-
1
-
-
0035812694
-
Protein structure prediction and structural genomics
-
Baker D and Sali A: Protein structure prediction and structural genomics. Science 2001, 294:93-96.
-
(2001)
Science
, vol.294
, pp. 93-96
-
-
Baker, D.1
Sali, A.2
-
2
-
-
0036533931
-
Identifying functional links between genes using conserved chromosomal proximity
-
Yanai I, Mellor JC and DeLisi C: Identifying functional links between genes using conserved chromosomal proximity. Trends Genet 2002, 18:176-179.
-
(2002)
Trends Genet.
, vol.18
, pp. 176-179
-
-
Yanai, I.1
Mellor, J.C.2
DeLisi, C.3
-
3
-
-
0036081482
-
Predictome: A database of putative functional links between proteins
-
Mellor JC, Yanai I, Clodfelter KH, Mintseris J and DeLisi C: Predictome: a database of putative functional links between proteins. Nucleic Acids Res 2002, 30:306-309.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 306-309
-
-
Mellor, J.C.1
Yanai, I.2
Clodfelter, K.H.3
Mintseris, J.4
DeLisi, C.5
-
4
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W and Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
5
-
-
0011542799
-
The Pfam protein families database
-
Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M and Sonnhammer EL: The Pfam protein families database. Nucleic Acids Res 2002, 30:276-280.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 276-280
-
-
Bateman, A.1
Birney, E.2
Cerruti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
Griffiths-Jones, S.7
Howe, K.L.8
Marshall, M.9
Sonnhammer, E.L.10
-
6
-
-
0035865948
-
Protein structural domains: Analysis of the 3Dee domains database
-
Dengler U, Siddiqui AS and Barton GJ: Protein structural domains: analysis of the 3Dee domains database. Proteins 2001, 42:332-344.
-
(2001)
Proteins
, vol.42
, pp. 332-344
-
-
Dengler, U.1
Siddiqui, A.S.2
Barton, G.J.3
-
7
-
-
0031841279
-
The HSSP database of protein structure-sequence alignments and family profiles
-
Dodge C, Schneider R and Sander C: The HSSP database of protein structure-sequence alignments and family profiles. Nucleic Acids Res 1998, 26:313-315.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 313-315
-
-
Dodge, C.1
Schneider, R.2
Sander, C.3
-
8
-
-
0034924493
-
SWISS-PROT: Connecting biomolecular knowledge via a protein database
-
Gasteiger E, Jung E and Bairoch A: SWISS-PROT: connecting biomolecular knowledge via a protein database. Curr Issues Mol Biol 2001, 3:47-55.
-
(2001)
Curr. Issues Mol. Biol.
, vol.3
, pp. 47-55
-
-
Gasteiger, E.1
Jung, E.2
Bairoch, A.3
-
9
-
-
0030765455
-
Dali/FSSP classification of three-dimensional protein folds
-
Holm L and Sander C: Dali/FSSP classification of three-dimensional protein folds. Nucleic Acids Res 1997, 25:231-234.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 231-234
-
-
Holm, L.1
Sander, C.2
-
10
-
-
0028871926
-
Dali: A network tool for protein structure comparison
-
Holm L and Sander C: Dali: a network tool for protein structure comparison. Trends Biochem Sci 1995, 20:478-480.
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 478-480
-
-
Holm, L.1
Sander, C.2
-
11
-
-
0033756225
-
MJ0109 is an enzyme that is both an inositol monophosphatase and the 'missing' archaeal fructose-1,6-bisphosphatase
-
Stec B, Yang H, Johnson KA, Chen L and Roberts MF: MJ0109 is an enzyme that is both an inositol monophosphatase and the 'missing' archaeal fructose-1,6-bisphosphatase. Nat Struct Biol 2000, 7:1046-1050.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 1046-1050
-
-
Stec, B.1
Yang, H.2
Johnson, K.A.3
Chen, L.4
Roberts, M.F.5
-
12
-
-
0036084625
-
SCOP database in 2002: Refinements accommodate structural genomics
-
Lo Conte L, Brenner SE, Hubbard TJ, Chothia C and Murzin AG: SCOP database in 2002: refinements accommodate structural genomics. Nucleic Acids Res 2002, 30:264-267.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 264-267
-
-
Lo Conte, L.1
Brenner, S.E.2
Hubbard, T.J.3
Chothia, C.4
Murzin, A.G.5
-
13
-
-
0035367880
-
Determination of protein function, evolution and interactions by structural genomics
-
Teichmann SA, Murzin AG and Chothia C: Determination of protein function, evolution and interactions by structural genomics. Curr Opin Struct Biol 2001, 11:354-363.
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 354-363
-
-
Teichmann, S.A.1
Murzin, A.G.2
Chothia, C.3
-
14
-
-
0031897589
-
Predicting functions from protein sequences - Where are the bottlenecks?
-
Bork P and Koonin EV: Predicting functions from protein sequences--where are the bottlenecks? Nat Genet 1998,18:313-318.
-
(1998)
Nat. Genet.
, vol.18
, pp. 313-318
-
-
Bork, P.1
Koonin, E.V.2
-
15
-
-
0033597176
-
The relationship between protein structure and function: A comprehensive survey with application to the yeast genome
-
Hegyi H and Gerstein M: The relationship between protein structure and function: a comprehensive survey with application to the yeast genome. J Mol Biol 1999, 288:147-164.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 147-164
-
-
Hegyi, H.1
Gerstein, M.2
-
16
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin AG, Brenner SE, Hubbard T and Chothia C: SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 1995, 247:536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
17
-
-
0037177237
-
Homologous (beta/alpha)8-barrel enzymes that catalyze unrelated reactions: Orotidine 5′-monophosphate decarboxylase and 3-keto-L-gulonate 6-phosphate decarboxylase
-
Wise E, Yew WS, Babbitt PC, Gerlt JA and Rayment I: Homologous (beta/alpha)8-barrel enzymes that catalyze unrelated reactions: orotidine 5′-monophosphate decarboxylase and 3-keto-L-gulonate 6-phosphate decarboxylase. Biochemistry 2002,41:3861-3869.
-
(2002)
Biochemistry
, vol.41
, pp. 3861-3869
-
-
Wise, E.1
Yew, W.S.2
Babbitt, P.C.3
Gerlt, J.A.4
Rayment, I.5
-
18
-
-
0036384350
-
One fold with many functions: The evolutionary relationships between TIM barrel families based on their sequences, structures and functions
-
Nagano N, Orengo CA and Thornton JM: One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions. J Mol Biol 2002, 321:741-765.
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 741-765
-
-
Nagano, N.1
Orengo, C.A.2
Thornton, J.M.3
-
19
-
-
0034730195
-
Directed evolution of a (beta alpha)8-barrel enzyme to catalyze related reactions in two different metabolic pathways
-
Jurgens C, Strom A, Wegener D, Hettwer S, Wilmanns M and Sterner R: Directed evolution of a (beta alpha)8-barrel enzyme to catalyze related reactions in two different metabolic pathways. Proc Natl Acad Sci U S A 2000, 97:9925-9930.
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 9925-9930
-
-
Jurgens, C.1
Strom, A.2
Wegener, D.3
Hettwer, S.4
Wilmanns, M.5
Sterner, R.6
-
20
-
-
0026500416
-
The structure of the E. coli recA protein monomer and polymer
-
Story RM, Weber IT and Steitz TA: The structure of the E. coli recA protein monomer and polymer. Nature 1992, 355:318-325.
-
(1992)
Nature
, vol.355
, pp. 318-325
-
-
Story, R.M.1
Weber, I.T.2
Steitz, T.A.3
-
21
-
-
0026079373
-
The refined structure of the complex between adenylate kinase from beef heart mitochondrial matrix and its substrate AMP at 1.85 A resolution
-
Diederichs K and Schulz GE: The refined structure of the complex between adenylate kinase from beef heart mitochondrial matrix and its substrate AMP at 1.85 A resolution. J Mol Biol 1991, 217:541-549.
-
(1991)
J. Mol. Biol.
, vol.217
, pp. 541-549
-
-
Diederichs, K.1
Schulz, G.E.2
-
22
-
-
0034628501
-
Directed evolution of new catalytic activity using the alpha/beta-barrel scaffold
-
Altamirano MM, Blackburn JM, Aguayo C and Fersht AR: Directed evolution of new catalytic activity using the alpha/beta-barrel scaffold. Nature 2000, 403:617-622.
-
(2000)
Nature
, vol.403
, pp. 617-622
-
-
Altamirano, M.M.1
Blackburn, J.M.2
Aguayo, C.3
Fersht, A.R.4
-
23
-
-
0031865006
-
Touring protein fold space with Dali/FSSP
-
Holm L and Sander C: Touring protein fold space with Dali/FSSP. Nucleic Acids Res 1998, 26:316-319.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 316-319
-
-
Holm, L.1
Sander, C.2
-
24
-
-
0033574503
-
Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches
-
Aravind L and Koonin EV: Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches. J Mol Biol 1999, 287:1023-1040.
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 1023-1040
-
-
Aravind, L.1
Koonin, E.V.2
-
25
-
-
0023045688
-
Nucleic acid secondary structure prediction and display
-
Stuber K: Nucleic acid secondary structure prediction and display. Nucleic Acids Res 1986, 14:317-326.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 317-326
-
-
Stuber, K.1
-
27
-
-
0024599570
-
Polyamines and regulation of ornithine biosynthesis in Escherichia coli
-
Cataldi AA and Algranati ID: Polyamines and regulation of ornithine biosynthesis in Escherichia coli. J Bacteriol 1989,171:1998-2002.
-
(1989)
J. Bacteriol.
, vol.171
, pp. 1998-2002
-
-
Cataldi, A.A.1
Algranati, I.D.2
-
28
-
-
0033135202
-
Structure of mammalian ornithine decarboxylase at 1.6 A resolution: Stereochemical implications of PLP-dependent amino acid decarboxylases
-
Kern AD, Oliveira MA, Coffino P and Hackert ML: Structure of mammalian ornithine decarboxylase at 1.6 A resolution: stereochemical implications of PLP-dependent amino acid decarboxylases. Structure Fold Des 1999, 7:567-581.
-
(1999)
Structure Fold Des.
, vol.7
, pp. 567-581
-
-
Kern, A.D.1
Oliveira, M.A.2
Coffino, P.3
Hackert, M.L.4
-
29
-
-
0029131487
-
Crystallographic structure of a PLP-dependent ornithine decarboxylase from Lactobacillus 30a to 3.0 A resolution
-
Momany C, Ernst S, Ghosh R, Chang NL and Hackert ML: Crystallographic structure of a PLP-dependent ornithine decarboxylase from Lactobacillus 30a to 3.0 A resolution. J Mol Biol 1995, 252:643-655.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 643-655
-
-
Momany, C.1
Ernst, S.2
Ghosh, R.3
Chang, N.L.4
Hackert, M.L.5
-
30
-
-
0028144138
-
Aspartate transcarbamylase from Escherichia coli: Activity and regulation
-
Lipscomb WN: Aspartate transcarbamylase from Escherichia coli: activity and regulation. Adv Enzymol Relat Areas Mol Biol 1994, 68:67-151.
-
(1994)
Adv. Enzymol. Relat. Areas Mol. Biol.
, vol.68
, pp. 67-151
-
-
Lipscomb, W.N.1
-
31
-
-
0033545974
-
Assessment of the allosteric mechanism of aspartate transcarbamoylase based on the crystalline structure of the unregulated catalytic subunit
-
Beernink PT, Endrizzi JA, Alber T and Schachman HK: Assessment of the allosteric mechanism of aspartate transcarbamoylase based on the crystalline structure of the unregulated catalytic subunit. Proc Natl Acad Sci U S A 1999, 96:5388-5393.
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 5388-5393
-
-
Beernink, P.T.1
Endrizzi, J.A.2
Alber, T.3
Schachman, H.K.4
-
32
-
-
0032919371
-
Protein folds and families: Sequence and structure alignments
-
Holm L and Sander C: Protein folds and families: sequence and structure alignments. Nucleic Acids Res 1999, 27:244-247.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 244-247
-
-
Holm, L.1
Sander, C.2
-
33
-
-
0033957469
-
SMART: A web-based tool for the study of genetically mobile domains
-
Schultz J, Copley RR, Doerks T, Ponting CP and Bork P: SMART: a web-based tool for the study of genetically mobile domains. Nucleic Acids Res 2000, 28:231-234.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 231-234
-
-
Schultz, J.1
Copley, R.R.2
Doerks, T.3
Ponting, C.P.4
Bork, P.5
-
34
-
-
0036087630
-
CDD: A database of conserved domain alignments with links to domain three-dimensional structure
-
Marchler-Bauer A, Panchenko AR, Shoemaker BA, Thiessen PA, Geer LY and Bryant SH: CDD: a database of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Res 2002, 30:281-283.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 281-283
-
-
Marchler-Bauer, A.1
Panchenko, A.R.2
Shoemaker, B.A.3
Thiessen, P.A.4
Geer, L.Y.5
Bryant, S.H.6
|