Amylose chain behavior in an interacting context. III. Complete occupancy of the AMY2 barley α-amylase cleft and comparison with biochemical data

Biopolymers

Volumn 50, Issue 7, 1999, Pages 751-762

  Andre G ^a   Buleon A ^a   Haser, R ^b   Tran, V ^a  

^a CEMAGREF   (France)

^b INSTITUT DE BIOLOGIE ET CHIMIE DES PROTÉINES   (France)

Author keywords

Amylose chain conformation; Barley amylase catalysis; Maltodecaose docking; Molecular modeling

Indexed keywords

BINDING ENERGY; BIOCHEMISTRY; CATALYSIS; CONFORMATIONS; DEFORMATION; MOLECULAR STRUCTURE; STARCH;

AMYLOSE;

ENZYMES;

AMYLASE; AMYLOSE; ENZYME; GLUCOSE; MALTOTRIOSE; PENTASACCHARIDE;

ARTICLE; CATALYSIS; CONFORMATION; ENERGY; MOLECULAR MODEL; NONHUMAN;

EID: 0345580183     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0282(199912)50:7<751::AID-BIP8>3.0.CO;2-5     Document Type: Article

References (58)

1. Matsuura, Y.; Kusunoki, M.; Harada, W.; Kakudo, M. J Biochem 1984, 95, 697-702.
2. Swift, H. J.; Brady, L.; Derewenda, Z. S.; Dodson, E. J.; Dodson, G. G.; Turkenburg, J. P.; Wilkinson, A. J. Acta Cryst 1991, B47, 535-544.
3. Brzozowski, A. M.; Davies, G. J. Biochemistry 1997, 36, 10837-10845.
4. Buisson, G.; Duée, E.; Haser, R.; Payan, F. EMBO J 1987, 6, 3909-3916.
5. Qian, M.; Haser, R.; Payan, F. J Mol Biol 1993, 231, 785-799.
6. Qian, M.; Haser, R.; Buisson, G.; Duée, E.; Payan, F. Biochemistry 1994, 33, 6284-6289.
7. Larson, S. B.; Greenwood, A.; Cascio, D.; Day, J.; McPherson, A. J Mol Biol 1994, 235, 1560-1584.
8. Wiegand, G.; Epp, O.; Huber, R. J Mol Biol 1995, 247, 99-110.
9. Boel, E.; Brady, L.; Brzozowski, A. M.; Derewenda, Z.; Dodson, G. G.; Jensen, V. J.; Petersen, S. B.; Swift, H.; Thim, L.; Woldike, H. F. Biochemistry 1990, 29, 6244-6249.
10. Brady, R. L.; Brzozowski, A. M.; Derewenda, Z. S.; Dodson, E. J.; Dodson, G. G. Acta Cryst 1991, B47, 527-535.
11. Ramasubbu, N.; Bhandary, K. K.; Scannapieco, F. A.; Levine, M. J. Proteins Struct Funct Genet 1991, 11, 230-232.
12. Ramasubbu, N.; Paloth, V.; Luo, Y.; Brayer, G. D.; Levine, M. J. Acta Crystallogr 1996, D52, 435-446.
13. Kadziola, A.; Abe, J.; Svensson, B.; Haser, R. J Mol Biol 1994, 239, 104-121.
14. Kadziola, A.; Søgaard, M.; Svensson, B.; Haser, R. J Mol Biol 1998, 278, 205-217.
15. Vallée, F.; Kadziola, A.; Bourne, Y.; Juy, M.; Rodenburg, K.W.; Svensson, B.; Haser, R. Structure 1998, 6, 649-659.
16. Machius, M.; Wiegand, G.; Huber, R. J Mol Biol 1995, 246, 545-559.
17. Brayer, G. D.; Luo, Y.; Withers, S. G. Protein Sci 1995, 4, 1730-1742.
18. Aghajari, N.; Feller, G.; Gerday, C.; Haser, R. Protein Sci 1996, 5, 2128-2129.
19. Davies, G. J.; Henrissat, B. Structure 1995, 3, 853-859.
20. Svensson, B. Plant Mol Biol 1994, 25, 141-157.
21. MacGregor, E. A. Foods Hydrocolloids 1987, 1, 407-411.
22. MacGregor, A.W. Cereal Chem 1978, 55, 754-765.
23. Svensson, B.; Mundy, J.; Gibson, R. M.; Svendsen, I. Carlsberg Res Commun 1985, 50, 15-22.
24. MacGregor, A. W. CRC Crit Rev Biotech 1987, 5, 117-128.
25. MacGregor, A. W.; Balance, D. L. Cereal Chem 1980, 57, 397-405.
26. MacGregor, A. W.; Morgan, J. E. Cereal Foods World 1986, 31, 688-693.
27. MacGregor, E. A. J Protein Chem 1988, 7, 399-415.
28. MacGregor, E. A.; MacGregor, A. W. Carbohydr Res 1985, 142, 223-236.
29. MacGregor, A. W.; Morgan, J. E.; MacGregor, E. A. Carbohydr Res 1992, 227, 301-313.
30. MacGregor, E. A.; MacGregor, A. W.; Macri, L. J.; Morgan, J. E. Carbohydr Res 1994, 257, 249-268.
31. Buléon, A.; Colonna, P.; Planchot, V.; Ball, S. Int J Biol Macromol 1998, 23, 85-112.
32. Imberty, A.; Buléon, A.; Tran, V.; Perez, S. Starch/ Stärcke 1991, 43, 375-384.
33. Ha, S. N.; Madsen, L. J.; Brady, J. W. Biopolymers 1988, 27, 1927-1952.
34. Tran, V.; Buléon, A.; Imberty, A.; Pérez, S. Biopolymers 1989, 28, 679-690.
35. André, G.; Buléon, A.; Vallée, F.; Juy, M.; Haser, R.; Tran V. Biopolymers 1996, 39, 737-751.
36. Cremer, D.; Pople, J. A. J Am Chem Soc 1947, 97, 1354-1358.
37. André, G.; Buléon, A.; Juy, M.; Aghajari, N.; Haser, R.; Tran V. Biopolymers 1999, 49, 107-119.
38. Colonna, P.; Leloup, V.; Buléon, A. Eur J Clin Nut 1992, 46, 17-32.
39. Koshland, D. E., Jr. Biol Rev Camb Phil Soc 1953, 28, 416-436.
40. Sinnott, M. L. Chem Rev 1990, 90, 1171-1202, and references therein.
41. Hiromi, K. Biochem Biophys Res Commun 1970, 40, 1-6.
42. Hiromi , K.; Nitta, Y.; Numata, C.; Ono, S. Biochim Biophys Acta 1973, 302, 362-375.
43. Thoma, J. A.; Brothers, C.; Spradlin, J. Biochemistry 1970, 9, 1768-1775.
44. Thoma, J. A.; Rao, G. V. K.; Brothers, C.; Spradlin, J.; Li, L. H. J Biol Chem 1971, 246, 5621-5635.
45. Suganuma, T.; Matsuno, R.; Ohnishi, M.; Hiromi, K. J Biochem 1978, 84, 293-316.
46. Seigner, C.; Prodanov, E.; Marchis-Mouren, G. Eur J Biochem 1985, 148, 161-168.
47. Kondo, H.; Nakatani, H.; Hiromi, K. Carbohydr Res 1990, 206, 161-166.
48. Ajandouz, E. H.; Marchis-Mouren, G. J. Carbohydr Res 1995, 268, 267-277.
49. Kandra, L.; Gyemant, G.; Farkas, E.; Liptak, A. Carbohydr Res 1997, 298, 237-242.
50. Ajandouz, E. H.; Abe, J.; Svensson, B.; Marchis-Mouren, G. Biochim Biophys Acta 1992, 1159, 193-202.
51. Suganuma, T.; Ohnishi, M.; Hiromi, K.; Nagahama, T. Carbohydr Res 1996, 282, 171-180.
52. Suganuma, T.; Maeda, Y.; Kitahara, K.; Nagahama, T. Carbohydr Res 1997, 303, 219-227.
53. Davies, G. J.; Wilson, K. S.; Henrissat, B. Biochem J 1997, 321, 557-559.
54. Quiocho, F. A. Ann Rev Biochem 1986, 55, 287-315.
55. Quiocho, F. A. Pure Appl Chem 1989, 61, 1293-1306.
56. Vyas, N. K. Curr Opin Struct Biol 1991, 1, 732-740.
57. Gibson, R. M.; Svensson B. Carlsberg Res Commun 1986, 51, 295-308.
58. Gibson, R. M.; Svensson, B. Carlsberg Res Commun 1987, 52, 373-379.