Proteome reference map of Pseudomonas putida strain KT2440 for genome expression profiling: Distinct responses of KT2440 and Pseudomonas aeruginosa strain PAO1 to iron deprivation and a new form of superoxide dismutase

Environmental Microbiology

Volumn 5, Issue 12, 2003, Pages 1257-1269

  Heim, S ^a   Ferrer, M ^a   Heuer, H ^a   Regenhardt, D ^a   Nimtz, M ^a   Timmis, K N ^a  

^a HELMHOLTZ CENTRE FOR INFECTION RESEARCH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; IRON; IRON UPTAKE REGULATION PROTEIN, BACTERIA; IRON-UPTAKE REGULATION PROTEIN, BACTERIA; MESSENGER RNA; PROTEIN SUBUNIT; PROTEOME; REPRESSOR PROTEIN; SODA PROTEIN, BACTERIA; SODB PROTEIN, BACTERIA; SUPEROXIDE DISMUTASE;

ADAPTATION; AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; DIMERIZATION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; MASS SPECTROMETRY; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; PHYSIOLOGY; PSEUDOMONAS PUTIDA; REGULON; SEQUENCE ALIGNMENT; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ADAPTATION, BIOLOGICAL; AMINO ACID SEQUENCE; BACTERIAL PROTEINS; DIMERIZATION; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; IRON; MOLECULAR SEQUENCE DATA; PROTEIN SUBUNITS; PROTEOME; PSEUDOMONAS PUTIDA; REGULON; REPRESSOR PROTEINS; RNA, MESSENGER; SEQUENCE ALIGNMENT; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; SUPEROXIDE DISMUTASE; TRANSCRIPTION, GENETIC;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; PROKARYOTA; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA; PSEUDOMONAS PUTIDA;

EID: 0346936145     PISSN: 14622912     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2003.00465.x     Document Type: Article

References (29)

1. Bagdasarian, M., Lurz, R., Rückert, B., Franklin, F.C.H., Bagdasarian, M.M., Frey, J., and Timmis, K.N. (1981) Specific-purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Pseudomonas. Gene 16: 237-247.
2. Beauchamp, C., and Fridovich, I. (1971) Superoxide dismutase: improved assays and assay application to acrylamide gels. Anal Biochem 44: 276-287.
3. Beyer, W.F., Jr, Reynolds, J.A., and Fridovich, I. (1989) Differences between the manganese-and the iron-containing superoxide dismutases of Escherichia coli detected through sedimentation equilibrium, hydrodynamic, and spectroscopic studies. Biochemistry 28: 4403-4409.
4. Blum, H., Beier, H., and Gross, H.J. (1987) Improved silver staining of plant proteins, RNA and DNA in polyacrylamide gels. Electrophoresis 8: 93-99.
5. Bradford, M.M. (1976) A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254.
6. Brinkman, F.S., Bains, M., and Hancock, R.E. (2000) The amino terminus of Pseudomonas aeruginosa outer membrane protein OprF forms channels in lipid bilayer membranes: correlation with a three-dimensional model. J Bacteriol 182: 5251-5255.
7. Bühler, B., Witholt, B., Hauer, B., and Schmid, A. (2002) Characterization and application of xylene monooxygenase for multistep biocatalysis. Appl Environ Microbiol 68: 560-568.
8. Cases, I., Velazquez, F., and de Lorenzo, V. (2001) Role of ptsO in carbon-mediated inhibition of the Pu promoter belonging to the pWWO Pseudomonas putida plasmid. J Bacteriol 183: 5128-5133.
9. Cordwell, S.J., Nouwens, A.S., and Walsh, B.J. (2001) Comparative proteomics of bacterial pathogens. Proteomics 1: 461-472.
10. Cornelis, P., and Matthijs, S. (2002) Diversity of siderophore-mediated iron uptake systems in fluorescent pseudomonads: not only pyoverdines. Environ Microbiol 4: 787-798.
11. Dinkla, I.J., Gabor, E.M., and Janssen, D.B. (2001) Effects of iron limitation on the degradation of toluene by Pseudomonas strains carrying the toi (pWWO) plasmid. Appl Environ Microbiol 67: 3406-3412.
12. Espinosa-Urgel, M., Salido, A., and Ramos, J.L. (2000) Genetic analysis of functions involved in adhesion of Pseudomonas putida to seeds. J Bacteriol 182: 2363-2369.
13. Federal Register (1982) Appendix E, Certified host-vector systems. 47: 17197.
14. Görg, A. (1991) Two-dimensional electrophoresis. Nature 349: 545-546.
15. Kasai, Y., Inoue, J., and Harayama, S. (2001) The TOL plasmid pWWO xylN gene product from Pseudomonas putida is involved in m-xylene uptake. J Bacteriol 183: 6662-6666.
16. Katsuwon, J., and Anderson, A.J. (1989) Response of plant-colonizing pseudomonads to hydrogen peroxide. Appl Environ Microbiol 55: 2985-2989.
17. Kim, Y.C., Miller, C.D., and Anderson, A.J. (1999) Transcriptional regulation by iron of genes encoding iron-and manganese-superoxide dismutase from Pseudomonas putida. Gene 239: 129-135.
18. Klinke, S., Dauner, M., Scott, G., Kessler, B., and Witholt, B. (2000) Inactivation of isocitrate lyase leads to increased production of medium-chain-length poly (3-hydroxyalkanoates) in Pseudomonas putida. Appl Environ Microbiol 66: 909-913.
19. Leopold, K., Jacobsen, S., and Nybroe, O. (1997) A phosphate-starvation- inducible outer-membrane protein of Pseudomonas fluorescens Ag1 as an immunological phosphate-starvation marker. Microbiology 143: 1019-1027.
20. Llamas, M.A., Ramos, J.L., and Rodriguez-Herva, J.J. (2003) Transcriptional organization of the Pseudomonas putida tol-oprL genes. J Bacteriol 185: 184-195.
21. Martinez-Bueno, M.A., Tobe, S.R., Rey, M., and Ramos, J.L (2002) Detection of multiple extracytoplasmic function (ECF) sigma factors in the genome of Pseudomonas putida KT2440 and their counterparts in Pseudomonas aeruginosa PA01. Environ Microbiol 4: 842-855.
22. Münch, R., Hiller, K., Barg, H., Heldt, D., Linz, S., Wingender, E., and Jahn, D. (2003) PRODORIC: prokaryotic database of gene regulation. Nucleic Acids Res 31: 266-269.
23. Nelson, K.E., Weinel, C., Paulsen, I.T., Dodson, R.J., Hilbert, H., Martins Dos Santos, V., et al. (2002) The complete genome sequence of Pseudomonas putida KT2440: insights into diversity and virulence of the Pseudomonads. Environ Microbiol 4: 799-808.
24. Prescott, D.J., and Vagelos, R.P. (1972) Acyl carrier protein. Adv Enzymol Relat Areas Mol Biol 36: 269-311.
25. Regenhardt, D., Heuer, H., Heim, S., Fernandez, D.U., Strömpl, C., Moore, E.R.B., and Timmis, K.N. (2002) Pedigree and taxonomic credentials of Pseudomonas putida strain KT2440. Environ Microbiol 4: 912-915.
26. Ronchel, M.C., and Ramos, J.L. (2001) Dual system to reinforce biological containment of recombinant bacteria designed for rhizoremediation. Appl Environ Microbiol 67: 2649-2656.
27. Stover, C.K., Pham, X.Q., Erwin, A.L., Mizoguchi, S.D., Warrener, P., Hickey, M.J., et al. (2000) Complete genome sequence of Pseudomonas aeruginosa PA01, an opportunistic pathogen. Nature 406: 959-964.
28. Timmis, K.N. (2002) Pseudomonas putida: a cosmopolitan opportunist par excellence. Environ Microbiol 4: 779-781.
29. Wissing, J., Heim, S., Flohè, L., Bilitewski, U., and Frank, R. (2000) Enrichment of hydrophobic proteins via Triton X-114 phase partitioning and hydroxyapatite column chromatography for mass spectrometry. Electrophoresis 21: 2589-2593.