Protein-directed DNA structure II. Raman spectroscopy of a leucine zipper bZIP complex

Biochemistry

Volumn 39, Issue 3, 2000, Pages 548-556

  Benevides, James M ^a   Li, Tiansheng ^d   Lu, Xiang Jun ^b   Srinivasan, A R ^b   Olson, Wilma K ^b   Weiss, Michael A ^c,e   Thomas Jr , George J ^a  

^a UNIVERSITY OF MISSOURI KANSAS CITY   (United States)

^b RUTGERS UNIVERSITY   (United States)

^c UNIVERSITY OF CHICAGO   (United States)

^d AMGEN INC   (United States)

^e CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

LEUCINE ZIPPER PROTEIN;

ARTICLE; BINDING SITE; CRYSTAL STRUCTURE; DNA CONFORMATION; DNA STRUCTURE; PRIORITY JOURNAL; PROTEIN STRUCTURE; RAMAN SPECTROMETRY; STRUCTURE ACTIVITY RELATION; X RAY ANALYSIS; YEAST;

BASE SEQUENCE; BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTORS; DNA; DNA-BINDING PROTEINS; FUNGAL PROTEINS; G-BOX BINDING FACTORS; LEUCINE ZIPPERS; NUCLEIC ACID CONFORMATION; OLIGODEOXYRIBONUCLEOTIDES; PROTEIN KINASES; PROTEIN STRUCTURE, SECONDARY; REPRESSOR PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SPECTRUM ANALYSIS, RAMAN; TRANSCRIPTION FACTORS; VIRAL PROTEINS;

EID: 0034711681     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi990053x     Document Type: Article

References (44)

1. Pabo, C. O., and Sauer, R. T. (1992) Annu. Rev. Biochem. 61, 1053-1095.
2. Kim, J. L., and Burley, S. K. (1994) Nat Struct. Biol. 1, 638-653.
3. Werner, M. H., Huth, J. R., Gronenborn, A. M., and Clore, G. M. (1995) Cell 81, 705-714.
4. Patel, L., Abate, C., and Curran, T. (1990) Nature 347, 572-575.
5. Ellenberger, T. E., Brandt, C. J., Struhl, K., and Harrison, S. C. (1992) Cell 71, 1223-1237.
6. Konig, P., and Richmond, T. J. (1993) J. Mol. Biol. 233, 139-154.
7. Keller, W., Konig, P., and Richmond, T. J. (1995) J. Mol. Biol. 254, 657-667.
8. Weiss, M. A., Ellenberger, T., Wobbe, C. R., Lee, J. P., Harrison, S. C., and Struhl, K. (1990) Nature 347, 575-578.
9. Kissinger, C. R., Liu, B., Martin-Blanco, E., and Kornberg, T. B. (1990) Cell 63, 579-590.
10. Beamer, L. J., and Pabo, C. O. (1992) J. Mol. Biol. 227, 177-196.
11. Otwinowski, Z., Schevitz, R. W., Zhang, R.-G., Lawson, C. L., Joachimiak, A., Marmorstein, R. Q., Luisi, B. F., and Sigler, P. B. (1988) Nature 335, 321-329.
12. Frederick, C. A., Grable, J., Melia, M., Samudzi, C., Jen-Jacobson, L., Wang, B.-C., Greene, P., Boyer, H. W., and Rosenberg, J. M. (1984) Nature 309, 327-331.
13. Rozenberg, J., Rabinovich, D., Frolow, F., Hedge, R. S., and Shakked, Z. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 15194-15199.
14. Nilges, M. (1996) Curr. Opin. Struct Biol. 6, 615-623.
15. Neidle, S. (1998) Nat. Struct. Biol. 5, 754-756.
16. Benevides, J. M., Weiss, M. A., and Thomas, G. J., Jr., (1991) Biochemistry 30, 4381-4388.
17. Benevides, J. M., Weiss, M. A., and Thomas, G. J., Jr., (1991) Biochemistry 30, 5955-5963.
18. Benevides, J. M., Weiss, M. A., and Thomas, G. J., Jr. (1994) J. Biol. Chem. 269, 10869-10878.
19. Benevides, J. M., Kukolj, G., Autexier, C., Aubrey, K. L., DuBow, M., and Thomas, G. J., Jr., (1994) Biochemistry 33, 10701-10710.
20. Benevides, J. M., Chan, G., Lu, X.-J., Olson, W. K., Weiss, M. A., and Thomas, G. J., Jr. (2000) Biochemists 39, 537-547.
21. Lamba, O. P., Becka, R., and Thomas, G. J., Jr. (1990) Biopolymers 29, 1465-1477.
22. Berman, H. M., Olson, W. K., Beveridge, D. L., Westbrook, J., Gelbin, A., Demeny, T., Hsieh, S.-H., Srinivasan, A. R., and Schneider, B. (1992) Biophys. J. 63, 751-759.
23. Gorin, A. A., Zhurkin, V. B., and Olson, W. K. (1995) J. Mol. Biol. 247, 34-48.
24. Oison, W. K., Gorin, A. A., Lu, X.-J., Hock, L. M., and Zhurkin, V. B. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 11163-11168.
25. O'Shea, E. K., Klemm, J. D., Kim, P. S., and Alber. T. (1991) Science 254, 539-544.
26. Evertsz, E. M., Thomas, G. A., and Peticolas, W. L. (1991) Biochemistry 30, 1149-1155.
27. Chen, M. C., and Lord, R. C. (1974) J. Am. Chem. Soc. 96, 4750-4752.
28. Krimm, S. (1987) in Biological Applications of Raman Spectroscopy (Spiro, T. G., Ed.) pp 1-45, Wiley, New York.
29. Overman, S. A., and Thomas, G. J., Jr. (1998) J. Roman Spectrosc. 29, 23-29.
30. Overman, S. A., and Thomas, G. J., Jr. (1999) Biochemistry 37, 5654-5665.
31. Weiss, M. A. (1990) Biochemistry 29, 8020-8024.
32. Thomas, G. J., Jr., and Tsuboi, M. (1993) Adv. Biophys. Chem. 3, 1-70.
33. Duguid, J. G., Bloomfield, V. A., Benevides, J. M., and Thomas, G. J., Jr. (1996) Biophys. J. 71, 3350-3360.
34. Erfurth, S. C., and Peticolas, W. L. (1975) Biopolvmers 14, 247-264.
35. Benevides, J. M., Stow, P. L., Ilag, L., Incardona, N. L., and Thomas, G. J., Jr. (1991) Biochemistry 30, 4855-4863.
36. Ansevin, A. T., and Brown, B. W. (1971) Biochemistry 10, 1133-1138.
37. Nishimura, Y., Tsuboi, M., Sato, T., and Akoi, K. (1986) J. Mol. Struct. 146, 123-153.
38. Shui, X., McFail-Isom, L., Hu, G. G., and Williams, L. D. (1998) Biochemistry 37, 8341-8355.
39. Dickerson, R. E., Bansal, M., Calladine, C. R., Diekmann, S., Hunter, W. N., Kennard, O., von Kitzing, E., Lavery, R., Nelson, H. C. M., Olson, W. K., Saenger, W., Shakked, Z., Sklenar, H., Soumpasis, D. M., Tung, C.-S., Wang, A. H.-J., and Zhurkin, V. B. (1989) J. Mol. Biol. 208, 787-791.
40. Hockings, S. C., Kahn, J. D., and Crothers, D. M. (1998) Proc. Natl. Acad. Sci. 95, 1410-1415.
41. Dickerson, R. E., and Chiu, T. K. (1998) Biopolymers 44, 361-404.
42. Thomas, G. J., Jr., and Agard, D. A. (1984) Biophvs. J. 46, 763-76.
43. Benevides, J. M., Terwilliger, T. C., Vohník, S., and Thomas, G. J., Jr. (1996) Biochemistry 35, 9603-9609.
44. Bernstein, F. C., Koetzle, T. F., Williams, G. J., Meyer, Jr., E. E., Brice, M. D., Rodgers, J. R., Kennard, O., Shimanouchi, T., and Tasumi, M. (1977) J. Mol. Biol. 112, 535-542.