Artiodactyl interspersed dna repeats in cetacean genomes

Journal of Molecular Evolution

Volumn 45, Issue 1, 1997, Pages 66-69

  Buntjer, J B ^a   Hoff, I A ^a   Lenstra, J A ^a  

^a UTRECHT UNIVERSITY   (Netherlands)

Author keywords

Artiodactyls; Interspersed repeats; Phylogeny; Whales

Indexed keywords

ARTICLE; ARTIODACTYLA; BASE PAIRING; CETACEA; DNA SEQUENCE; GENETIC ANALYSIS; GENOME; NONHUMAN; PHYLOGENY; TANDEM REPEAT; TAXONOMY; WHALE;

ANIMALS; ARTIODACTYLA; CETACEA; MAMMALS; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; REPETITIVE SEQUENCES, NUCLEIC ACID;

ARTIODACTYLA; CETACEA; MAMMALIA;

EID: 0030788418     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00006203     Document Type: Article

References (23)

1. Alexander LJ, Rohrer GA, Stone RT, Seattle CW (1995) Poreine SINE-associatedl microsatellite markers: evidence for new artiodactyl SINEs. Mamm Genome 6:464-468
2. Batzer MA, Arcot SS, Phinney JW, Alegria-Hartman M, Kass DH, Milligan SM, Kimpton C, Gill P, Hochmeister M, Ioannou PA, Herrera RJ, Boudreau DA, Scheer WD, Keats BJB, Deininger PL, Stoneking M (1996) Genetic variation of recent Alu insertions in human populations. J Mol Evol 42:22-29
3. Ciulla TA, Sklar RM, Hauser SL (1988) A simple method for DNA purification from peripheral blood. Anal Biochem 174:485-488
4. Deininger PL, Daniels GR (1986) The recent evolution of mammalian repetitive DNA elements. Trends Genet 2:76-80
5. Deininger PL, Jolly DJ, Rubin CM, Friedmann T, Schmid CW (1981) Base sequence studies of 300 nucleotide renatured repeated human DNA clones. J Mol Biol 151:17-33
6. D'Erchia AM, Gissi C, Pesole G, Saccone C, Arnason U (1996) The guinea pig is not a rodent. Nature 381:597-600
7. Gatesy J, Hayashi C, Cronin MA, Arctander P (1996) Evidence from milk casein genes that cetaceans are close relatives of hippopotamid artiodactyls. Mol Biol Evol 13:954-963
8. Graur D, Higgins DG (1994) Molecular evidence for the inclusion of the Cetaceans within the order Artiodactyla. Mol Biol Evol 11:357-364
9. Graur D, Hise WA, Li WH (1991) Is the guinea-pig a rodent? Nature 351:649-652
10. Hasegawa M, Adachi J (1996) Phylogenetic position of the cetaceans relative to artiodactyls: reanalysis of mitochondrial and nuclear sequences. Mol Biol Evol 13:710-717
11. Jelinek WR, Toomey TP, Leinwand L, Duncan CH, Biro PA, Choudary PV, Weissman SM, Rubin CM, Houck CM, Deininger PL, Scmid CW (1980) Uniquitos, interspersed repeated sequences in mammalian genomes. Proc Natl Acad Sci USA 77:1398-1402
12. Jobse C, Buntjer JB, Haagsma N, Breukelman HJ, Beintema JJ, Lenstra JA (1995) Evolution and recombination of bovine DNA repeats. J Mol Evol 41:277-283
13. Jurka J, Zietkiewicz E, Labuda D (1995) Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the mesozoic era. Nucleic Acids Res 23:170-175
14. Krayev AS, Markusheva TV, Kramerov DA, Ryskov AP, Skryabin KG, Bayev AA, Georgiev GP (1982) Ubiquitous transposon-like repeats B1 and B2 of the mouse genome: B2 sequencing. Nucleic Acids Res 10:7461-7475
15. Lenstra JA, Boxtel JAF, Zwaagstra KA, Schwerin M (1993) Short interspersed nuclear element (SINE) sequences of the Bovidae. Anim Genet 23:33-39
16. Martignetti JA, Brosius J (1993) Neural BC1 RNA as an evolutionary marker: guinea pig remains a rodent. Proc Natl Acad Sci USA 90:9698-9702
17. Modi WS, Gallagher DS, Womack JE (1996) Evolutionary histories of highly repeated DNA families among the Artiodactyla (Mammalia). J Mol Evol 42:337-349
18. Novacek MJ (1992) Mammalian phylogeny: shaking the tree. Nature 356:121-125
19. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning. A laboratory manual. 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
20. Smith AFA, Riggs AD (1995) MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation. Nucleic Acids Res 23:98-102
21. Takasaki N, Park L, Kaeriyama M, Gharrett AJ, Okada N (1996) Characterization of species-specifically amplified SINEs in three salmonid species - chum salmon, pink salmon and kokanee: the local environment of the genome may be important for the generation of a dominant source gene at a newly retroposed locus, J Mol Evol 42:103-116
22. Yasue H, Wada Y (1996) A swine SINE (PRE-1 sequence) distribution in swine-related animal species and its phylogenetic analysis in swine genome. Anim Genet 27:95-98
23. Zietkiewicz E, Labuda D (1996) Mosaic evolution of rodent B1 elements. J Mol Evol 42:66-72