PCR differentiation of commercial yeast strains using intron splice site primers

Applied and Environmental Microbiology

Volumn 62, Issue 12, 1996, Pages 4514-4520

  De Barros Lopes, Miguel ^a,b   Soden, Alison ^a   Henschke, Paul A ^b   Langridge, Peter ^a  

^a UNIVERSITY OF ADELAIDE   (Australia)

^b AUSTRALIAN WINE RESEARCH INSTITUTE   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

OLIGONUCLEOTIDE;

ARTICLE; DNA DETERMINATION; DNA PURIFICATION; GENETIC POLYMORPHISM; INTRON; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; YEAST;

EID: 10544234614     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.62.12.4514-4520.1996     Document Type: Article

References (44)

1. Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl. 1994. Current protocols in molecular biology, vol. 2. John Wiley & Sons, Inc., New York.
2. Bakalinsky, A. T., and R. Snow. 1990. Conversion of wine strains of Saccharomyces cerevisiae to heterothallism. Appl. Environ. Microbiol. 56:849-857.
3. Bakalinsky, A. T., and R. Snow. 1990. The chromosomal constitution of wine strains of Saccharomyces cerevisiae. Yeast 6:367-382.
4. Barta, I., and R. Iggo. 1995. Autoregulation of expression of the yeast Dbp2p 'DEAD-box' protein is mediated by sequences in the conserved DBP2 intron. EMBO J. 14:3800-3808.
5. Bidenne, C., B. Blondin, S. Dequin, and F. Vezinhet. 1992. Analysis of the chromosomal DNA polymorphism of wine strains of Saccharomyces cerevisiae. Curr. Genet. 22:1-7.
6. Cole, G. M., D. E. Stone, and S. I. Reed. 1990. Stochiometry of G protein subunits affects the Saccharomyces cerevisiae mating pheromone signal transduction pathway. Mol. Cell. Biol. 10:510-517.
7. de Barros Lopes, M., and P. A. Henschke. Unpublished results.
8. Degré, R., D. Y. Thomas, J. Ash, K. Mailhiot, A. Morin, and C. Dubord. 1989. Wine yeast strain identification. Am. J. Enol. Vitic. 40:309-315.
9. Dubourdieu, D., A. Sokol, J. Zucca, P. Thalouarn, A. Dattee, and M. Aigle. 1987. Identification des souches de levures isolées de vins par l'analyse de leur ADN mitochondrial. Connaiss. Vigne Vin 21:267-278.
10. Fink, G. R. 1987. Pseudogenes in Yeast? Cell 49:5-6.
11. Hawkins, J. D. 1988. A survey on intron and exon lengths. Nucleic Acids Res. 16:9893-9908.
12. Hawthorne, D., and P. Philippsen. 1994. Genetic and molecular analysis of hybrids in the genus Saccharomyces involving S. cerevisiae, S. uvarum and a new species, S. douglasii. Yeast 10:1285-1296.
13. Heard, G. M., and G. H. Fleet. 1985. Growth of natural yeast flora during the fermentation of innoculated wine. Appl. Environ. Microbiol. 50:727-728.
14. Henschke, P. A. 1990. Evaluating wine yeasts for improved wine quality, p. 157-165. In P. J. Williams, D. M. Davidson, and T. H. Lee (ed.), Proceedings of the Seventh Australian Wine Industry Technical Conference, 13-17 August 1989, Adelaide, South Australia, Australian Industrial Publishers, Adelaide, South Australia.
15. Johnson, J. R., and R. K. Mortimer. 1986. Electrophoretic karyotyping of laboratory and commercial strains of Saccharomyces and other yeasts. Int. J. Syst. Bacteriol. 36:569-572.
16. Kalogeropoulos, A. 1995. Automatic intron detection in nuclear DNA sequences of Saccharomyces cerevisiae. Yeast 11:555-565.
17. Lavallée, F., Y. Salvas, S. Lamy, D. Y. Thomas, R. Degré, and L. Dulau. 1994. PCR and DNA fingerprinting used as quality control in the production of wine yeast strains. Am. J. Enol. Vitic. 45:86-91.
18. Longo, E., and F. Vezinhet. 1993. Chromosomal rearrangements during vegetative growth of a wild strain of Saccharomyces cerevisiae. Appl. Environ. Microbiol. 59:322-326.
19. Martens, A. Unpublished results.
20. Masneuf, I., and D. Dubourdieu. 1994. Comparaison de deux techniques d'identification des souches de levures de vinification basées sur le polymorphisme de l'ADN génomique: réaction de polymérisation en chaine (PCR) et analyse des caryotypes (électrphorèse en champ pulsé). J. Int. Sci. Vigne Vin 28:153-160.
21. Mattick, J. S. 1994. Introns: evolution and function. Curr. Opin. Genet. Dev. 4:823-831.
22. Melmer, G., and M. Buchwald. 1992. Identification of genes using oligonucleotides corresponding to splice site consensus sequences. Hum. Mol. Genet. 1:433-438.
23. Nellen, W., C. Donath, M. Moos, and D. Gallwitz. 1981. The nucleotide sequences of the actin genes from Saccharomyces carlsbergensis and Saccharomyces cerevisiae are identical except for their introns. J. Mol. Appl. Genet. 1:239-244.
24. Oosthuizen, A., J. L. F. Koch, B. C. Viljoen, H. B. Muller, and P. M. Lategan. 1987. The value of long-chain fatty acid composition in the identification of some brewery yeasts. J. Inst. Brew. 93:174-176.
25. Palumbi, S. R., and C. S. Baker. 1996. Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales. Mol. Biol. Evol. 11:426-435.
26. Pearson, B. M., A. T. Carter, J. M. Furze, and I. N. Roberts. 1995. A novel approach for discovering retrotransposons: characterization of a long terminal repeat element in the spoilage yeast Pichia membranaefaciens and its use in strain identification. Int. J. Syst. Bacteriol. 45:386-389.
27. Petering, J., P. Langridge, and P. A. Henschke. 1988. Fingerprinting wine yeasts: the application of chromosome electrophoresis. Aust. N. Z. Wine Ind. J. 3(3):48-52.
28. Querol, A., E. Barrio, T. Huerta, and D. Ramón. 1992. Molecular monitoring of wine fermentations conducted by active dry yeast strains. Appl. Environ. Microbiol. 58:2948-2953.
29. Querol, A., E. Barrio, and D. Ramón. 1992. A comparative study of different methods of yeast strain characterisation. Syst. Appl. Microbiol. 15:439-446.
30. Quesada, M. P., and J. L. Cenis. 1995. Use of random amplified polymorphic DNA (RAPD-PCR) in the characterization of wine yeasts. Am. J. Enol Vitic. 46:204-208.
31. Rankine, B. C. 1968. The importance of yeasts in determining the composition and quality of wines. Vitis 7:22-49.
32. Rankine, B. C. 1977. Modern developments in selection and use of pure yeast cultures for winemaking. Aust. Wine Brew. Spirit Rev. 96(8):31-33 and 96(9):32-34.
33. Rankine, B. C. 1977. Modern developments in selection and use of pure yeast cultures for winemaking. Aust. Wine Brew. Spirit Rev. 96(8):31-33 and 96(9):32-34.
34. Saiki, R. K., S. Scarf, F. Faloona, K. B. Mullis, G. T. Horn, H. A. Erlich, and N. Arnheim. 1985. Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle-cell anemia. Science 230:1350-1354.
35. Schütz, M., and J. Gafner. 1993. Analysis of yeast diversity during spontaneous and induced alcoholic fermenation. J. Appl. Bacteriol. 75:551-558.
36. Sherman, F., G. R. Fink, and J. B. Hicks. 1986. Laboratory course manual for methods in yeast genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
37. Shimmin, L. C., B. H.-J. Chang, and W.-H. Li. 1993. Male-driven evolution of DNA sequences. Nature (London) 362:745-747.
38. Slade, R. W., C. Moritz, A. Heideman, and P. T. Hale. 1993. Rapid assessment of single-copy nuclear DNA variation in diverse species. Mol. Ecol. 2:359-373.
39. Tarlow, J. K., A. I. F. Blakemore, A. Lennard, R. Solari, H. N. Hughes, A. Steinkasserer, and G. W. Duff. 1993. Polymorphism in human IL-1 receptor antagonist gene intron 2 is caused by variable numbers of an 86-bp tandem repeat. Hum. Genet. 91:403-404.
40. Thornton, R. J., and R. Eschenbruch. 1976. Homothallism in wine yeasts. Antonie Leeuwenhoek 42:503-509.
41. Van Vuuren, H. J. J., and L. van der Meer. 1987. Fingerprinting of yeasts by protein electrophoresis. Am. J. Enol. Vitic. 38:49-53.
42. Weining, S., and P. Langridge. 1991. Identification and mapping of polymorphisms in cereals based on the polymerase chain reaction. Theor. Appl. Genet. 82:209-216.
43. Woolford, J. L., Jr. 1989. Nuclear pre-mRNA splicing in yeast. Yeast 5:439-457.
44. Zhang, M. Q., and T. G. Marr. 1994. Fission yeast gene structure and recognition. Nucleic Acids Res. 22:1750-1759.