DNA sequence-specific recognition of peptides incorporating the HPRK and polyamide motifs

Bioorganic and Medicinal Chemistry

Volumn 12, Issue 1, 2004, Pages 53-61

  Chang, Jung Cheng ^a   Yang, Chia Hung ^a   Chou, Ping Yen ^a   Yang, Wan Hsu ^a   Chou, I Chun ^a   Lu, Ching Tai ^a   Lin, Pei Hsuan ^a   Hou, Rolis Chien Wei ^b   Jeng, Kee Ching G ^b   Cheng, Chien Chung ^c   Sheh, Leung ^a  

^a TUNGHAI UNIVERSITY   (Taiwan)

^b TAICHUNG VETERANS GENERAL HOSPITAL   (Taiwan)

^c TAMKANG UNIVERSITY   (Taiwan)

Author keywords

HPRK motif; Polyamide conjugates; Quantitative DNase I footprinting

Indexed keywords

CARBOXYLIC ACID DERIVATIVE; DEOXYRIBONUCLEASE I; DNA; DNA BASE; DOUBLE STRANDED DNA; PEPTIDE; PHOSPHORUS 32; POLYAMIDE; PROTON;

ARTICLE; BINDING AFFINITY; DNA FOOTPRINTING; DNA SEQUENCE; DNA STRAND; GENE INTERACTION; ISOTOPE LABELING; METHODOLOGY; MOLECULAR RECOGNITION; PROTEIN BINDING; PROTEIN MOTIF; QUANTITATIVE ANALYSIS; SEQUENCE ANALYSIS; SOLID; SYNTHESIS;

EID: 0347301860     PISSN: 09680896     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bmc.2003.10.049     Document Type: Article

References (31)

1. Katagiri, K.; Yoshida, T.; Sato, K. In Antibiotics; Corcoran, J. W., Hahn, F. E., Eds.; Springer: Berlin, 1975; Vol. 3, p 234.
2. Waring, M. J. In Antibiotics; Hahn, F. E., Eds.; Springer: Berlin, 1979; Vol. 5, p 173.
3. Wang A.H.-J., Ughetto G., Quigley G.J., Hakoshima T., van der Marel G.A., van Boom J.H., Rich A. Science. 225:1984;1115.
4. Boger D.L., Chen J.-H., Saionz K.W. J. Am. Chem. Soc. 118:1996;1629.
5. Chaires, J. B. In Advances in DNA Sequence Specific Agents; Hurley, L. H., Chaires, J. B., Eds.; Elsevier Health Sciences, 1996; Vol. 2, p 141.
6. Chaires J.B., Fox K.R., Herrera J.E., Britt M., Waring M.J. Biochemistry. 26:1987;8227.
7. Bailly C., Suh D., Waring M.J., Chaires J.B. Biochemistry. 37:1998;1033.
8. Bailly C., Chaires J.B. Bioconjugate Chem. 9:1998;513.
9. Van Dyke M.W., Hertzberg R.P., Dervan P.B. Proc. Natl. Acad. Sci. U.S.A. 79:1983;5470.
10. Portugal J., Waring M.J. Eur. J. Biochem. 167:1987;281.
11. Abu-Daya A., Brown F.M., Fox K.R. Nucleic. Acids Res. 23:1995;3385.
12. Bailly C., Colson P., Houssier C., Houssin R., Mrani D., Gosselin G., Imbach J.L., Waring M.J., Lown J.W., Heinichart J.P. Biochemistry. 31:1992;8349.
13. Urbach A.R., Dervan P.B. Proc. Natl. Acad. Sci. U.S.A. 98:2001;4343.
14. Geierstanger B.H., Mrksich M., Dervan P.B., Wemmer D.E. Science. 266:1994;646.
15. Chen Y.-H., Lown J.W. J. Am. Chem. Soc. 116:1994;6995.
16. Sigman D.S., Mazumder A., Perrin D.M. Chem. Rev. 93:1993;2295.
17. Helissey P., Bailly C., Vishwakarma J.N., Auclair C., Waring M.J., Giorgi-Renault S. Anti-Cancer Drug Des. 11:1996;527.
18. Meunier B. Chem. Rev. 92:1992;141.
19. Abraham A.T., Zhou X., Hecht S.M. J. Am. Chem. Soc. 121:1999;1982.
20. Hashimoto S., Wang B., Hecht S.M. J. Am. Chem. Soc. 123:2001;7437.
21. Minnock A., Lin L.S., Morgan J., Crow S.D.G., Waring M.J., Sheh L. Bioconjugate Chem. 12:2001;870.
22. Cheng C.-T., Lo V., Chen J., Chen W.-C., Lin C.-Y, Lin H.-C., Yang C.-H., Sheh L. Bioorg. Med. Chem. 9:2001;1493.
23. Yang C.-H., Chou P.-J., Luo Z.-L., Chou I.-C., Chang J.-C., Cheng C.-C., Martin C.R.H., Waring M.J., Sheh L. Bioorg. Med. Chem. 11:2003;3279.
24. Churchill M.E.A., Suzuki M. EMBO J. 8:1989;4189.
25. Suzuki M. EMBO J. 8:1989;797.
26. Suzuki M. J. Mol. Biol. 207:1989;61.
27. Suzuki M. Nature. 344:1990;562.
28. Sayers E.W., Waring M.J. Biochemistry. 32:1993;9094.
29. Luscombe N.M., Laskowski R.A., Thornton J.M. Nucleic Acids Res. 29:2001;2860.
30. Bailly C., Perrine D., Lancelot J.-C., Saturnino C., Robba M., Waring M.J. Biochem. J. 323:1997;23. and references quoted therein.
31. Waring, M. J. Personal communications.