. An autoinhibitory mechanism for nonsyntaxin SNARE proteins revealed by the structure of Ykt6p. Science 2001;293:698-702.
61. Misura KM, Bock JB, Gonzalez LC, Scheller RH, Weis WI. Three-dimensional structure of the amino-terminal domain of syntaxin 6, a SNAP-25 C homolog. Proc Natl Acad Sci USA 2002;99:9184-9189.
62. Neiman AM, Katz L, Brennwald PJ. Identification of domains required for developmentally regulated SNARE function in Saccharomyces cerevisiae. Genetics 2000;155:1643-1655.
63. Huttner IG, Strahl T, Osawa M, King DS, Ames JB, Thorner J. Molecular interactions of yeast frequenin (Frq1) with the phosphatidylinositol 4-kinase isoform, Pik1. J Biol Chem 2003;278: 4862-4874.
64. Sweet DJ, Pelham HR. The TIP1 gene of Saccharomyces cerevisiae encodes an 80 kDa cytoplasmic protein that interacts with the cytoplasmic domain of Sec20p. EMBO J 1993;12: 2831-2840.
65. Peters C, Andrews PD, Stark MJ, Cesaro-Tadic S, Glatz A, Podtelejnikov A, Mann M, Mayer A. Control of the terminal step of intracellular membrane fusion by protein phosphatase 1. Science 1999;285:1084-1087.
66. Wang L, Seeley ES, Wickner W, Merz AJ. Vacuole fusion at a ring of vertex docking sites leaves membrane fragments within the organelle. Cell 2002;108:357-369.
67. Dulubova I, Yamaguchi T, Wang Y, Sudhof TC, Rizo J. Vam3p structure reveals conserved and divergent properties of syntaxins. Nat Struct Biol 2001;8:186-188.
68. Nicholson KL, Munson M, Miller RB, Filip TJ, Fairman R, Hughson FM. Regulation of SNARE complex assembly by an N-terminal domain of the t-SNARE Sso1p. Nat Struct Biol 1998;5:793-802.
69. Carr CM, Grote E, Munson M, Hughson FM, Novick PJ. Sec1p binds to SNARE complexes and concentrates at sites of secretion. J Cell Biol 1999;146:333-344.
70. Antonin W, Dulubova I, Arac D, Pabst S, Plitzner J, Rizo J, Jahn R. The N-terminal domains of syntaxin 7 and vti1b form three-helix bundles that differ in their ability to regulate SNARE complex assembly. J Biol Chem 2002;277:36449-36456.