The growth defect in Escherichia coli deficient in peptidyl-tRNA hydrolase is due to starvation for Lys-tRNALys

EMBO Journal

Volumn 15, Issue 11, 1996, Pages 2826-2833

  Heurgué Hamard, Valérie ^a   Mora, Liliana ^a   Guarneros, Gabriel ^b   Buckingham, Richard H ^a  

^a INST DE BIOLOGIE PHYSICO CHIMIQUE   (France)

^b DEPARTAMENTO DE FÍSICA   (Mexico)

Author keywords

GroESL; Peptidyl tRNA hydrolase; Processivity; Ribosome; tRNALys

Indexed keywords

ESCHERICHIA COLI;

BACTERIAL ENZYME; HYDROLASE; LYSINE TRANSFER RNA; PEPTIDYLTRANSFERASE;

ARTICLE; BACTERIAL GROWTH; BACTERIUM MUTANT; CONTROLLED STUDY; ENZYME DEFICIENCY; ESCHERICHIA COLI; GENE ISOLATION; GENE MUTATION; GROWTH INHIBITION; MOLECULAR CLONING; NONHUMAN; PLASMID; PRIORITY JOURNAL; RNA GENE; TEMPERATURE SENSITIVE MUTANT;

BASE SEQUENCE; CARBOXYLIC ESTER HYDROLASES; DNA PRIMERS; ESCHERICHIA COLI; GENES, SUPPRESSOR; GROEL PROTEIN; GROES PROTEIN; HEAT; MOLECULAR SEQUENCE DATA; PROTEIN BIOSYNTHESIS; RNA, TRANSFER, LYS;

EID: 0029976654     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1002/j.1460-2075.1996.tb00643.x     Document Type: Article

References (52)

1. Anderson,R.P. and Menninger,J.R. (1987) Tests of the ribosome editor hypothesis. III. A mutant Escherichia coli with a defective ribosome editor. Mol. Gen. Genet., 209, 313-318.
2. Atherly,A.G. (1978) Peptidyl-transfer RNA hydrolase prevents inhibition of protein synthesis initiation. Nature, 275, 769.
3. Atherly,A.G. (1979) Natural premature protein synthesis termination can be reduced in Escherichia coli by decreased translation rates. Mol. Gen. Genet., 175, 305-311.
4. Atherly,A.G. and Menninger,J.R. (1972) Mutant Escherichia coli strain with temperature sensitive peptidyl-transfer RNA hydrolase. Nature, 240, 245-246.
5. Atkins,J.F., Elseviers,D. and Gorini,L. (1972) Low activity of β-galactosidase in frameshift mutants of E.coli. Proc. Natl Acad. Sci. USA, 69, 1192-1195.
6. Birnboim,H.C. and Doly,J. (1979) A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res., 7, 1513-1523.
7. Brun,Y.V., Breton,R., Lanouette,P. and Lapointe,J. (1990a) Precise mapping and comparison of 2 evolutionarily related regions of the Escherichia coli K-12 chromosome - evolution of valU and lysT from an ancestral transfer RNA operon. J. Mol. Biol., 214, 825-843.
8. Brun,Y.V., Sanfacon,H., Breton,R. and Lapointe,J. (1990b) Closely spaced and divergent promoters for an aminoacyl-transfer RNA synthetase gene and a transfer RNA operon in Escherichia coli - transcriptional and post-transcriptional regulation of gltX, valU and alaW. J. Mol. Biol., 214, 845-864.
9. Phe of E.coli is transcribed from tandem promoters. Nucleic Acids Res., 13, 3699-3710.
10. Chapeville,R. Yot,P. and Paulin,D. (1969) Enzymatic hydrolysis of N-acylaminoacyl transfer RNAs. Cold Spring Harbor Symp. Quant. Biol., 34, 493-498.
11. Cox,R.A. and Littauer,U.Z. (1962) Ribonucleic acid from Eschericnia coli. Biochim. Biophys. Acta, 61, 197-208.
12. Cummings,H.S., Sands,J.F., Fraser,J. and Hershey,J.W. (1994) Characterization and expression of a gene encoding serine tRNAS from Escherichia coli. Biochimie, 76, 83-87.
13. Phe from E.coli: studies of the suppression of thermosensitive phenylalanyl-tRNA synthetase. Eur. J. Biochem., 168, 365-369.
14. Dong,H. and Kurland,C.G. (1995) Ribosome mutants with altered accuracy translate with reduced processivity. J. Mol. Biol., 248, 551-561.
15. Emilsson,V. and Kurland,C.G. (1990) Growth rate dependence of transfer RNA abundance in Escherichia coli. EMBO J., 9, 4359-4366.
16. Emilsson,V., Naslund,A.K. and Kurland,C.G. (1992) Growth rate dependent accumulation of twelve tRNA species in Escherichia coli. J. Mol. Biol., 230, 483-491.
17. Fayet,O., Louarn,J.M. and Georgopoulos,C. (1986) Suppression of the Escherichia coli dnaA46 mutation by amplification of the groES and groEL genes. Mol. Gen. Genet., 202, 435-445.
18. Garcia Villegas,M.R., De La Vega,FM., Galindo,J.M., Segura,M., Buckingham,R.H. and Guarneros,G. (1991) Peptidyl-tRNA hydrolase is involved in lambda inhibition of host protein synthesis. EMBO J., 10, 3549-3555.
19. Gingrich,P.E. and Menninger,J.R. (1978) Phenotypic suppressors of E.coli with temperature sensitive peptidyl-transfer RNA hydrolase. Fed. Proc., 37, 1625.
20. Gordon,C.L., Sather,S.K., Casjens,S. and King,J. (1994) Selective in vivo rescue by GroEL/ES of thermolabile folding intermediates to phage P22 structural proteins. J. Biol. Chem., 269, 27941-27951.
21. Haenni,A.L. and Chapeville,F. (1966) The behaviour of acetylphenylalanyl soluble ribonucleic acid in polyphenylalanine synthesis. Biochim. Biophys. Acta, 114, 135-148.
22. Henderson,D. and Weil,J. (1976) A mutant of Escherichia coli that prevents growth of phage lambda and is bypassed by lambda mutants in a nonessential region of the genome. Virology, 71, 546-559.
23. Heurgué-Hamard,V., Mora,L. and Buckingham,R.H. (1995) Rapid and precise chromosomal mapping of genomic probes in Escherichia coli using the digital physical map. Nucleic Acids Res., 23, 2801-2802.
24. Jørgensen,F. and Kurland,C.G. (1990) Processivity errors of gene expression in Escherichia coli. J. Mol. Biol., 215, 511-521.
25. Jørgensen,F., Adamski,F.M., Tate,W.P. and Kurland,C.G. (1993) Release factor-dependent false stops are infrequent in Escherichia coli. J. Mol. Biol., 230, 41-50.
26. Kohara,Y., Akiyama,K. and Isono,K. (1987) The physical map of the whole Escherichia coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell, 50, 495-508.
27. Thr2. FEBS Lett., 272, 55-57.
28. Kurland,C. and Ehrenberg,M. (1985) Constraints on the accuracy of mRNA movement. Q. Rev. Biophys., 18, 423-450.
29. Maloy,S.R. and Nunn,W.D. (1981) Selection for loss of tetracycline resistance by Escherichia coli. J. Bacteriol., 145, 1110-1112.
30. Manley,J.L. (1978) Synthesis and degradation of termination and premature termination fragments of β-galactosidase in vitro. J. Mol. Biol., 125, 407-432.
31. Marchuk,D.,Drumm,M.,Saulino,A. and Collins,F.S. (1991) Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products. Nucleic Acids Res., 19, 1154.
32. Menninger,J.R. (1976) Peptidyl-transfer RNA dissociates during protein synthesis from ribosomes of E.coli. J. Biol. Chem., 251, 3392-3398.
33. Menninger,J.R. (1977) Ribosome editing and the error catastrophe hypothesis of cellular aging. Mech. Ageing Dev., 6, 131-142.
34. Menninger,J.R. (1978) The accumulation as peptidyl-transfer RNA of isoaccepting transfer RNA families in E.coli with temperature-sensitive peptidyl-transfer RNA hydrolase. J. Biol. Chem., 253, 6808-6813.
35. Menninger,J.R., Walker,C., Tan,P.F. and Atherly,A.G. (1973) Studies on the metabolic role of peptidyl-tRNA hydrolase. I. Properties of a mutant E.coli with temperature-sensitive peptidyl-tRNA hydrolase. Mol. Gen. Genet., 121, 307-324.
36. Mierendorf,R.C. and Pfeffer,D. (1987) Direct sequencing of denatured plasmid DNA. Methods Enzymol., 152, 556-562.
37. Miller,J.H. (1992) A Short Course in Bacterial Genetics: A Laboratory Manual and Handbook for Escherichia coli and Related Bacteria. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
38. O'Connor,M., Willis,N.M., Bossi,L., Gesteland,R.F. and Atkins,J.F. (1993) Functional tRNAs with altered 3′ ends. EMBO J., 12, 2559-2566.
39. Rudd,K.E. (1992) Alignment of E.coli DNA sequences to a revised, integrated restriction map. In Miller,J.H. (ed.), A Short Course in Bacterial Genetics: A Laboratory Manual and Handbook for Escherichia coli and Related Bacteria. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 2.3-2.43.
40. Ryden-Aulin,M.R. and Hughes,D. (1990) Overproduction of release factor reduces spontaneous frameshifting and frameshift suppression by mutant elongation factor Tu. J. Bacteriol., 172, 6721-6726.
41. Sambrook,J., Fritsch,E.F. and Maniatis,T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
42. Sanger,F., Nicklen,S. and Coulson,A.R. (1977) DNA sequencing with chain-terminating inhibitors. Proc. Natl Acad. Sci. USA, 74, 5463-5467.
43. Singer,M., Baker,T.A., Schnitzler,G., Deischel,S.M., Goel,M., Dove,W., Jaacks,J., Grossman,A.D., Erickson,J.W. and Gross,C.A. (1989) A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli. Microbiol. Rev., 53, 1-24.
44. Smith,D. and Yarus,M. (1989) Transfer RNA structure and coding specificity. I. Evidence that a D-arm mutation reduces tRNA dissociation from the ribosome. J. Mol. Biol., 206, 489-501.
45. Springer,M., Graffe,M., Dondon,J. and Grunberg-Manago,M. (1989) tRNA-like structures and gene regulation at the translational level: a case of molecular mimicry in Escherichia coli. EMBO J., 8, 2417-2424.
46. Lys and an AAG lysine codon. Gene. Dev., 6, 511-519.
47. Lys. J. Bacteriol., 163, 1288-1289.
48. Van Dik,T.K., Galenby,A.A. and LaRossa,R.A. (1989) Demonstration by genetic suppression of interaction of GroE products with many proteins. Nature, 342, 451-453.
49. Vogel,H.J. and Bonner,D.M. (1955) Acetylornithinase of Escherichia coli: partial purification and some properties. J. Biol. Chem., 218, 97-106.
50. Wang,F.W. and Kushner,S.R. (1991) Construction of low-copy-number vectors for cloning, sequencing and gene expression in Escherichia coli. Gene, 100, 195-199.
51. Trp and its charging and their effect on regulation of transcription termination at the attenuator of the tryptophan operon. J. Mol. Biol., 113, 663-677.
52. Zeilstra-Ryalls,J., Fayet,O., Baird,L. and Georgopoulos,C. (1993) Sequence analysis and phenotypic characterization of groEL mutations that block lambda and T4 bacteriophage growth. J. Bacteriol., 175, 1134-1143.