-
1
-
-
0036198797
-
Protein disulfide isomerases exploit synergy between catalytic and specific binding domains
-
Freedman R.B., Klappa P., Ruddock L.W. Protein disulfide isomerases exploit synergy between catalytic and specific binding domains. EMBO Rep. 3:2002;136-140.
-
(2002)
EMBO Rep.
, vol.3
, pp. 136-140
-
-
Freedman, R.B.1
Klappa, P.2
Ruddock, L.W.3
-
2
-
-
2442761708
-
The protein disulphide-isomerase family: Unravelling a string of folds
-
Ferrari D.M., Söling H.D. The protein disulphide-isomerase family: unravelling a string of folds. Biochem. J. 339:1999;1-10.
-
(1999)
Biochem. J.
, vol.339
, pp. 1-10
-
-
Ferrari, D.M.1
Söling, H.D.2
-
3
-
-
73649177752
-
Acceleration of reactivation of reduced bovine pancreatic ribonuclease by a microsomal system from rat liver
-
Goldberger R.F., Epstein C.J., Anfinsen C.B. Acceleration of reactivation of reduced bovine pancreatic ribonuclease by a microsomal system from rat liver. J. Biol. Chem. 238:1963;628-635.
-
(1963)
J. Biol. Chem.
, vol.238
, pp. 628-635
-
-
Goldberger, R.F.1
Epstein, C.J.2
Anfinsen, C.B.3
-
4
-
-
0029165589
-
Thioredoxin-a fold for all reasons
-
Martin J.L. Thioredoxin-a fold for all reasons. Structure. 3:1995;245-250.
-
(1995)
Structure
, vol.3
, pp. 245-250
-
-
Martin, J.L.1
-
6
-
-
0030934272
-
The CXXC motif: A rheostat in the active site
-
Chivers P.T., Prehoda K.E., Raines R.T. The CXXC motif: a rheostat in the active site. Biochemistry. 36:1997;4061-4066.
-
(1997)
Biochemistry
, vol.36
, pp. 4061-4066
-
-
Chivers, P.T.1
Prehoda, K.E.2
Raines, R.T.3
-
7
-
-
0029062201
-
A Molecular model for the redox potential difference between thioredoxin and DsbA, based on electrostatic calculations
-
Gane P.J., Freedman R.B., Warwicker J. A Molecular model for the redox potential difference between thioredoxin and DsbA, based on electrostatic calculations. J. Mol. Biol. 249:1995;376-387.
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 376-387
-
-
Gane, P.J.1
Freedman, R.B.2
Warwicker, J.3
-
8
-
-
0029559184
-
Why is DsbA such an oxidizing disulfide catalyst?
-
Grauschopf U., Winther R., Korber P., Zander T., Dallinger P., Bardwell J.C.A. Why is DsbA such an oxidizing disulfide catalyst? Cell. 83:1995;947-955.
-
(1995)
Cell
, vol.83
, pp. 947-955
-
-
Grauschopf, U.1
Winther, R.2
Korber, P.3
Zander, T.4
Dallinger, P.5
Bardwell, J.C.A.6
-
9
-
-
0030880594
-
Structural analysis of three His32 mutants of DsbA: Support for an electrostatic role of His32 in DsbA stability
-
Guddat L.W., Bardwell J.C.A., Glockshuber R., Huber-Wunderlich M., Zander T., Martin J.L. Structural analysis of three His32 mutants of DsbA: support for an electrostatic role of His32 in DsbA stability. Protein Sci. 6:1997;1893-1900.
-
(1997)
Protein Sci.
, vol.6
, pp. 1893-1900
-
-
Guddat, L.W.1
Bardwell, J.C.A.2
Glockshuber, R.3
Huber-Wunderlich, M.4
Zander, T.5
Martin, J.L.6
-
10
-
-
0031776171
-
A single dipeptide sequence modulates the redox properties of a whole enzyme family
-
Huber-Wunderlich M., Glockshuber R.A. A single dipeptide sequence modulates the redox properties of a whole enzyme family. Fold. Des. 3:1998;161-171.
-
(1998)
Fold. Des.
, vol.3
, pp. 161-171
-
-
Huber-Wunderlich, M.1
Glockshuber, R.A.2
-
11
-
-
0030868675
-
Elimination of all charged residues in the vicinity of the active-site helix of the disulfide oxidoreductase DsbA
-
Jacobi A., Huber-Wunderlich M., Hennecke J., Glockshuber R. Elimination of all charged residues in the vicinity of the active-site helix of the disulfide oxidoreductase DsbA. J. Biol. Chem. 272:1997;21692-21699.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 21692-21699
-
-
Jacobi, A.1
Huber-Wunderlich, M.2
Hennecke, J.3
Glockshuber, R.4
-
12
-
-
0039714219
-
Characterization of Escherichia coli thioredoxin variants mimicking the active-sites of other thiol/disulphide oxidoreductases
-
Mossner E., Huber-Wunderlich M., Glockshuber R. Characterization of Escherichia coli thioredoxin variants mimicking the active-sites of other thiol/disulphide oxidoreductases. Protein Sci. 7:1998;1233-1244.
-
(1998)
Protein Sci.
, vol.7
, pp. 1233-1244
-
-
Mossner, E.1
Huber-Wunderlich, M.2
Glockshuber, R.3
-
13
-
-
4243518910
-
Influence of the pK(a) value of the buried, active-site cysteine on the redox properties of thioredoxin-like oxidoreductases
-
Mossner E., Iwai H., Glockshuber R. Influence of the pK(a) value of the buried, active-site cysteine on the redox properties of thioredoxin-like oxidoreductases. FEBS Letters. 477:2000;21-26.
-
(2000)
FEBS Letters
, vol.477
, pp. 21-26
-
-
Mossner, E.1
Iwai, H.2
Glockshuber, R.3
-
14
-
-
0027481123
-
Redox properties of protein disulfide isomerase (DsbA) from Escherichia coli
-
Wunderlich M., Glockshuber R. Redox properties of protein disulfide isomerase (DsbA) from Escherichia coli. Protein Sci. 2:1993;717-726.
-
(1993)
Protein Sci.
, vol.2
, pp. 717-726
-
-
Wunderlich, M.1
Glockshuber, R.2
-
15
-
-
0027358654
-
The redox properties of protein disulfide isomerase (DsbA) of Escherichia coli result from a tense conformation of its oxidized form
-
Wunderlich M., Jaenicke R., Glockshuber R. The redox properties of protein disulfide isomerase (DsbA) of Escherichia coli result from a tense conformation of its oxidized form. J. Mol. Biol. 233:1993;559-566.
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 559-566
-
-
Wunderlich, M.1
Jaenicke, R.2
Glockshuber, R.3
-
16
-
-
0027254133
-
The reactive and destabilizing disulfide bond of DsbA, a protein required for protein disulfide bond formation in vivo
-
Zapun A., Bardwell J.C.A., Creighton T.E. The reactive and destabilizing disulfide bond of DsbA, a protein required for protein disulfide bond formation in vivo. Biochemistry. 32:1993;5083-5092.
-
(1993)
Biochemistry
, vol.32
, pp. 5083-5092
-
-
Zapun, A.1
Bardwell, J.C.A.2
Creighton, T.E.3
-
17
-
-
0031033048
-
Influence of acidic residues and the kink in the active-site helix on the properties of the disulfide oxidoreductase DsbA
-
Hennecke J., Spleiss C., Glockshuber R. Influence of acidic residues and the kink in the active-site helix on the properties of the disulfide oxidoreductase DsbA. J. Biol. Chem. 272:1997;189-195.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 189-195
-
-
Hennecke, J.1
Spleiss, C.2
Glockshuber, R.3
-
18
-
-
0032579404
-
Modelling charge interactions and redox properties in DsbA
-
Warwicker J. Modelling charge interactions and redox properties in DsbA. J. Biol. Chem. 273:1998;2501-2504.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 2501-2504
-
-
Warwicker, J.1
-
19
-
-
0028360184
-
Reactivity and ionization of the active site cysteine residues of DsbA, a protein required for disulfide bond formation in vivo
-
Nelson J.W., Creighton T.E. Reactivity and ionization of the active site cysteine residues of DsbA, a protein required for disulfide bond formation in vivo. Biochemistry. 33:1994;5974-5983.
-
(1994)
Biochemistry
, vol.33
, pp. 5974-5983
-
-
Nelson, J.W.1
Creighton, T.E.2
-
20
-
-
0025801897
-
The reactivities and ionization properties of the active site dithiol groups of mammalian protein disulphide-isomerase
-
Hawkins H., Freedman R.B. The reactivities and ionization properties of the active site dithiol groups of mammalian protein disulphide-isomerase. Biochem. J. 275:1991;335-339.
-
(1991)
Biochem. J.
, vol.275
, pp. 335-339
-
-
Hawkins, H.1
Freedman, R.B.2
-
21
-
-
0029918154
-
PH-dependence of the dithiol-oxidizing activity of DsbA (a periplasmic thiol:disulphide oxidoreducatse) and protein disulphide-isomerase: Studies with a novel simple peptide substrate
-
Ruddock L.W., Hirst T.R., Freedman R.B. pH-dependence of the dithiol-oxidizing activity of DsbA (a periplasmic thiol:disulphide oxidoreducatse) and protein disulphide-isomerase: studies with a novel simple peptide substrate. Biochem. J. 315:1996;1001-1005.
-
(1996)
Biochem. J.
, vol.315
, pp. 1001-1005
-
-
Ruddock, L.W.1
Hirst, T.R.2
Freedman, R.B.3
-
22
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Higgins D., Thompson J., Gibson T., Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22:1994;4673-4680.
-
(1994)
Nucl. Acids Res.
, vol.22
, pp. 4673-4680
-
-
Higgins, D.1
Thompson, J.2
Gibson, T.3
Thompson, J.D.4
Higgins, D.G.5
Gibson, T.J.6
-
23
-
-
0034623005
-
T-Coffee a novel method for multiple sequence alignments
-
Notredame C., Higgins D., Heringa J. T-Coffee a novel method for multiple sequence alignments. J. Mol. Biol. 302:2000;205-217.
-
(2000)
J. Mol. Biol.
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.2
Heringa, J.3
-
24
-
-
0030996742
-
Match-Box server: A multiple sequence alignment tool placing emphasis on reliability
-
Depiereux E., Baudoux G., Briffeuil P., Reginster I., De Bolle X., Vinals C., Feytmans E. Match-Box server: a multiple sequence alignment tool placing emphasis on reliability. Comput. Appl. Biosci. 13:1997;249-256.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 249-256
-
-
Depiereux, E.1
Baudoux, G.2
Briffeuil, P.3
Reginster, I.4
De Bolle, X.5
Vinals, C.6
Feytmans, E.7
-
25
-
-
0024297354
-
Multiple sequence alignment with hierarchical clustering
-
Corpet F. Multiple sequence alignment with hierarchical clustering. Nucl. Acids Res. 16:1998;10881-10890.
-
(1998)
Nucl. Acids Res.
, vol.16
, pp. 10881-10890
-
-
Corpet, F.1
-
26
-
-
0043264811
-
Defining the domain boundaries of the human protein disulphide isomerases
-
Alanen H.I., Salo K.E.H., Pekkala M., Siekkinen H.M., Pirneskoski A., Ruddock L.W. Defining the domain boundaries of the human protein disulphide isomerases. Antioxid. Redox. Signal. 5:2003;367-377.
-
(2003)
Antioxid. Redox. Signal
, vol.5
, pp. 367-377
-
-
Alanen, H.I.1
Salo, K.E.H.2
Pekkala, M.3
Siekkinen, H.M.4
Pirneskoski, A.5
Ruddock, L.W.6
-
27
-
-
0031237025
-
Calculating acid-dissociation constants of proteins using the boundary element method
-
Juffer A.H., Argos P., Vogel H.J. Calculating acid-dissociation constants of proteins using the boundary element method. J. Phys. Chem. ser. B. 101:1997;7664-7673.
-
(1997)
J. Phys. Chem. ser. B
, vol.101
, pp. 7664-7673
-
-
Juffer, A.H.1
Argos, P.2
Vogel, H.J.3
-
28
-
-
0002334742
-
The electric potential of a macromolecule in a solvent: A fundamental approach
-
Juffer A.H., Botta E.F.F., van Keulen B.A.M., van der Ploeg A., Berendsen H.J.C. The electric potential of a macromolecule in a solvent: a fundamental approach. J. Comput. Phys. 97:1991;144-171.
-
(1991)
J. Comput. Phys.
, vol.97
, pp. 144-171
-
-
Juffer, A.H.1
Botta, E.F.F.2
Van Keulen, B.A.M.3
Van Der Ploeg, A.4
Berendsen, H.J.C.5
-
29
-
-
0032059253
-
A flexible triangulation method to describe the solvent-accessible surface of biopolymers
-
Juffer A.H., Vogel H.J. A flexible triangulation method to describe the solvent-accessible surface of biopolymers. J. Comput. Aided. Mol. Des. 12:1998;1-11.
-
(1998)
J. Comput. Aided. Mol. Des.
, vol.12
, pp. 1-11
-
-
Juffer, A.H.1
Vogel, H.J.2
-
30
-
-
0003544049
-
-
Zürich: Vdf Hochschulverlag AG
-
van Gunsteren W.F., Billeter S.R., Eising A.A., Hünenberger P.H., Krüger P., Mark A.E., et al. Biomolecular simulation: the GROMOS96 manual and user guide. 1996;Vdf Hochschulverlag AG, Zürich.
-
(1996)
Biomolecular simulation: The GROMOS96 manual and user guide
-
-
Van Gunsteren, W.F.1
Billeter, S.R.2
Eising, A.A.3
Hünenberger, P.H.4
Krüger, P.5
Mark, A.E.6
-
32
-
-
0033954256
-
The Protein Data Bank
-
Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., Weissig H., et al. The Protein Data Bank. Nucl. Acids Res. 28:2000;235-242.
-
(2000)
Nucl. Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
-
34
-
-
0035789518
-
GROMACS 3.0: A package for molecular simulation and trajectory analysis
-
Lindahl E., Hess B., van der Spoel D. GROMACS 3.0: a package for molecular simulation and trajectory analysis. J. Mol. Model. 7:2001;306-317.
-
(2001)
J. Mol. Model
, vol.7
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
Van Der Spoel, D.3
-
36
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen H.J.C., Postma J.P.M., Di Nola A., van gunsteren W.F., Haak J.R. Molecular dynamics with coupling to an external bath. J. Chem. Phys. 181:1984;3684-3690.
-
(1984)
J. Chem. Phys.
, vol.181
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Di Nola, A.3
Van Gunsteren, W.F.4
Haak, J.R.5
-
38
-
-
84986440341
-
SETTLE: An analytical version of the SHAKE and RATTLE algorithms for rigid water molecules
-
Miyamoto S., Kollman P.A. SETTLE: an analytical version of the SHAKE and RATTLE algorithms for rigid water molecules. J. Comput. Chem. 13:1992;952-962.
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 952-962
-
-
Miyamoto, S.1
Kollman, P.A.2
-
39
-
-
0001585978
-
Improving efficiency of large time-scale molecular dynamic simulations of hydrogen rich systems
-
Feenstra K.A., Hess B., Berendsen H.J.C. Improving efficiency of large time-scale molecular dynamic simulations of hydrogen rich systems. J. Comput. Chem. 20:1999;786-798.
-
(1999)
J. Comput. Chem.
, vol.20
, pp. 786-798
-
-
Feenstra, K.A.1
Hess, B.2
Berendsen, H.J.C.3
|