Analyses of Possible Domestic Pig Contribution in Two Populations of Finnish Farmed Wild Boar

Acta Agriculturae Scandinavica - Section A: Animal Science

Volumn 53, Issue 4, 2003, Pages 161-165

  Gongora, J ^a   Peltoniemi, O A T ^b   Tammen, I ^a   Raadsma, H ^a   Moran, C ^a  

^a UNIVERSITY OF SYDNEY   (Australia)

^b UNIVERSITY OF HELSINKI   (Finland)

Author keywords

D loop; GPIP; MC1R

Indexed keywords

ANIMALIA; SUS SCROFA; SUS SCROFA DOMESTICA;

EID: 0347543862     PISSN: 09064702     EISSN: None     Source Type: Journal    
DOI: 10.1080/09064710310010602     Document Type: Article

References (19)

1. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
2. Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package) Version 3.5c. Department of Genetics, University of Washington, Seattle.
3. Ghivizzani, S.C., Mackay, L.S.D., Madsen, C.S., Laipis, P.J. & Hauswirth, W.W. 1993. Transcribed heteroplasmic repeated sequences in the porcine mitochondrial DNA D-loop region. J. Mol. Evol. 37, 36-47.
4. Giuffra, E., Kijas, J.M.H., Amarger, Y., Carlborg, Ö., Jeon, J.-T. & Andersson, L. 2000. The origin of the domestic pig: independent domestication and subsequent introgression. Genetics 154, 1785-1791.
5. Hasegawa, M., Kishino, H. & Yano, T. 1985. Dating of the human ape: splitting by a molecular clock. J. Mol. Evol. 22, 160-174.
6. Ishiguro, N., Naya, Y., Horiuchi, M. & Shinagawa, M. 2002. A genetic method to distinguish crossbred Inobuta from Japanese Wild Boars. Zoolog. Sci. 19, 1313-1319.
7. Kijas, J.M.H. & Andersson, L. 2001. A phylogenetic study of the origin of the domestic pig estimated from the near-complete mtDNA genome. J. Mol. Evol. 52, 302-308.
8. Kijas, J.M.H., Wales, R., Törnsten, A., Chardon, P., Moller, M. & Andersson, L. 1998. Melanocortin receptor 1 (MC1R) mutations and coat color in pigs. Genetics 150, 1177-1185.
9. Kim, K-I., Lee, J-H., Li, K., Zhang, Y-P., Lee, S-S., Gongora, J. & Moran, C. 2002. Phylogenetic relationships of Asian and European pig breeds determined by mitochondrial DNA D-loop sequence polymorphism. Anim. Genet. 33, 19-25.
10. Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120.
11. Mauget, R. 1982. Seasonally of reproduction in the Wild Boar, control of pig reproduction. Butterworth Scientific, London, UK, pp. 509-526.
12. Naya, Y., Horiuchi, M., Ishiguro, N. & Shinagawa, M. 2003. Bacteriological and genetic assessment of the game meat from Japanese Wild Boars. J. Agric. Food. Chem. 51, 345-349.
13. Okumura, N., Ishiguro, N., Nakano, N., Hirai, K., Matsui, A. & Sahara, M. 1996. Geographic population structure and sequence divergence in the mitochondrial DNA control region of the Japanese Wild Boar (Sus scrofa leucomystax), with reference to those of domestic pigs. Biochem. Genet. 34, 179-189.
14. Okumura, N., Kurosawa, Y., Kobayashi, E., Watanobe, T., Ishiguro, N., Yassue, H. & Mitsuhashi, T. 2001. Genetic relationship amongst the major non-coding regions of mitochondrial DNAs in wild boars and several breeds of domesticated pigs. Anim. Genet. 32, 139-147.
15. Saitou, N. & Nei, M. 1987. The Neighbor-joining method: a new method for reconstructing phylogenetic tree. Mol. Biol. Evol. 4, 406-425.
16. Swofford, D.L. (2000) PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4.0 beta. Sinauer Associates, Sunderland, MA.
17. Takeda, K., Onishi, A., Ishida, N., Kawakami, K., Komatsu, S. & Inumaru, S. 1995. SSCP analysis of pig mitochondrial DNA D-loop region polymorphism. Anim. Genet. 26, 321-326.
18. Thompson, J.D., Higgins, D.G. & Gibson, T.J. 1994. CLUSTAL-W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
19. Watanobe, T., Ishiguro, N., Okumura, N., Nakano, M., Matsui, A., Hongo, H. & Ushiro, H. 2001. Ancient mitochondrial DNA reveals the origin of Sus scrofa from Rebun Island, Japan. J. Mol. Evol. 52, 281-289.