Differentiation and species identification of yeasts using PCR

International Journal of Systematic Bacteriology

Volumn 48, Issue 1, 1998, Pages 279-286

  De Barros Lopes, Miguel ^a,b   Soden, Alison ^a   Martens, Anna L ^c   Henschke, Paul A ^a,b   Langridge, Peter ^b  

^a AUSTRALIAN WINE RESEARCH INSTITUTE   (Australia)

^b Adelaide Laboratory   (Australia)

^c Petaluma Pty Ltd   (Australia)

Author keywords

Identification; PCR; Yeasts

Indexed keywords

FUNGAL DNA; OLIGONUCLEOTIDE;

ARTICLE; CONTROLLED STUDY; DNA FINGERPRINTING; DNA POLYMORPHISM; ENDOMYCETALES; NONHUMAN; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SACCHAROMYCES; SPECIES DIFFERENTIATION; YEAST;

SACCHAROMYCES; SACCHAROMYCETALES;

EID: 0344542709     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-48-1-279     Document Type: Article

References (34)

1. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A. & Struhl, K. (1994). Current Protocols in Molecular Biology. New York: Wiley.
2. Barnett, J. A. (1992). The taxonomy of the genus Saccharomyces Meyen ex Reess: a short review for non-taxonomists. Yeast 8, 1-23.
3. Barnett, J. A., Payne, R. W. & Yarrow, D. (1990). Yeasts: Characteristics and Identification, 2nd edn. Cambridge: Cambridge University Press.
4. Boekhout, T. & Kurtzman, C. P. (1996). Principles and methods used in yeast classification, and an overview of currently accepted yeast genera. In Nonconventional Yeasts in Biotechnology, pp. 1-81. Edited by K. Wolf. Berlin Heidelberg: Springer.
5. Boekhout, T., Kurtzman, C. P., O'Donnell, K. & Smith, M. T. (1994). Phylogeny of the yeast genera Hanseniaspora (anamorph Kloeckera), Dekkera (anamorph Brettanomyces), and Eeniella as inferred from partial 26S ribosomal DNA nucleotide sequences. Int J Syst Bacteriol 44, 781-786.
6. Cardinali, G. & Martini, A. (1994). Electrophoretic karyotypes of authentic strains of the sensu stricto group of the genus Saccharomyces. Int J Syst Bacteriol 44, 791-797.
7. de Barros Lopes, M. A., Soden, A., Henschke, P. A. & Langridge, P. (1996). PCR differentiation of commercial yeast strains using intron splice site primers. Appl Environ Microbiol 62, 4514-4520.
8. Dobzhansky, T. (1937). Genetics and the origin of species. In Columbia Biological Series, pp. 364. Edited by L. C. Dunn. New York : Columbia University Press.
9. Fleet, G. H., Lafon-Lafourcade, S. & Ribéreau-Gayon, P. (1984). Evolution of yeasts and lactic acid bacteria during fermentation and storage of Bordeaux wines. Appl Environ Microbiol 48, 1034-1038.
10. Guillàmón, J. M., Barrio, E., Huerta, T. & Querol, A. (1994). Rapid characterization of four species of the Saccharomyces sensu stricto complex according to mitochondrial DNA patterns. Int J Syst Bacteriol 44, 708-714.
11. Heard, G. M. (1988). Occurrence and growth of yeasts during the fermentation of Australian wines. PhD thesis, The University of New South Wales.
12. Hoeben, P. & Clark-Walker, G. D. (1986). An approach to yeast classification by mapping mitochondrial DNA from Dekkera/ Brettanomyces and Eeniella genera. Curr Genet 10, 371-379.
13. Hoeben, P., Weiller, G. & Clark-Walker, G. D. (1993). Larger rearranged mitochondrial genomes in Dekkera/Brettanomyces yeasts are more closely related than smaller genomes with a conserved gene order. J Mol Evol 36, 263-269.
14. Jacob, M. & Gallinaro, H. (1989). The 5′ splice site: phylogenetic evolution and variable geometry of association with U1RNA. Nucleic Acids Res 17, 2159-2180.
15. Kreger-van Rij, N. (1984). The Yeasts, a Taxonomic Study, 3rd edn. Amsterdam: Elsevier Biomedical Press.
16. Kurtzman, C. P. (1992). rRNA sequence comparisons for assessing phylogenetic relationships among yeasts. Int J Syst Bacteriol 42, 1-6.
17. Kurtzman, C. P., Smiley, M. J. & Johnson, C. J. (1980). Emendation of the genus Issatchenkia Kudriavzev and comparison of species by deoxyribonucleic acid reassociation, mating reaction, and ascospore ultrastructure. Int J Syst Bacteriol 30, 503-513.
18. Lewicka, K., Mallie, M. & Bastide, J.-M. (1995). Genetic variability in the Saccharomyces sensu stricto complex revealed by multi-locus enzyme electrophoresis. Int J Syst Bacteriol 45, 538-543.
19. Naumov, G. I. (1987). Genetic basis for classification and identification of the ascomycetous yeasts. Stud Mycol 30, 469-475.
20. Naumov, G. I., Naumova, E. S., Lantto, R. A., Louis, E. J. & Korhola, M. (1992). Genetic homology between Saccharomyces cerevisiae and its sibling species S. paradoxus and S. bayanus: electrophoretic karyotypes. Yeast 8, 599-612.
21. Noronha-da-Costa, P., Rodrigues, C., Spencer-Martins, I. & Loureiro, V. (1996). Fatty acid patterns of film-forming yeasts and new evidence for the heterogeneity of Pichia membranifaciens. Lett Appl Microbiol 23, 79-84.
22. Palumbi, S. R. & Baker, C. S. (1994). Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales. Mol Biol Evol 11, 426-435.
23. Petering, J., Langridge, P. & Henschke, P. (1990). Identification of yeast strains by molecular biology techniques. In Ninth International Oenological Symposium, Cascais, Portugal, pp. 178-199. Breisach, Germany: International Association for Modern Winery Technology and Management.
24. Peterson, S. W. & Kurtzman, C. P. (1991). Ribosomal RNA sequence divergence among sibling species of yeasts. Syst Appl Microbiol 14, 124-129.
25. Price, C. W., Fuson, G. B. & Phaff, H. J. (1978). Genome comparison in yeast systematics: delimitation of species within the genera Schwanniomyces, Saccharomyces, Debaryomyces, and Pichia. Microbiol Rev 42, 161-193.
26. Scheda, R. & Yarrow, D. (1966). The instability of physiological properties used as criteria in the taxonomy of yeasts. Archiv Mikrobiol 55, 209-225.
27. Swofford, D. L. (1993). PAUP: phylogenetic analysis using parsimony, version 3.1. In Illinois Natural History Survey. Champaign: Illinois Natural History Survey.
28. Vaughan Martini, A. (1989). Saccharomyces paradoxus comb. nov., a newly separated species of the Saccharomyces sensu stricto complex based upon nDNA/nDNA homologies. Syst Appl Microbiol 12, 179-182.
29. Vaughan Martini, A. & Kurtzman, C. P. (1985). Deoxyribonucleic acid relatedness among species of the genus Saccharomyces sensu stricto. Int J Syst Bacteriol 35, 508-511.
30. van der Walt, J. P. (1987). The typological yeast species, and its delimitation. In Biology of Yeasts, 2nd edn, pp. 95-121. Edited by A. H. Rose & J. S. Harrison. London: Academic Press.
31. Winge, Ö. & Roberts, C. (1949). Inheritance of enzymatic characters in yeasts, and the phenomenon of long-term adaptation. C R Trav Lab Carlesberg Ser Physiol 24, 263-315.
32. Woolford, J. L. J. (1989). Nuclear pre-mRNA splicing in yeast. Yeast 5, 439-457.
33. Yamada, Y., Higashi, T. & Mikata, K. (1996). Should Petasospora Boidin et Abadie (Saccharomycetaceae) be retained? - the phylogeny based on the partial sequences of 18S and 26S ribosomal RNAs. Biosci Biotechnol Biochem 60, 818-822.
34. Zhang, M. Q. & Marr, T. G. (1994). Fission yeast gene structure and recognition. Nucleic Acids Res 22, 1750-1759.