Proteorhodopsin in living color: Diversity of spectral properties within living bacterial cells

Biochimica et Biophysica Acta - Biomembranes

Volumn 1618, Issue 1, 2003, Pages 25-32

  Kelemen, Bradley R ^a   Du, Mai ^a   Jensen, Rasmus B ^a  

^a GENENCOR INTERNATIONAL INC   (United States)

Author keywords

Escherichia coli; Halophilic archaebacteria; Proteorhodopsin

Indexed keywords

GLYCINE; LEUCINE; RHODOPSIN;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; BACTERIAL CELL; COLOR; CONTROLLED STUDY; ESCHERICHIA COLI; NONHUMAN; PH; PRIORITY JOURNAL; PROTEIN PURIFICATION; PROTON TRANSPORT; SOLUBILIZATION; SPECTRAL SENSITIVITY; SPECTROSCOPY;

ARCHAEA; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0344845205     PISSN: 00052736     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbamem.2003.10.002     Document Type: Article

References (28)

1. Beja O., Aravind L., Koonin E.V., Suzuki M.T., Hadd A., Nguyen L.P., Jovanovich S.B., Gates C.M., Feldman R.A., Spudich J.L., Spudich E.N., DeLong E.F. Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science. 289:2000;1902-1906.
2. Wise K.J., Gillespie N.B., Stuart J.A., Krebs M.P., Birge R.R. Optimization of bacteriorhodopsin for bioelectronic devices. Trends Biotechnol. 20:2002;387-394.
3. Min J., Choi H.G., Oh B.K., Lee W.H., Paek S.H., Choi J.W. Visual information processing using bacteriorhodopsin-based complex LB films. Biosens. Bioelectron. 16:2001;917-923.
4. Hampp N. Bacteriorhodopsin as a photochromic retinal protein for optical memories. Chem. Rev. 100:2000;1755-1776.
5. Hampp N.A. Bacteriorhodopsin: mutating a biomaterial into an optoelectronic material. Appl. Microbiol. Biotechnol. 53:2000;633-639.
6. Beja O., Spudich E.N., Spudich J.L., Leclerc M., DeLong E.F. Proteorhodopsin phototrophy in the ocean. Nature. 411:2001;786-789.
7. Man D., Wang W., Sabehi G., Aravind L., Post A.F., Massana R., Spudich E.N., Spudich J.L., Beja O. Diversification and spectral tuning in marine proteorhodopsins. EMBO J. 22:2003;1725-1731.
8. Dioumaev A.K., Brown L.S., Shih J., Spudich E.N., Spudich J.L., Lanyi J.K. Proton transfers in the photochemical reaction cycle of proteorhodopsin. Biochemistry. 41:2002;5348-5358.
9. Krebs R.A., Alexiev U., Partha R., DeVita A., Braiman M.S. Detection of fast light-activated H+ release and M intermediate formation from proteorhodopsin. BMC Physiol. 2:2002;5.
10. Friedrich T., Geibel S., Kalmbach R., Chizhov I., Ataka K., Heberle J., Engelhard M., Bamberg E. Proteorhodopsin is a light-driven proton pump with variable vectoriality. J. Mol. Biol. 321:2002;821-838.
11. Varo G., Brown L.S., Lakatos M., Lanyi J.K. Characterization of the photochemical reaction cycle of proteorhodopsin. Biophys. J. 84:2003;1202-1207.
12. Dioumaev A.K., Wang J.M., Bálint Z., Váró G., Lanyi J.K. Proton transport by proteorhodopsin requires that the retinal Schiff base counterion Asp-97 be anionic. Biochemistry. 42:2003;6582-6587.
13. Wang W.W., Sineshchekov O.A., Spudich E.N., Spudich J.L. Spectroscopic and photochemical characterization of a deep ocean proteorhodopsin. J. Biol. Chem. 278:2003;33985-33991.
14. Lakatos M., Lanyi J.K., Szakacs J., Varo G. The photochemical reaction cycle of proteorhodopsin at low pH. Biophys. J. 84:2003;3252-3256.
15. Krebs R.A., Dunmire D., Partha R., Braiman M.S. Resonance Raman characterization of proteorhodopsin's chromophore environment. J. Phys. Chem., B. 107:2003;7877-7883.
16. Mowery P.C., Lozier R.H., Chae Q., Tseng Y.W., Taylor M., Stoeckenius W. Effect of acid pH on the absorption spectra and photoreactions of bacteriorhodopsin. Biochemistry. 18:1979;4100-4107.
17. Balashov S.P., Imasheva E.S., Govindjee R., Ebrey T.G. Titration of aspartate-85 in bacteriorhodopsin: what it says about chromophore isomerization and proton release. Biophys. J. 70:1996;473-481.
18. Domian I.J., Quon K.C., Shapiro L. Cell type-specific phosphorylation and proteolysis of a transcriptional regulator controls the G1-to-S transition in a bacterial cell cycle. Cell. 90:1997;415-424.
19. Grisshammer R., Tate C.G. Overexpression of integral membrane proteins for structural studies. Q. Rev. Biophys. 28:1995;315-422.
20. Henderson R. The purple membrane from Halobacterium halobium. Annu. Rev. Biophys. Bioeng. 6:1977;87-109.
21. Dunn R.J., Hackett N.R., McCoy J.M., Chao B.H., Kimura K., Khorana H.G. Structure-function studies on bacteriorhodopsin: I. Expression of the bacterio-opsin gene in Escherichia coli. J. Biol. Chem. 262:1987;9246-9254.
22. Hohenfeld I.P., Wegener A.A., Engelhard M. Purification of histidine tagged bacteriorhodopsin, pharaonis halorhodopsin and pharaonis sensory rhodopsin II functionally expressed in Escherichia coli. FEBS Lett. 442:1999;198-202.
23. Mileykovskaya E., Dowhan W. Visualization of phospholipid domains in Escherichia coli by using the cardiolipin-specific fluorescent dye 10-N-nonyl acridine orange. J. Bacteriol. 182:2000;1172-1175.
24. Koppelman C.M., Den Blaauwen T., Duursma M.C., Heeren R.M., Nanninga N. Escherichia coli minicell membranes are enriched in cardiolipin. J. Bacteriol. 183:2001;6144-6147.
25. Neugebauer D.C., Zingsheim H.P., Oesterhelt D. Biogenesis of purple membrane in halobacteria. Methods Enzymol. 97:1983;218-226.
26. Isenbarger T.A., Krebs M.P. Role of helix-helix interactions in assembly of the bacteriorhodopsin lattice. Biochemistry. 38:1999;9023-9030.
27. Martinez L.C., Turner G.J. High-throughput screening of bacteriorhodopsin mutants in whole cell pastes. Biochim. Biophys. Acta. 1564:2002;91-98.
28. Clayton T., Byrne R.H. Spectrophotometric seawater pH measurements: total hydrogen ion concentration scale calibration of m-cresol purple and at-sea results. Deep-Sea Res. 40:1993;2115-2129.