-
1
-
-
0003476818
-
-
Georgetown, TX: Landes Bioscience
-
Domingo E., Biebricher C.K., Eigen M., Holland J.J. Quasispecies and RNA Virus Evolution: Principles and Consequences. 2001;Landes Bioscience, Georgetown, TX.
-
(2001)
Quasispecies and RNA Virus Evolution: Principles and Consequences
-
-
Domingo, E.1
Biebricher, C.K.2
Eigen, M.3
Holland, J.J.4
-
2
-
-
0038441327
-
Evolution experiments with microorganisms: The dynamics and genetic bases of adaptation
-
Elena S.F., Lenski R.E. Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nature Rev. Genet. 4:2003;457-469.
-
(2003)
Nature Rev. Genet.
, vol.4
, pp. 457-469
-
-
Elena, S.F.1
Lenski, R.E.2
-
4
-
-
0015133749
-
Self-organization of matter and the evolution of macromolecules
-
Eigen M. Self-organization of matter and the evolution of macromolecules. Naturwissenschaften. 58:1971;465-523.
-
(1971)
Naturwissenschaften
, vol.58
, pp. 465-523
-
-
Eigen, M.1
-
7
-
-
0001980570
-
Darwinian selection of self-replicating RNA molecules
-
Biebricher C.K. Darwinian selection of self-replicating RNA molecules. Evol. Biol. 16:1983;1-52.
-
(1983)
Evol. Biol.
, vol.16
, pp. 1-52
-
-
Biebricher, C.K.1
-
8
-
-
0020437078
-
Self-replication with errors. a model for polynucleotide replication
-
Swetina J., Schuster P. Self-replication with errors. A model for polynucleotide replication. Biophys. Chem. 16:1982;329-345.
-
(1982)
Biophys. Chem.
, vol.16
, pp. 329-345
-
-
Swetina, J.1
Schuster, P.2
-
9
-
-
0024974481
-
Error thresholds of replication in finite populations, mutation frequencies and the onset of Muller's ratchet
-
Nowak M., Schuster P. Error thresholds of replication in finite populations, mutation frequencies and the onset of Muller's ratchet. J. Theor. Biol. 137:1989;375-395.
-
(1989)
J. Theor. Biol.
, vol.137
, pp. 375-395
-
-
Nowak, M.1
Schuster, P.2
-
10
-
-
0036133286
-
Is the quasispecies concept relevant to RNA viruses?
-
Holmes E.C., Moya A. Is the quasispecies concept relevant to RNA viruses? J. Virol. 76:2002;460-462.
-
(2002)
J. Virol.
, vol.76
, pp. 460-462
-
-
Holmes, E.C.1
Moya, A.2
-
12
-
-
0036132387
-
Quasispecies theory in virology
-
Domingo E. Quasispecies theory in virology. J. Virol. 76:2002;463-465.
-
(2002)
J. Virol.
, vol.76
, pp. 463-465
-
-
Domingo, E.1
-
13
-
-
0033944978
-
Natural selection: A phase transition?
-
Eigen M. Natural selection: a phase transition? Biophys. Chem. 85:2000;101-123.
-
(2000)
Biophys. Chem.
, vol.85
, pp. 101-123
-
-
Eigen, M.1
-
14
-
-
50549201557
-
The relation of recombination to mutational advantage
-
Muller H.J. The relation of recombination to mutational advantage. Mutat. Res. 1:1964;2-9.
-
(1964)
Mutat. Res.
, vol.1
, pp. 2-9
-
-
Muller, H.J.1
-
15
-
-
0025244957
-
Fitness of RNA virus decreased by Muller's ratchet
-
Chao L. Fitness of RNA virus decreased by Muller's ratchet. Nature. 348:1991;454-455.
-
(1991)
Nature
, vol.348
, pp. 454-455
-
-
Chao, L.1
-
16
-
-
0026729636
-
Rapid fitness losses in mammalian RNA virus clones due to Muller's ratchet
-
Duarte E.A., Clarke D.C., Moya A., Domingo E., Holland J.J. Rapid fitness losses in mammalian RNA virus clones due to Muller's ratchet. Proc. Natl Acad. Sci. USA. 89:1992;6015-6019.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 6015-6019
-
-
Duarte, E.A.1
Clarke, D.C.2
Moya, A.3
Domingo, E.4
Holland, J.J.5
-
17
-
-
0030606306
-
Genetic lesions associated with Muller's ratchet in an RNA virus
-
Escarmís C., Dávila M., Charpentier N., Bracho A., Moya A., Domingo E. Genetic lesions associated with Muller's ratchet in an RNA virus. J. Mol. Biol. 264:1996;255-267.
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 255-267
-
-
Escarmís, C.1
Dávila, M.2
Charpentier, N.3
Bracho, A.4
Moya, A.5
Domingo, E.6
-
18
-
-
0345471842
-
Drastic fitness loss in human immunodeficiency virus type 1 upon serial bottleneck events
-
Yuste E., Sánchez-Palomino S., Casado C., Domingo E., López-Galíndez C. Drastic fitness loss in human immunodeficiency virus type 1 upon serial bottleneck events. J. Virol. 73:1999;2745-2751.
-
(1999)
J. Virol.
, vol.73
, pp. 2745-2751
-
-
Yuste, E.1
Sánchez-Palomino, S.2
Casado, C.3
Domingo, E.4
López-Galíndez, C.5
-
19
-
-
0027509085
-
Genetic bottlenecks and population passages cause profound fitness differences in RNA viruses
-
Clarke D.K., Duarte E.A., Moya A., Elena S.F., Domingo E., Holland J.J. Genetic bottlenecks and population passages cause profound fitness differences in RNA viruses. J. Virol. 67:1993;222-228.
-
(1993)
J. Virol.
, vol.67
, pp. 222-228
-
-
Clarke, D.K.1
Duarte, E.A.2
Moya, A.3
Elena, S.F.4
Domingo, E.5
Holland, J.J.6
-
20
-
-
0028227603
-
Subclonal components of consensus fitness in an RNA virus clone
-
Duarte E.A., Novella I.S., Ledesma S., Clarke D.K., Moya A., Elena S.F., et al. Subclonal components of consensus fitness in an RNA virus clone. J. Virol. 68:1994;4295-4301.
-
(1994)
J. Virol.
, vol.68
, pp. 4295-4301
-
-
Duarte, E.A.1
Novella, I.S.2
Ledesma, S.3
Clarke, D.K.4
Moya, A.5
Elena, S.F.6
-
21
-
-
0028922116
-
Size of bottleneck leading to fitness loss is determined by the mean initial population fitness
-
Novella I.S., Elena S.F., Moya A., Domingo E., Holland J.J. Size of bottleneck leading to fitness loss is determined by the mean initial population fitness. J. Virol. 69:1995;2869-2872.
-
(1995)
J. Virol.
, vol.69
, pp. 2869-2872
-
-
Novella, I.S.1
Elena, S.F.2
Moya, A.3
Domingo, E.4
Holland, J.J.5
-
22
-
-
0032902001
-
Exponential fitness gains of RNA virus populations are limited by bottleneck effects
-
Novella I.S., Quer J., Domingo E., Holland J.J. Exponential fitness gains of RNA virus populations are limited by bottleneck effects. J. Virol. 73:1999;1668-1671.
-
(1999)
J. Virol.
, vol.73
, pp. 1668-1671
-
-
Novella, I.S.1
Quer, J.2
Domingo, E.3
Holland, J.J.4
-
23
-
-
0042696200
-
Contributions of vesicular stomatitis virus to the understanding of RNA virus evolution
-
Novella I.S. Contributions of vesicular stomatitis virus to the understanding of RNA virus evolution. Curr. Opin. Microbiol. 6:2003;399-405.
-
(2003)
Curr. Opin. Microbiol.
, vol.6
, pp. 399-405
-
-
Novella, I.S.1
-
25
-
-
0027273314
-
A small highly basic protein is encoded in overlapping frame within the P-gene of vesicular stomatitis virus
-
Spiropoulou C.F., Nichol S.T. A small highly basic protein is encoded in overlapping frame within the P-gene of vesicular stomatitis virus. J. Virol. 67:1993;3103-3110.
-
(1993)
J. Virol.
, vol.67
, pp. 3103-3110
-
-
Spiropoulou, C.F.1
Nichol, S.T.2
-
26
-
-
0036311547
-
Identification of two additional translation products from the matrix (M) gene that contribute to vesicular stomatitis virus cytopathology
-
Jayakar H.R., Whitt M.A. Identification of two additional translation products from the matrix (M) gene that contribute to vesicular stomatitis virus cytopathology. J. Virol. 76:2002;8011-8018.
-
(2002)
J. Virol.
, vol.76
, pp. 8011-8018
-
-
Jayakar, H.R.1
Whitt, M.A.2
-
27
-
-
0030573004
-
Reproducible non-linear population dynamics and critical points during replicative competitions of RNA virus quasispecies
-
Quer J., Huerta R., Novella I.S., Tsimring L., Domingo E., Holland J.J. Reproducible non-linear population dynamics and critical points during replicative competitions of RNA virus quasispecies. J. Mol. Biol. 264:1996;465-471.
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 465-471
-
-
Quer, J.1
Huerta, R.2
Novella, I.S.3
Tsimring, L.4
Domingo, E.5
Holland, J.J.6
-
28
-
-
0034908794
-
Contingent neutrality in competing virus populations
-
Quer J., Hershey C.L., Domingo E., Holland J.J., Novella I.S. Contingent neutrality in competing virus populations. J. Virol. 75:2001;7315-7320.
-
(2001)
J. Virol.
, vol.75
, pp. 7315-7320
-
-
Quer, J.1
Hershey, C.L.2
Domingo, E.3
Holland, J.J.4
Novella, I.S.5
-
29
-
-
0029072721
-
Exponential increases of RNA virus fitness during large population transmissions
-
Novella I.S., Duarte E.A., Elena S.F., Moya A., Domingo E., Holland J.J. Exponential increases of RNA virus fitness during large population transmissions. Proc. Natl Acad. Sci. USA. 92:1995;5841-5844.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 5841-5844
-
-
Novella, I.S.1
Duarte, E.A.2
Elena, S.F.3
Moya, A.4
Domingo, E.5
Holland, J.J.6
-
30
-
-
0024431579
-
Virus mutation frequencies can be greatly underestimated by monoclonal-antibody neutralization of virions
-
Holland J.J., de la Torre J.C., Steinhauer D.A., Clarke D.C., Duarte E.A., Domingo E. Virus mutation frequencies can be greatly underestimated by monoclonal-antibody neutralization of virions. J. Virol. 63:1989;5030-5036.
-
(1989)
J. Virol.
, vol.63
, pp. 5030-5036
-
-
Holland, J.J.1
De La Torre, J.C.2
Steinhauer, D.A.3
Clarke, D.C.4
Duarte, E.A.5
Domingo, E.6
-
31
-
-
0034030441
-
Memory in viral quasispecies
-
Ruiz-Jarabo C.M., Arias A., Baranowski E., Escarmís C., Domingo E. Memory in viral quasispecies. J. Virol. 74:2000;3543-3547.
-
(2000)
J. Virol.
, vol.74
, pp. 3543-3547
-
-
Ruiz-Jarabo, C.M.1
Arias, A.2
Baranowski, E.3
Escarmís, C.4
Domingo, E.5
-
32
-
-
0036306528
-
Duration and fitness dependence of quasispecies memory
-
Ruiz-Jarabo C.M., Arias A., Molina-París C., Briones C., Baranowski E., Escarmís C., Domingo E. Duration and fitness dependence of quasispecies memory. J. Mol. Biol. 315:2002;285-296.
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 285-296
-
-
Ruiz-Jarabo, C.M.1
Arias, A.2
Molina-París, C.3
Briones, C.4
Baranowski, E.5
Escarmís, C.6
Domingo, E.7
-
33
-
-
2942549839
-
Phenotypic mixing and hiding may contribute to memory in viral quasispecies
-
Wilke C.O., Novella I.S. Phenotypic mixing and hiding may contribute to memory in viral quasispecies. BMC Microbiol. 3:2003;11.
-
(2003)
BMC Microbiol.
, vol.3
, pp. 11
-
-
Wilke, C.O.1
Novella, I.S.2
-
34
-
-
0346922470
-
Replication at periodically changing muliplicity of infection promotes stable coexistence of competing viral populations
-
In the press
-
Wilke C.O., Reissig D.D., Novella I.S. Replication at periodically changing muliplicity of infection promotes stable coexistence of competing viral populations. Evolution. 2004;. In the press.
-
(2004)
Evolution
-
-
Wilke, C.O.1
Reissig, D.D.2
Novella, I.S.3
-
35
-
-
0028838604
-
Extreme fitness differences in mammalian and insect hosts after continuous replication of vesicular stomatitis virus in sandfly cells
-
Novella I.S., Clarke D.K., Quer J., Duarte E.A., Lee C.H., Weaver S.C., et al. Extreme fitness differences in mammalian and insect hosts after continuous replication of vesicular stomatitis virus in sandfly cells. J. Virol. 69:1995;6805-6809.
-
(1995)
J. Virol.
, vol.69
, pp. 6805-6809
-
-
Novella, I.S.1
Clarke, D.K.2
Quer, J.3
Duarte, E.A.4
Lee, C.H.5
Weaver, S.C.6
-
36
-
-
0028276791
-
The red queen reigns in the kingdom of RNA viruses
-
Clarke D.K., Duarte E.A., Elena S.F., Moya A., Domingo E., Holland J.J. The red queen reigns in the kingdom of RNA viruses. Proc. Natl Acad. Sci. USA. 91:1994;4821-4824.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 4821-4824
-
-
Clarke, D.K.1
Duarte, E.A.2
Elena, S.F.3
Moya, A.4
Domingo, E.5
Holland, J.J.6
-
37
-
-
0034057329
-
Evolutionarily related Sindbis-like plant viruses maintain different levels of population diversity in a common host
-
Schneider W.L., Roossinck M.J. Evolutionarily related Sindbis-like plant viruses maintain different levels of population diversity in a common host. J. Virol. 74:2000;3130-3134.
-
(2000)
J. Virol.
, vol.74
, pp. 3130-3134
-
-
Schneider, W.L.1
Roossinck, M.J.2
-
38
-
-
0034990080
-
Genetic diversity in RNA virus quasispecies is controlled by host-virus interactions
-
Schneider W.L., Roossinck M.J. Genetic diversity in RNA virus quasispecies is controlled by host-virus interactions. J. Virol. 75:2001;6566-6571.
-
(2001)
J. Virol.
, vol.75
, pp. 6566-6571
-
-
Schneider, W.L.1
Roossinck, M.J.2
-
39
-
-
0035913336
-
Evolution of digital organisms at high mutation rates leads to survival of the flattest
-
Wilke C.O., Wang J.L., Ofria C., Lenski R.E., Adami C. Evolution of digital organisms at high mutation rates leads to survival of the flattest. Nature. 412:2001;331-333.
-
(2001)
Nature
, vol.412
, pp. 331-333
-
-
Wilke, C.O.1
Wang, J.L.2
Ofria, C.3
Lenski, R.E.4
Adami, C.5
-
40
-
-
0034632830
-
Evolvability of an RNA virus is determined by its mutational neighbourhood
-
Burch C.L., Chao L. Evolvability of an RNA virus is determined by its mutational neighbourhood. Nature. 406:2000;625-628.
-
(2000)
Nature
, vol.406
, pp. 625-628
-
-
Burch, C.L.1
Chao, L.2
-
41
-
-
0033055004
-
Evolution by small steps and rugged landscapes in the RNA virus φ6
-
Burch C.L., Chao L. Evolution by small steps and rugged landscapes in the RNA virus φ6. Genetics. 151:1999;921-927.
-
(1999)
Genetics
, vol.151
, pp. 921-927
-
-
Burch, C.L.1
Chao, L.2
-
42
-
-
17144461473
-
Multiple molecular pathways for fitness recovery of an RNA virus debilitated by operation of Muller's ratchet
-
Escarmís C., Dávila M., Domingo E. Multiple molecular pathways for fitness recovery of an RNA virus debilitated by operation of Muller's ratchet. J. Mol. Biol. 285:1999;495-505.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 495-505
-
-
Escarmís, C.1
Dávila, M.2
Domingo, E.3
-
43
-
-
0032804864
-
Increased fitness of drug-resistant HIV-1 protease as a result of acquisition of compensatory mutations during suboptimal therapy
-
Nijhuis M., Schuurman R., de Jong D., Erickson J., Gustchina E., Albert J., et al. Increased fitness of drug-resistant HIV-1 protease as a result of acquisition of compensatory mutations during suboptimal therapy. AIDS. 13:1999;2349-2359.
-
(1999)
AIDS
, vol.13
, pp. 2349-2359
-
-
Nijhuis, M.1
Schuurman, R.2
De Jong, D.3
Erickson, J.4
Gustchina, E.5
Albert, J.6
-
44
-
-
0001771498
-
Evolution in Mendelian populations
-
Wright S. Evolution in Mendelian populations. Genetics. 16:1931;97-159.
-
(1931)
Genetics
, vol.16
, pp. 97-159
-
-
Wright, S.1
-
46
-
-
0002027029
-
A new evolutionary law
-
van Valen L. A new evolutionary law. Evol. Theor. 1:1973;1-30.
-
(1973)
Evol. Theor.
, vol.1
, pp. 1-30
-
-
Van Valen, L.1
-
48
-
-
0029118831
-
Efficient recovery of infectious vesicular stomatitis virus entirely from cDNA clones
-
Whelan S.P.J., Ball L.A., Barr J.N., Wertz G.W. Efficient recovery of infectious vesicular stomatitis virus entirely from cDNA clones. Proc. Natl Acad. Sci. USA. 92:1995;8388-8392.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 8388-8392
-
-
Whelan, S.P.J.1
Ball, L.A.2
Barr, J.N.3
Wertz, G.W.4
-
49
-
-
0020002482
-
The interactions of antibody with the major surface glycoprotein of vesicular stomatitis virus. 1. Analysis of neutralizing epitopes with monoclonal antibodies
-
Lefrancois L., Lyles D.S. The interactions of antibody with the major surface glycoprotein of vesicular stomatitis virus. 1. Analysis of neutralizing epitopes with monoclonal antibodies. Virology. 121:1982;157-167.
-
(1982)
Virology
, vol.121
, pp. 157-167
-
-
Lefrancois, L.1
Lyles, D.S.2
-
50
-
-
0026070176
-
Quantitation of relative fitness and great adaptability of clonal populations of RNA viruses
-
Holland J.J., de la Torre J.C., Clarke D.C., Duarte E. Quantitation of relative fitness and great adaptability of clonal populations of RNA viruses. J. Virol. 65:1991;2960-2967.
-
(1991)
J. Virol.
, vol.65
, pp. 2960-2967
-
-
Holland, J.J.1
De La Torre, J.C.2
Clarke, D.C.3
Duarte, E.4
|