메뉴 건너뛰기




Volumn 3, Issue 4, 1997, Pages 420-428

Unconventional structure of tRNALysSUU anticodon explains tRNA's role in bacterial and mammalian ribosomal frameshifting and primer selection by HIV-1

Author keywords

2 thiouridines; Anticodon conformation; E. coil tRNALys; E. coli tRNAGlu; HIV 1; Mammalian tRNALys3; Modified nucleosides; N 6 threonylcarbamoyl adenosine; NMR

Indexed keywords

DNA DIRECTED DNA POLYMERASE GAMMA; OLIGONUCLEOTIDE; RNA DIRECTED DNA POLYMERASE; TRANSFER RNA; VIRUS ENZYME;

EID: 0031007127     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (35)

References (54)
  • 1
    • 0001075930 scopus 로고
    • A highly effective route to N,N‰-disubstituted ureas under mild conditions. An application to the synthesis of tRNA anticodon loop fragments containing ureidonucleosides
    • Adamiak R, Stawinski J. 1977. A highly effective route to N,N‰-disubstituted ureas under mild conditions. An application to the synthesis of tRNA anticodon loop fragments containing ureidonucleosides. Tetrahedron Lett 1977:1935-1936.
    • (1977) Tetrahedron Lett , vol.1977 , pp. 1935-1936
    • Adamiak, R.1    Stawinski, J.2
  • 3
    • 0039547877 scopus 로고
    • A model nucleic acid system for NMR investigations of functionally important conformational changes: The tRNA anticodon
    • Agris PF, Brown SC. 1995. A model nucleic acid system for NMR investigations of functionally important conformational changes: The tRNA anticodon. Methods Enzymol 261:277-299.
    • (1995) Methods Enzymol , vol.261 , pp. 277-299
    • Agris, P.F.1    Brown, S.C.2
  • 8
    • 0025815046 scopus 로고
    • The 3 Å crystal structure of yeast initiator tRNA: Functional implications in initiator/elongator discrimination
    • Basavappa R, Sigler PB. 1991. The 3 Å crystal structure of yeast initiator tRNA: Functional implications in initiator/elongator discrimination. EMBO J 10:3105-3111.
    • (1991) EMBO J , vol.10 , pp. 3105-3111
    • Basavappa, R.1    Sigler, P.B.2
  • 10
    • 0028504070 scopus 로고
    • Determination of the back-bone torsion angle e in nucleic acids
    • Blommers MJJ, Nanz D, Zerbe O. 1994. Determination of the back-bone torsion angle e in nucleic acids. J Biotnol NMR 4:595-601.
    • (1994) J Biotnol NMR , vol.4 , pp. 595-601
    • Blommers, M.J.J.1    Nanz, D.2    Zerbe, O.3
  • 12
    • 0027081208 scopus 로고
    • A base-triple structural domain in RNA
    • Chastain M, Tinoco I Jr. 1992. A base-triple structural domain in RNA. Biochemistry 32:12733-12741.
    • (1992) Biochemistry , vol.32 , pp. 12733-12741
    • Chastain, M.1    Tinoco Jr., I.2
  • 13
    • 0029907152 scopus 로고    scopus 로고
    • Lys transcript: Anticodon recognition and conformational changes upon binding of a lysyl-adenylate analogue
    • Lys transcript: Anticodon recognition and conformational changes upon binding of a lysyl-adenylate analogue. EMBO J 15:6321-6334.
    • (1996) EMBO J , vol.15 , pp. 6321-6334
    • Cusack, S.1    Yaremchuk, A.2    Tukalo, M.3
  • 14
    • 0029585377 scopus 로고
    • First glimpses at structure-function relationships of the nucleocapsid protein of retroviruses
    • Darlix J-L, Lapadat-Tapolsky M, de Rocquigny H, Roques PB. 1995. First glimpses at structure-function relationships of the nucleocapsid protein of retroviruses. J Mol Biol 254:523-537.
    • (1995) J Mol Biol , vol.254 , pp. 523-537
    • Darlix, J.-L.1    Lapadat-Tapolsky, M.2    De Rocquigny, H.3    Roques, P.B.4
  • 15
    • 0029018270 scopus 로고
    • Efficient extension of a misaligned tRNA-primer during replication of the HIV-1 retrovirus
    • Das AT, Berkhout B. 1995. Efficient extension of a misaligned tRNA-primer during replication of the HIV-1 retrovirus. Nucleic Acids Res 23:1319-1326.
    • (1995) Nucleic Acids Res , vol.23 , pp. 1319-1326
    • Das, A.T.1    Berkhout, B.2
  • 18
    • 0030606301 scopus 로고    scopus 로고
    • HIV-1 reverse transcriptase discriminates against non-self primers
    • Essink BBO, Das AT, Berkhout B. 1996. HIV-1 reverse transcriptase discriminates against non-self primers. J Mol Biol 264:243-254.
    • (1996) J Mol Biol , vol.264 , pp. 243-254
    • Essink, B.B.O.1    Das, A.T.2    Berkhout, B.3
  • 20
    • 0024362769 scopus 로고
    • Ribonucleoside analysis by reversed phase high performance liquid chromatography
    • Gehrke CW, Kuo KCT, eds. Amsterdam: Elsevier Publishing Co.
    • Gehrke CW, Kuo KCT. 1990. Ribonucleoside analysis by reversed phase high performance liquid chromatography. In: Gehrke CW, Kuo KCT, eds. Chromatography and modification of nucleosides. Amsterdam: Elsevier Publishing Co. pp A3-A72.
    • (1990) Chromatography and Modification of Nucleosides
    • Gehrke, C.W.1    Kuo, K.C.T.2
  • 21
    • 0016838773 scopus 로고
    • Specific cleavage of tRNA by nuclease Sl
    • Harada F, Dahlberg JE. 1975. Specific cleavage of tRNA by nuclease Sl. Nucleic Acids Res 2:865-871.
    • (1975) Nucleic Acids Res , vol.2 , pp. 865-871
    • Harada, F.1    Dahlberg, J.E.2
  • 25
    • 0027331556 scopus 로고
    • Modified nucleotides of primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription
    • Isel C, Marquet R, Keith G, Ehresmann C, Ehresmann B. 1993. Modified nucleotides of primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription. J Biol Chem 268:25269-25272.
    • (1993) J Biol Chem , vol.268 , pp. 25269-25272
    • Isel, C.1    Marquet, R.2    Keith, G.3    Ehresmann, C.4    Ehresmann, B.5
  • 26
    • 0024277965 scopus 로고
    • Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region
    • Jacks T, Madhami HD, Masiarz FR, Varmus HE. 1988. Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region. Cell 55:447-458.
    • (1988) Cell , vol.55 , pp. 447-458
    • Jacks, T.1    Madhami, H.D.2    Masiarz, F.R.3    Varmus, H.E.4
  • 27
    • 0001643005 scopus 로고
    • Relaxation matrix analysis of two-dimensional nuclear Overhauser effect spectra
    • James TL. 1994. Relaxation matrix analysis of two-dimensional nuclear Overhauser effect spectra. Curr Opin Struct Biol 1:1042-1053.
    • (1994) Curr Opin Struct Biol , vol.1 , pp. 1042-1053
    • James, T.L.1
  • 28
    • 0028207541 scopus 로고
    • Reverse transcriptase is an important factor for the primer tRNA selection in HIV-1
    • Jiang M, Mak J, Huang Y, Kleiman L. 1994. Reverse transcriptase is an important factor for the primer tRNA selection in HIV-1. Leukemia 8:S149-S151.
    • (1994) Leukemia , vol.8
    • Jiang, M.1    Mak, J.2    Huang, Y.3    Kleiman, L.4
  • 29
  • 31
    • 0029044016 scopus 로고
    • Analysis of the nucleic acid annealing activities of nucleocapsid protein from HIV-1
    • Lapadat-Tapolsky M, Femelle C, Borie C, Darlix JL. 1995. Analysis of the nucleic acid annealing activities of nucleocapsid protein from HIV-1. Nucleic Acids Res 23:2434-2441.
    • (1995) Nucleic Acids Res , vol.23 , pp. 2434-2441
    • Lapadat-Tapolsky, M.1    Femelle, C.2    Borie, C.3    Darlix, J.L.4
  • 33
    • 0009911094 scopus 로고
    • The protected derivatives of 5-methylaminomethyl-2-thiouridine and 5-carboxymethyl-2-thiouridine as components for oligonucleotide synthesis
    • Malkiewicz A, Sochacka E. 1983. The protected derivatives of 5-methylaminomethyl-2-thiouridine and 5-carboxymethyl-2-thiouridine as components for oligonucleotide synthesis. Tetrahedron Lett 48:5387-5390.
    • (1983) Tetrahedron Lett , vol.48 , pp. 5387-5390
    • Malkiewicz, A.1    Sochacka, E.2
  • 35
    • 0029061471 scopus 로고
    • 3 to reverse transcriptase from human immunodeficiency vrus type I
    • 3 to reverse transcriptase from human immunodeficiency vrus type I. EMBO J 24:2679-2687.
    • (1995) EMBO J , vol.24 , pp. 2679-2687
    • Mishima, Y.1    Steitz, J.A.2
  • 36
    • 0028943958 scopus 로고
    • RNA modified uridines VII: Chemical synthesis and initial analysis of tRNA D-loop oligomers with tandem modified uridines
    • Nawrot B, Malkiewicz A, Smith WS, Sierzputowska-Gracz H, Agris PF. 1995. RNA modified uridines VII: Chemical synthesis and initial analysis of tRNA D-loop oligomers with tandem modified uridines. Nucleosides and Nucleotides 14:143-165.
    • (1995) Nucleosides and Nucleotides , vol.14 , pp. 143-165
    • Nawrot, B.1    Malkiewicz, A.2    Smith, W.S.3    Sierzputowska-Gracz, H.4    Agris, P.F.5
  • 37
    • 0020480702 scopus 로고
    • Recent developments in the chemical synthesis of polynucleotides
    • Ohtsuka E, Ikehara M, Soil D. 1982. Recent developments in the chemical synthesis of polynucleotides. Nucleic Acids Res 20:6553-6570.
    • (1982) Nucleic Acids Res , vol.20 , pp. 6553-6570
    • Ohtsuka, E.1    Ikehara, M.2    Soil, D.3
  • 38
    • 0000132576 scopus 로고
    • The chemical synthesis of oligo- and polynucleotides by the phosphotriester approach
    • Reese CB. 1978. The chemical synthesis of oligo- and polynucleotides by the phosphotriester approach. Tetrahedron 34:3143-3179.
    • (1978) Tetrahedron , vol.34 , pp. 3143-3179
    • Reese, C.B.1
  • 39
    • 0025951290 scopus 로고
    • Lys primer binding site of human immunodeficiency virus type 1 identify essential regions for reverse transcription
    • Lys primer binding site of human immunodeficiency virus type 1 identify essential regions for reverse transcription. J Virol 65:4555-4564.
    • (1991) J Virol , vol.65 , pp. 4555-4564
    • Rhim, H.1    Park, J.2    Morrow, C.D.3
  • 40
    • 0024392753 scopus 로고
    • Structure of E. coli glutaminyl-tRNA synthetase complexed with tRNA gln and ATP at 2.8 Å resolution
    • Rould MA, Perona JJ, Soil D, Steitz TA. 1989. Structure of E. coli glutaminyl-tRNA synthetase complexed with tRNA gln and ATP at 2.8 Å resolution. Science 246:1135-1142.
    • (1989) Science , vol.246 , pp. 1135-1142
    • Rould, M.A.1    Perona, J.J.2    Soil, D.3    Steitz, T.A.4
  • 47
    • 0026348081 scopus 로고
    • RNA structure and NMR spectroscopy
    • Varani G, Tinoco I Jr. 1991. RNA structure and NMR spectroscopy. Quart Rev Biophys 24:479-532.
    • (1991) Quart Rev Biophys , vol.24 , pp. 479-532
    • Varani, G.1    Tinoco Jr., I.2
  • 50
    • 0019131711 scopus 로고
    • Reactions of 2-thioribothymidine and 4-thiouridine with hydrogen peroxide in transfer ribonucleic acids from Thermus thermophilus and Escherkhia coli as studied by circular dichroism
    • Watanabe K. 1980. Reactions of 2-thioribothymidine and 4-thiouridine with hydrogen peroxide in transfer ribonucleic acids from Thermus thermophilus and Escherkhia coli as studied by circular dichroism. Biochemistry 19:5542-5549.
    • (1980) Biochemistry , vol.19 , pp. 5542-5549
    • Watanabe, K.1
  • 52
    • 84988053694 scopus 로고
    • An all atom force field for simulations of proteins and nucleic acids
    • Weiner SJ, Kollman PA, Nguyen DT, Case DA. 1986. An all atom force field for simulations of proteins and nucleic acids. J Comp Chem 7:230-253.
    • (1986) J Comp Chem , vol.7 , pp. 230-253
    • Weiner, S.J.1    Kollman, P.A.2    Nguyen, D.T.3    Case, D.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.