메뉴 건너뛰기




Volumn 7, Issue 1, 2003, Pages 15-23

Normal coordinate structural decomposition of the heme distortions of hemoglobin in various quaternary states and bound to allosteric effectors

Author keywords

Allosteric effectors; Cooperativity; Hemoglobin; Normal coordinate structural decomposition

Indexed keywords

2,3 DIPHOSPHOGLYCERIC ACID; GLYCOSYLATED HEMOGLOBIN; HEME; HEME DERIVATIVE; HEMOGLOBIN A; HEMOGLOBIN A2; HEMOGLOBIN BETA CHAIN; PHYTIC ACID; PROTEIN SUBUNIT;

EID: 0345825851     PISSN: 13811991     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:MODI.0000006532.16981.e8     Document Type: Article
Times cited : (7)

References (45)
  • 1
    • 0018361151 scopus 로고
    • Hemoglobin: The structural changes related to ligand binding and its allosteric mechanism
    • Baldwin, J. and Chothia, C., Hemoglobin: The structural changes related to ligand binding and its allosteric mechanism, J. Mol. Biol., 129 (1979) 175-220.
    • (1979) J. Mol. Biol. , vol.129 , pp. 175-220
    • Baldwin, J.1    Chothia, C.2
  • 2
    • 0014958182 scopus 로고
    • Stereochemistry of cooperative effects in hemoglobin
    • Perutz, M. F., Stereochemistry of cooperative effects in hemoglobin, Nature, 228 (1970) 726-734.
    • (1970) Nature , vol.228 , pp. 726-734
    • Perutz, M.F.1
  • 3
    • 36949043245 scopus 로고
    • The Bohr effect and combination with organic phosphates
    • Perutz, M. F., The Bohr effect and combination with organic phosphates, Nature, 228 (1970) 734-739.
    • (1970) Nature , vol.228 , pp. 734-739
    • Perutz, M.F.1
  • 4
    • 78651189765 scopus 로고
    • On the nature of allosteric transitions: A plausible model
    • Monod, J., Wyman, J. and Changeux, J.-P., On the nature of allosteric transitions: a plausible model, J. Mol. Biol., 12 (1965) 88-118.
    • (1965) J. Mol. Biol. , vol.12 , pp. 88-118
    • Monod, J.1    Wyman, J.2    Changeux, J.-P.3
  • 5
    • 0031859481 scopus 로고    scopus 로고
    • The stereochemical mechanism of the cooperative effects in henoglobin revisited
    • Perutz, M. F., The stereochemical mechanism of the cooperative effects in henoglobin revisited, Annu. Rev. Biophys. Biomol. Struct., 27 (1998) 1-34.
    • (1998) Annu. Rev. Biophys. Biomol. Struct. , vol.27 , pp. 1-34
    • Perutz, M.F.1
  • 6
    • 0015515865 scopus 로고
    • X-ray diffraction study of binding of 2,3-diphosphoglycerate to human deoxyhaemoglobin
    • Arnone, A., X-ray diffraction study of binding of 2,3-diphosphoglycerate to human deoxyhaemoglobin, Nature, 237 (1972) 146.
    • (1972) Nature , vol.237 , pp. 146
    • Arnone, A.1
  • 8
    • 0037054871 scopus 로고    scopus 로고
    • Description of hemoglobin oxygenation under universal solution conditions by a global allostery model with a single adjustabte parameter
    • Imai, K., Tsuneshige, A. and T. Yonetani, Description of hemoglobin oxygenation under universal solution conditions by a global allostery model with a single adjustabte parameter, Biophys. Chem., 98 (2002) 79-91.
    • (2002) Biophys. Chem. , vol.98 , pp. 79-91
    • Imai, K.1    Tsuneshige, A.2    Yonetani, T.3
  • 9
    • 0037054844 scopus 로고    scopus 로고
    • Heterotropic effectors control the hemoglobin function by interacting with its T and R-states - A new view on the principle of allostery
    • Tsuneshige, A., Park, S. and T. Yonetani, Heterotropic effectors control the hemoglobin function by interacting with its T and R-states - a new view on the principle of allostery, Biophys. Chem., 98 (2002) 49-63.
    • (2002) Biophys. Chem. , vol.98 , pp. 49-63
    • Tsuneshige, A.1    Park, S.2    Yonetani, T.3
  • 10
    • 0001098626 scopus 로고
    • 15N substituted derivatives. II. A normal coordinate analysis
    • 15N substituted derivatives. II. A normal coordinate analysis, J. Chem. Phys., 69 (1978) 4526-4534.
    • (1978) J. Chem. Phys. , vol.69 , pp. 4526-4534
    • Abe, M.1    Kitagawa, T.2    Kyogoku, Y.3
  • 11
    • 0003096407 scopus 로고
    • Consistent porphyrin force field. 2. Nickel octaethylporphyrin skeletal and substituent mode assignments from nitrogen-15, meso-d4, and methylene-d16 Raman and infrared isotope shifts
    • Li, X.-Y., Czernuszewicz, R. S., Kincaid, J. R., Su, Y. O. and Spiro, T. G., Consistent porphyrin force field. 2. Nickel octaethylporphyrin skeletal and substituent mode assignments from nitrogen-15, meso-d4, and methylene-d16 Raman and infrared isotope shifts, J. Phys. Chem., 94 (1990) 47-61.
    • (1990) J. Phys. Chem. , vol.94 , pp. 47-61
    • Li, X.-Y.1    Czernuszewicz, R.S.2    Kincaid, J.R.3    Su, Y.O.4    Spiro, T.G.5
  • 12
    • 0000835279 scopus 로고    scopus 로고
    • Molecular Simulations and Normal-Coordinate Structural Analysis of Porphyrins and Heme Proteins
    • K. M. Kadish, K. M. Smith and R. Guilard (eds), Academic Press, New York
    • Shelnutt, J. A., Molecular Simulations and Normal-Coordinate Structural Analysis of Porphyrins and Heme Proteins, in K. M. Kadish, K. M. Smith and R. Guilard (eds), The Porphyrin Handbook: Vol 7: Theoretical and Physical Characterization, Academic Press, New York, 2000, pp. 167-223.
    • (2000) The Porphyrin Handbook: Vol 7: Theoretical and Physical Characterization , vol.7 , pp. 167-223
    • Shelnutt, J.A.1
  • 13
    • 0001884258 scopus 로고
    • The Resonance Raman Spectrosocopy of Metalloporphyrins and Heme Proteins
    • A. B. P. Lever and H. B. Gray (eds), Addison-Wesley, London
    • Spiro, T. G., The Resonance Raman Spectrosocopy of Metalloporphyrins and Heme Proteins, in A. B. P. Lever and H. B. Gray (eds), Iron Porphyrins, Part II, Addison-Wesley, London, 1983, pp. 89-166.
    • (1983) Iron Porphyrins, Part II , pp. 89-166
    • Spiro, T.G.1
  • 14
    • 0003275101 scopus 로고
    • An Electronic Interaction Model for Hemoglobin Cooperativity: Evidence from Resonance Raman Difference Spectroscopy
    • C. Ho (ed.), Macmillan, London
    • Rousseau, D. L., Shelnutt, J. A., Ondrias, M. R., Friedman, J. M., Henry, E. R. and Simon, S. R., An Electronic Interaction Model for Hemoglobin Cooperativity: Evidence from Resonance Raman Difference Spectroscopy, in C. Ho (ed.), Hemoglobin and Oxygen Binding, Macmillan, London, 1982, pp. 223-230.
    • (1982) Hemoglobin and Oxygen Binding , pp. 223-230
    • Rousseau, D.L.1    Shelnutt, J.A.2    Ondrias, M.R.3    Friedman, J.M.4    Henry, E.R.5    Simon, S.R.6
  • 15
    • 0024785517 scopus 로고
    • Allosteric linkage-induced distortions of the prosthetic group in haem proteins as derived by the theoretical interpretation of the depolarization ratio in resonance Raman scattering
    • Schweitzer-Stenner, R., Allosteric linkage-induced distortions of the prosthetic group in haem proteins as derived by the theoretical interpretation of the depolarization ratio in resonance Raman scattering, Q. Rev. Biophys., 22 (1989) 381-479.
    • (1989) Q. Rev. Biophys. , vol.22 , pp. 381-479
    • Schweitzer-Stenner, R.1
  • 16
    • 0020326878 scopus 로고
    • Ligation and quaternary structure induced changes in the heme pocket of hemoglobin: A transient resonance Raman study
    • Friedman, J. M., Stepnoski, R. A., Stavola, M., Ondrias, M. R. and Cone, R. L., Ligation and quaternary structure induced changes in the heme pocket of hemoglobin: a transient resonance Raman study, Biochemistry, 21 (1982) 2022-2028.
    • (1982) Biochemistry , vol.21 , pp. 2022-2028
    • Friedman, J.M.1    Stepnoski, R.A.2    Stavola, M.3    Ondrias, M.R.4    Cone, R.L.5
  • 17
    • 0028923070 scopus 로고
    • Structure and dynamics of transient species using time-resolved resonance Raman spectroscopy
    • Kincaid, J. R., Structure and dynamics of transient species using time-resolved resonance Raman spectroscopy, Methods Enzymol., 246 (1995) 461-501.
    • (1995) Methods Enzymol. , vol.246 , pp. 461-501
    • Kincaid, J.R.1
  • 18
    • 0028799067 scopus 로고
    • Hemoglobin allostery: Resonance Raman spectroscopy of kinetic intermediates
    • Jayaraman, V., Rodgers, K. R., Mukerji, I. and Spiro, T. G., Hemoglobin allostery: Resonance Raman spectroscopy of kinetic intermediates, Science, 269 (1995) 1843-1848.
    • (1995) Science , vol.269 , pp. 1843-1848
    • Jayaraman, V.1    Rodgers, K.R.2    Mukerji, I.3    Spiro, T.G.4
  • 19
    • 0026490651 scopus 로고
    • Investigation of higher order structures of proteins by ultraviolet resonance Raman spectroscopy
    • Kitagawa, T., Investigation of higher order structures of proteins by ultraviolet resonance Raman spectroscopy, Prog. Biophys. Mol. Biol., 58 (1992) 1-18.
    • (1992) Prog. Biophys. Mol. Biol. , vol.58 , pp. 1-18
    • Kitagawa, T.1
  • 20
    • 0037031126 scopus 로고    scopus 로고
    • 2 subunit contacts between ligand binding to the α and β subunits of hemoglobin A: UV resonance Raman analysis using Ni-Fe hybrid hemoglobin
    • 2 subunit contacts between ligand binding to the α and β subunits of hemoglobin A: UV resonance Raman analysis using Ni-Fe hybrid hemoglobin, Biochemistry, 41 (2002) 10010-10020.
    • (2002) Biochemistry , vol.41 , pp. 10010-10020
    • Nagatomo, S.1    Nagai, M.2    Shibayama, N.3    Kitagawa, T.4
  • 23
    • 0037379807 scopus 로고    scopus 로고
    • The endogenous calcium ions of horseradish peroxidase C are required to maintain the functional nonplanarity of the heme
    • Laberge, M., Huang, Q., Schweitzer-Stenner, R. and Fidy, J., The endogenous calcium ions of horseradish peroxidase C are required to maintain the functional nonplanarity of the heme, Biophys. J., 84 (2003) 2542-2552.
    • (2003) Biophys. J. , vol.84 , pp. 2542-2552
    • Laberge, M.1    Huang, Q.2    Schweitzer-Stenner, R.3    Fidy, J.4
  • 24
    • 0031078856 scopus 로고    scopus 로고
    • Structural characterization of synthetic and protein-bound porphyrins in terms of the lowest-frequency normal coordinates of the macrocycle
    • Jentzen, W., Song, X.-Z. and Shelnutt, J. A., Structural characterization of synthetic and protein-bound porphyrins in terms of the lowest-frequency normal coordinates of the macrocycle, J. Phys. Chem. B, 101 (1997) 1684-1699.
    • (1997) J. Phys. Chem. B , vol.101 , pp. 1684-1699
    • Jentzen, W.1    Song, X.-Z.2    Shelnutt, J.A.3
  • 25
    • 0026620795 scopus 로고
    • High resolution crystal structures and comparisons of T-state deoxyhaemoglobin and two liganded T-state haemoglobins: T(alpha-oxy)haemoglobin and T(met)haemoglobin
    • Liddington, R., Derewenda, Z., Dodson, E., Hubbard, R. and Dodson, G., High resolution crystal structures and comparisons of T-state deoxyhaemoglobin and two liganded T-state haemoglobins: T(alpha-oxy)haemoglobin and T(met)haemoglobin, J. Mol. Biol., 228 (1992) 551-579.
    • (1992) J. Mol. Biol. , vol.228 , pp. 551-579
    • Liddington, R.1    Derewenda, Z.2    Dodson, E.3    Hubbard, R.4    Dodson, G.5
  • 27
    • 0021683974 scopus 로고
    • The crystal structure of human deoxyhaemoglobin at 1.74 A resolution
    • Fermi, G., Perutz, M. F., Shaanan, B. and Fourme, The crystal structure of human deoxyhaemoglobin at 1.74 A resolution, J. Mol. Biol., 175 (1984) 159-174.
    • (1984) J. Mol. Biol. , vol.175 , pp. 159-174
    • Fermi, G.1    Perutz, M.F.2    Shaanan, B.3    Fourme4
  • 28
    • 0021027685 scopus 로고
    • Structure of human oxyhaemoglobin at 2.1 resolution
    • Shaanan, B., Structure of human oxyhaemoglobin at 2.1 resolution, J. Mol. Biol., 171 (1983) 31-59.
    • (1983) J. Mol. Biol. , vol.171 , pp. 31-59
    • Shaanan, B.1
  • 29
    • 0026795182 scopus 로고
    • A third quaternary structure of human hemoglobin A at 1.7-Å resolution
    • Silva, M. M., Rogers, P. H. and Arnone, A., A third quaternary structure of human hemoglobin A at 1.7-Å resolution, J. Biol. Chem., 267 (1992) 17248-17256.
    • (1992) J. Biol. Chem. , vol.267 , pp. 17248-17256
    • Silva, M.M.1    Rogers, P.H.2    Arnone, A.3
  • 30
    • 0027381305 scopus 로고
    • Human deoxyhaemoglobin-2,3 diphosphoglycerate complex low-salt structure at 2.5 Å resolution
    • Richard, V., Dodson, G. G. and Mauguen, Y., Human deoxyhaemoglobin-2,3 diphosphoglycerate complex low-salt structure at 2.5 Å resolution, J. Mol. Biol., 233 (1993) 270-274.
    • (1993) J. Mol. Biol. , vol.233 , pp. 270-274
    • Richard, V.1    Dodson, G.G.2    Mauguen, Y.3
  • 31
    • 54749107046 scopus 로고
    • Refinement of a partially oxygenated T-state human haemoglobin at 1,5 Å resolution
    • Waller, D. A. and Liddington, R. C., Refinement of a partially oxygenated T-state human haemoglobin at 1,5 Å resolution, Acta Crystallogr. B 46 (1990) 409-418.
    • (1990) Acta Crystallogr. B , vol.46 , pp. 409-418
    • Waller, D.A.1    Liddington, R.C.2
  • 32
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • Laskowski, R. A., MacArthur, M. W., Moss, D. S. and Thornton, J. M., PROCHECK: A program to check the stereochemical quality of protein structures, J. Appl. Cryst., 26 (1993) 283-291.
    • (1993) J. Appl. Cryst. , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 33
    • 0037214579 scopus 로고    scopus 로고
    • The role of hydration on the mechanism of allosteric regulation: In situ measurements of the oxygen-linked kinetics of water binding to hemoglobin
    • Salvay, A. G., Grigera, J. R. and Colombo, M. F., The role of hydration on the mechanism of allosteric regulation: in situ measurements of the oxygen-linked kinetics of water binding to hemoglobin, Biophys. J., 84 (2003) 564-570.
    • (2003) Biophys. J. , vol.84 , pp. 564-570
    • Salvay, A.G.1    Grigera, J.R.2    Colombo, M.F.3
  • 34
    • 0034701042 scopus 로고    scopus 로고
    • Computational methodology for estimating changes in free energies of biomolecular association upon mutation. The importance of bound water in dimer-tetramer assembly for β 37 mutant hemoglobins
    • Burnett, J., Kellogg, G. E. and Abraham, D. J., Computational methodology for estimating changes in free energies of biomolecular association upon mutation. The importance of bound water in dimer-tetramer assembly for β 37 mutant hemoglobins, Biochemistry, 39 (2000) 1622-1633.
    • (2000) Biochemistry , vol.39 , pp. 1622-1633
    • Burnett, J.1    Kellogg, G.E.2    Abraham, D.J.3
  • 35
    • 0037171146 scopus 로고    scopus 로고
    • The effects of osmotic and hydrostatic pressures on macromolecular systems
    • Kornblatt, J. A. and Kornblatt, J., The effects of osmotic and hydrostatic pressures on macromolecular systems, Biochim. Biophys. Acta, 1595 (2002) 30-47.
    • (2002) Biochim. Biophys. Acta , vol.1595 , pp. 30-47
    • Kornblatt, J.A.1    Kornblatt, J.2
  • 36
    • 0031904598 scopus 로고    scopus 로고
    • Conservation of the Conformation of the Porphyrin Macrocycle in Heme Proteins
    • Jentzen, W., Ma, J.-G. and Shelnutt, J. A., Conservation of the Conformation of the Porphyrin Macrocycle in Heme Proteins, Biophys. J., 74 (1998) 753-763.
    • (1998) Biophys. J. , vol.74 , pp. 753-763
    • Jentzen, W.1    Ma, J.-G.2    Shelnutt, J.A.3
  • 37
    • 0026695805 scopus 로고
    • High-resolution x-ray study of deoxyhemoglobin Rothschild 37. beta. Trp → Arg: A mutation that creates an intersubunit chloride-binding site
    • Kavanaugh, J. S., Rogers, P. H., Case, D. A. and Arnone, A., High- resolution x-ray study of deoxyhemoglobin Rothschild 37. beta. Trp → Arg: a mutation that creates an intersubunit chloride-binding site, Biochemistry, 31 (1992) 4111-4121.
    • (1992) Biochemistry , vol.31 , pp. 4111-4121
    • Kavanaugh, J.S.1    Rogers, P.H.2    Case, D.A.3    Arnone, A.4
  • 38
    • 0034045353 scopus 로고    scopus 로고
    • Resonance Raman studies of heme structural differences in subunits of deoxy hemoglobin
    • Podstawka, E., Rajani, C., Kincaid, J. and Proniewicz, L. M., Resonance Raman studies of heme structural differences in subunits of deoxy hemoglobin, Biopolymers, 57 (2000) 201-207.
    • (2000) Biopolymers , vol.57 , pp. 201-207
    • Podstawka, E.1    Rajani, C.2    Kincaid, J.3    Proniewicz, L.M.4
  • 39
    • 0000822936 scopus 로고    scopus 로고
    • Structural evolution of the heme group during the allosteric transition in hemoglobin: Insights from resonance raman spectra of isotopically labeled heme
    • Jayaraman, V. and Spiro, T. G., Structural evolution of the heme group during the allosteric transition in hemoglobin: Insights from resonance raman spectra of isotopically labeled heme, Biospectroscopy, 2 (1996) 311-316.
    • (1996) Biospectroscopy , vol.2 , pp. 311-316
    • Jayaraman, V.1    Spiro, T.G.2
  • 40
    • 0035955173 scopus 로고    scopus 로고
    • Resonance Raman studies of selectivelly labelled hemoglobin tetramers
    • Podstawka, E., Kincaid, J. and Proniewicz, L. M., Resonance Raman studies of selectivelly labelled hemoglobin tetramers, J. Mol. Struct., 596 (2001) 157-162.
    • (2001) J. Mol. Struct. , vol.596 , pp. 157-162
    • Podstawka, E.1    Kincaid, J.2    Proniewicz, L.M.3
  • 41
    • 0027988868 scopus 로고
    • The T → R transformation in hemoglobin: A reevaluation
    • Srinivasan, R. and Rose, G. D., The T → R transformation in hemoglobin: a reevaluation, Proc. Nat. Acad. Sci. U.S.A., 91 (1994) 11113-11117.
    • (1994) Proc. Nat. Acad. Sci. U.S.A. , vol.91 , pp. 11113-11117
    • Srinivasan, R.1    Rose, G.D.2
  • 42
    • 0033214516 scopus 로고    scopus 로고
    • What is the true structure of liganded hemoglobin?
    • Tame, J. R. H., What is the true structure of liganded hemoglobin?, TIBS, 24 (1999) 372-377.
    • (1999) TIBS , vol.24 , pp. 372-377
    • Tame, J.R.H.1
  • 43
    • 0032584670 scopus 로고    scopus 로고
    • Normal and abnormal protein subunit interactions in hemoglobins
    • Manning, J. M., Dumoulin, A., Li, X., and Manning, L. R., Normal and abnormal protein subunit interactions in hemoglobins, J. Biol. Chem., 31 (1999) 19359-19362.
    • (1999) J. Biol. Chem. , vol.31 , pp. 19359-19362
    • Manning, J.M.1    Dumoulin, A.2    Li, X.3    Manning, L.R.4
  • 44
    • 0020626848 scopus 로고
    • Selective carboxymethylation of the alpha-amino groups of hemoglobin. Effect on functional properties
    • DiDonato, A., Fantl, W. J., Acharya, A. S. and Manning, J. M., Selective carboxymethylation of the alpha-amino groups of hemoglobin. Effect on functional properties, J. Biol. Chem., 258 (1983) 11890-11895.
    • (1983) J. Biol. Chem. , vol.258 , pp. 11890-11895
    • DiDonato, A.1    Fantl, W.J.2    Acharya, A.S.3    Manning, J.M.4
  • 45
    • 0028341273 scopus 로고
    • X-ray crystallography of partially liganded structures
    • Liddington, R., X-ray crystallography of partially liganded structures, Methods Enzymol., 232 (1994) 15-26.
    • (1994) Methods Enzymol. , vol.232 , pp. 15-26
    • Liddington, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.