메뉴 건너뛰기




Volumn 22, Issue 1, 2004, Pages 98-103

Unraveling protein interaction networks with near-optimal efficiency

Author keywords

[No Author keywords available]

Indexed keywords

GENES; GENETIC ENGINEERING; PROTEINS;

EID: 0346725930     PISSN: 10870156     EISSN: None     Source Type: Journal    
DOI: 10.1038/nbt921     Document Type: Article
Times cited : (71)

References (23)
  • 1
    • 0003037529 scopus 로고
    • Reducibility among combinatorial problems
    • (eds. Miller, R.E. & Thatcher, J.W.) (Plenum Press, New York)
    • Karp, R.M. Reducibility among combinatorial problems. in Complexity of Computer Computations (eds. Miller, R.E. & Thatcher, J.W.) 85-103 (Plenum Press, New York, 1972).
    • (1972) Complexity of Computer Computations , pp. 85-103
    • Karp, R.M.1
  • 3
    • 0345928693 scopus 로고    scopus 로고
    • Building and analysing genome-wide gene disruption networks
    • Rung, J., Schlitt, T., Brazma, A., Freivalds, K. & Vilo, J. Building and analysing genome-wide gene disruption networks. Bioinformatics 18 Suppl 2, S202-210 (2002).
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 2
    • Rung, J.1    Schlitt, T.2    Brazma, A.3    Freivalds, K.4    Vilo, J.5
  • 4
    • 0037224447 scopus 로고    scopus 로고
    • Does mapping reveal correlation between gene expression and protein-protein interaction?
    • author reply 16-17
    • Mrowka, R., Liebermeister, W. & Holste, D. Does mapping reveal correlation between gene expression and protein-protein interaction? Nat. Genet. 33, 15-16; author reply 16-17 (2003).
    • (2003) Nat. Genet. , vol.33 , pp. 15-16
    • Mrowka, R.1    Liebermeister, W.2    Holste, D.3
  • 5
    • 0035733690 scopus 로고    scopus 로고
    • Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
    • Ge, H., Liu, Z., Church, G.M. & Vidal, M. Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae. Nat. Genet. 29, 482-486 (2001).
    • (2001) Nat. Genet. , vol.29 , pp. 482-486
    • Ge, H.1    Liu, Z.2    Church, G.M.3    Vidal, M.4
  • 6
    • 0037163907 scopus 로고    scopus 로고
    • Protein interaction networks beyond artifacts
    • Maslov, S. & Sneppen, K. Protein interaction networks beyond artifacts. FEBS Lett. 530, 255-256 (2002).
    • (2002) FEBS Lett. , vol.530 , pp. 255-256
    • Maslov, S.1    Sneppen, K.2
  • 7
    • 0037163883 scopus 로고    scopus 로고
    • Potential artefacts in protein-interaction networks
    • Aloy, P. & Russell, R.B. Potential artefacts in protein-interaction networks. FEBS Lett. 530, 253-254 (2002).
    • (2002) FEBS Lett. , vol.530 , pp. 253-254
    • Aloy, P.1    Russell, R.B.2
  • 8
    • 0037435031 scopus 로고    scopus 로고
    • From words to literature in structural proteomics
    • Sali, A., Glaeser, R., Earnest, T. & Baumeister, W. From words to literature in structural proteomics. Nature 422, 216-225 (2003).
    • (2003) Nature , vol.422 , pp. 216-225
    • Sali, A.1    Glaeser, R.2    Earnest, T.3    Baumeister, W.4
  • 9
    • 0030950735 scopus 로고    scopus 로고
    • Human whole-genome shotgun sequencing
    • Weber, J.L. & Myers, E.W. Human whole-genome shotgun sequencing. Genome Res. 7, 401-409 (1997).
    • (1997) Genome Res. , vol.7 , pp. 401-409
    • Weber, J.L.1    Myers, E.W.2
  • 11
    • 0033930882 scopus 로고    scopus 로고
    • BIND-a data specification for storing and describing biomolecular interactions, molecular complexes and pathways
    • Bader, G.D. & Hogue, C.W. BIND-a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bioinformatics 16, 465-477 (2000).
    • (2000) Bioinformatics , vol.16 , pp. 465-477
    • Bader, G.D.1    Hogue, C.W.2
  • 12
    • 0033971642 scopus 로고    scopus 로고
    • DIP: The database of interacting proteins
    • Xenarios, I. et al. DIP: the database of interacting proteins. Nucleic Acids Res. 28, 289-291 (2000).
    • (2000) Nucleic Acids Res. , vol.28 , pp. 289-291
    • Xenarios, I.1
  • 13
    • 0037621728 scopus 로고    scopus 로고
    • Progress in establishing common standards for exchanging proteomics data: The second meeting of the HUPO Proteomics Standards Initiative
    • Orchard, S. et al. Progress in establishing common standards for exchanging proteomics data: the second meeting of the HUPO Proteomics Standards Initiative. Comparative and Functional Genomics 4, 203-206 (2003).
    • (2003) Comparative and Functional Genomics , vol.4 , pp. 203-206
    • Orchard, S.1
  • 14
    • 0037447257 scopus 로고    scopus 로고
    • Assessing experimentally derived interactions in a small world
    • Goldberg, D.S. & Roth, F.P. Assessing experimentally derived interactions in a small world. Proc. Natl. Acad. Sci. USA 100, 4372-4376 (2003).
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 4372-4376
    • Goldberg, D.S.1    Roth, F.P.2
  • 15
    • 0242500972 scopus 로고    scopus 로고
    • Construction of reliable protein-protein interaction networks with a new interaction generality measure
    • Saito, R., Suzuki, H. & Hayashizaki, Y. Construction of reliable protein-protein interaction networks with a new interaction generality measure. Bioinformatics 19, 756-763 (2003).
    • (2003) Bioinformatics , vol.19 , pp. 756-763
    • Saito, R.1    Suzuki, H.2    Hayashizaki, Y.3
  • 16
    • 0038699587 scopus 로고    scopus 로고
    • Global protein function prediction from protein-protein interaction networks
    • Vasquez, A., Flammini, A., Maritan, A., Vespignani, A. Global protein function prediction from protein-protein interaction networks. Nature Biotechnology 21, 697-700 (2003).
    • (2003) Nature Biotechnology , vol.21 , pp. 697-700
    • Vasquez, A.1    Flammini, A.2    Maritan, A.3    Vespignani, A.4
  • 17
    • 0035232248 scopus 로고    scopus 로고
    • Generating protein interaction maps from incomplete data: Application to fold assignment
    • Lappe, M., Park, J., Niggemann, O. & Holm, L. Generating protein interaction maps from incomplete data: application to fold assignment. Bioinformatics 17 (Suppl 1), S149-156 (2001).
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1
    • Lappe, M.1    Park, J.2    Niggemann, O.3    Holm, L.4
  • 18
    • 41349118690 scopus 로고    scopus 로고
    • Small-world view of the amino acids that play a key role in protein folding
    • published online 25 June 2002. DOI: 10.1103/PhysRevE.65.061910
    • Vendruscolo, M., Dokholyan, N.V., Paci, E. & Karplus, M. Small-world view of the amino acids that play a key role in protein folding. Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 65:061910, published online 25 June 2002. DOI: 10.1103/PhysRevE.65.061910
    • Phys. Rev. E Stat. Nonlin. Soft Matter Phys. , vol.65 , pp. 061910
    • Vendruscolo, M.1    Dokholyan, N.V.2    Paci, E.3    Karplus, M.4
  • 19
    • 0035836765 scopus 로고    scopus 로고
    • A comprehensive two-hybrid analysis to explore the yeast protein interactome
    • Ito, T. et al. A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl. Acad. Sci. USA 98, 4569-4574 (2001).
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 4569-4574
    • Ito, T.1
  • 20
    • 0034628508 scopus 로고    scopus 로고
    • A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    • Uetz, P. et al. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403, 623-627 (2000).
    • (2000) Nature , vol.403 , pp. 623-627
    • Uetz, P.1
  • 21
    • 0036580169 scopus 로고    scopus 로고
    • Protein interactions: Two methods for assessment of the reliability of high throughput observations
    • Deane, C.M., Salwinski, L., Xenarios, I. & Eisenberg, D. Protein interactions: two methods for assessment of the reliability of high throughput observations. Mol. Cell Proteomics 1, 349-356 (2002).
    • (2002) Mol. Cell Proteomics , vol.1 , pp. 349-356
    • Deane, C.M.1    Salwinski, L.2    Xenarios, I.3    Eisenberg, D.4
  • 22
    • 0037050026 scopus 로고    scopus 로고
    • Functional organization of the yeast proteome by systematic analysis of protein complexes
    • Gavin, A.C. et al. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415, 141-147 (2002).
    • (2002) Nature , vol.415 , pp. 141-147
    • Gavin, A.C.1
  • 23
    • 0037050004 scopus 로고    scopus 로고
    • Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
    • Ho, Y. et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415, 180-183 (2002).
    • (2002) Nature , vol.415 , pp. 180-183
    • Ho, Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.