FISH physical mapping with barley BAC clones

Plant Journal

Volumn 11, Issue 1, 1997, Pages 149-156

  Lapitan, Nora L V ^a   Brown, Susan E ^a   Kennard, Wayne ^a,b   Stephens, Janice L ^a   Knudson, Dennis L ^a  

^a Veterinary Dentistry and Oral Surgery   (United States)

^b UNIVERSITY OF MINNESOTA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0031037470     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.1997.11010149.x     Document Type: Article

References (46)

1. Ambros, P.P., Matzke, M.A. and Matzke, A.J.M. (1986) Detection of a 17 kb unique sequence (T-DNA) in plant chromosomes by in situ hybridization. Chromosoma, 94, 11-18.
2. Arondel, V., Lemieux, B., Hwang, I., Gibson, S., Goodman, H.M. and Somerville, C.R. (1992) Map-based cloning of a gene controlling Omega-3 fatty acid desaturation in Arabidopsis. Science, 258, 1353-1355.
3. Arumuganathan, K. and Earle, E.D. (1991) Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9, 208-219.
4. Ausubel, F., Brent, R., Kingston, R., Moore, D., Seidman, J., Smith, J. and Struhl, K. (1987) Current Protocols in Molecular Biology. New York: Greene Publishing Associates and Wiley-Interscience.
5. Baltenberger, D.E., Ohm, H.W. and Foster, J.E. (1987) Reactions of oat, barley, and wheat to infection with barley yellow dwarf virus isolates. Crop Sci. 27, 195-198.
6. Bernatzky, R. and Tanksley, S.D. (1986) Methods for detection of single- or low-copy sequences in tomato on Southern Blots. Plant Mol. Biol. Rep. 4, 37-41.
7. Bray-Ward, P., Menninger, J. and Ward, D.C. (1996) Integration of the cytogenetic, genetic, and physical maps of the human genome by FISH mapping of CEPH YAC clones. Genomics, 32, 1-14.
8. Bronson, S.K., Pei, J., Taillon-Miller, P., Chorney, M.J., Geraghty, D.E. and Chaplin, D.D. (1991) Isolation and characterization of yeast artificial chromosome clones linking the HLA-B and HLA-C loci. Proc. Natl Acad. Sci. USA, 88, 1676-1680.
9. Brown, S.E., Menninger, J., Difillipantonio, M., Beaty, B.J., Ward, D.C. and Knudson, D.L. (1995) Toward a physical map of Aedes aegypti. Insect Mol. Biol. 4, 161-167.
10. Choi, S., Creelman, R.A., Mullet, J.E. and Wing, R.A. (1995) Construction and characterization of a bacterial artificial chromosome library of Arabidopsis thaliana. Plant Mol. Biol. Rep. 13, 124-128.
11. Clarke, L. and Carbon, J. (1976) A colony bank containing synthetic ColE1 hybrid plasmids representative of the entire E. coli genome. Cell, 9, 91-99.
12. Edwards, K.J., Thompson, H., Edwards, D., de Saizieu, A., Sparks, C., Thompson, J.A., Greenland, A.J., Eyers, M. and Schuch, W. (1992) Construction and characterization of a yeast artificial chromosome library containing three haploid genome maize genome equivalents. Plant Mol. Biol. 19, 299-308.
13. Feinberg, A.P. and Vogelstein, B. (1983) A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132, 6-13.
14. Ferguson, M., Brown, S. and Knudson, D. (1996) FISH digital imaging microscopy in mosquito genomics. Parasitol. Today, 12, 91-96.
15. Flavell, R. (1986) Repetitive DNA and chromosome evolution in plants. Phil. Trans. R. Soc. Lond. B312, 227-242.
16. Forde, B.G.M., Kreis, M., Williamson, M.S., Fry, R.P., Pywell, J., Shewry, P.R., Bunce, N. and Miflin, B.J. (1985) Short tandem repeats shared by B- and C-hordein cDNAs suggest a common origin for two groups of cereal storage protein genes. EMBO J. 4, 9-15.
17. Giraudat, J., Hauge, B.M., Valon, C., Smalle, J., Parcy, F. and Goodman, H.M. (1992) Isolation of the Arabidopsis ABl3 gene by positional cloning. Plant Cell, 4, 1251-1261.
18. Good, A.G., Pelcher, L.E. and Crosby, W.L. (1988) Nucleotide sequence of a complete barley alcohol dehydrogenase 1 cDNA Nucl. Acids Res. 16, 7182.
19. Green, E.D. and Olson, M.V. (1990) Chromosomal region of the cystic fibrosis gene in yeast artificial chromosome: a model for human genome mapping. Science, 250, 94-98.
20. Green, E.D., Riethman, H.C., Dutchik, J.E. and Olson, M.V. (1991) Detection and characterization of chimeric yeast artificial chromosome clones. Genomics, 11, 658-669.
21. Grill, E. and Somerville, C. (1991) Construction and characterization of a yeast artificial chromosome library of Arabidopsis which is suitable for chromosome walking. Theor. Appl. Genet. 226, 484-490.
22. Hanson, R.E., Zwick, M.S., Choi, S., Islam-Faridi, M.M., McKnight, T.D., Wing, R.A., Price, H.J. and Stelly, D.M. (1995) Fluorescent in situ hybridization of a bacterial artificial chromosome. Genome, 38, 646-651.
23. Holmes, D.S. and Quigley, M. (1981) A rapid boiling for the preparation of bacterial plasmids. Anal. Biochem. 114, 193-197.
24. Jiang, J., Gill, B.S., Wang, G., Ronald, P.C. and Ward, D.C. (1995) Metaphase and interphase fluorescence in situ hybridization mapping of the rice genome with bacterial artificial chromosomes. Proc. Natl Acad. Sci. USA, 92, 4487-4491.
25. Kilian, A., Steffenson, B.J., Saghai Maroof, M.A. and Kleinhofs, A. (1993) RFLP markers linked to the durable stem rust resistance gene Rpg1 in barley. Mol. Plant-Microbe Interact. 7, 298-301.
26. Kleine, M., Michalek, W., Graner, A., Herrmann, R.G. and Jung, C. (1993) Construction of a barley (Hordeum vulgare L.) YAC library and isolation of a Hor1- specific clone. Mol. Gen. Genet. 240, 265-272.
27. Kleinhofs, A., Kilian, A., Saghai Maroof, M.A. et al. (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome. Theor. Appl. Genet. 86, 705-712.
28. Kursheed, B. and Rogers, J.C. (1988) Barley α-amylase genes. J. Biol. Chem. 263, 18 953-18 960.
29. Lawrence, J.B., Villnace, C.A. and Singer, R.H. (1988) Sensitive, high-resolution chromatin and chromosome mapping in situ : presence and orientation of two closely intergrated copies of EBV in a lymphoma line. Cell, 52, 51-61.
30. Lehfer, H., Busch, W., Martin, R. and Herrmann, R.G. (1993) Localization of the B-hordein locus on barley chromosomes using fluorescence in situ hybridization. Chromosoma, 102, 428-432.
31. Lichter, R. Cremer, T., Borden, J., Manuelidis, L. and Ward, D.C. (1988) Delineation of individual human chromosomes in metaphase and interphase cells by In situ suppression hybridization using recombinant DNA libraries. Human Genet. 80, 224-234.
32. Martin, G.B., Ganal, M.W. and Tanksley, S.D. (1992) Construction of a yeast artificial chromosome library of tomato and identification of cloned segments linked to two disease resistance loci. Mol. Gen. Genet 233, 25-32.
33. Martin, G.B., Brommonschenkel, S.H., Chunwongse, J., Frary, A., Ganal, M., Spivey, M., Wu, T., Earle, E. and Tanksley, S.D. (1993) Map-based cloning of a protein kinase gene conferring disease resistance in tomato. Science, 262, 1432-1436.
34. McCouch, S.R., Kochert, G., Yu, Z.H., Wang, Z.Y., Khush, G.S., Coffman, W.R. and Tanksley, S.D. (1988) Molecular mapping of rice chromosomes. Theor. Appl. Genet. 76, 815-829.
35. Pedersen, C. and Linde-Laursen, I. (1995) The relationship between physical and genetic distances at the Hor1 and Hor2 loci of barley estimated by two-colour fluorescent in situ hybridization. Theor. Appl. Genet. 91, 941-946.
36. Rimpau, J., Smith, D.B. and Flavell, R.B. (1980) Sequence organisation in barley and oats chromosomes revealed by interspecies DNA/DNA hybridisation. Heredity, 44, 131-149.
37. Rogers, J.C., Dean, D. and Heck, G.R. (1985) Aleurain: a barley thiol protease closely related to mammalian cathepsin H. Proc. Natl Acad. Sci. USA, 82, 6512-6516.
38. Shen, D.-L, Wang, Z.-F. and Wu, M. (1987) Gene mapping on maize pachytene chromosomes by in situ hybridization. Chromosoma, 95, 311-314.
39. Shizuya, H., Birren, B., Kim, U.-J., Mancino, V., Slepak, T., Tachiiri, Y. and Simon, M. (1992) Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc. Natl Acad. Sci. USA, 89, 8794-8797.
40. Siedler, H. and Graner, A. (1991) Construction of physical maps of the Hor1 locus of two barley cultivars by pulsed field gel electrophoresis. Mol. Gen. Genet. 226, 177-181.
41. Viegas-Pequignot, E., Dutrillaux, B., Magdelenat, H. and Coppey-Moisan, M. (1989) Mapping of single-copy DNA sequences on human chromosomes by in situ hybridization with biotinylated probes: Enhancement of detection sensitivity by intensified-fluorescence digital-imaging microscopy. Proc. Natl Acad. USA, 86, 582-586.
42. Wang, G.-L. Holsten, T.E., Song, W.-Y., Wang, H.-P. and Ronald, P.C. (1995) Construction of a rice bacterial artificial chromosome library and identification of clones linked to the Xa-21 disease resistance locus. Plant J. 7, 525-533.
43. Wing, R.A., Rastogi, V., Zhang, H.B., Paterson, A.H. and Tanksley, S.D. (1994) Embedding plant protoplasts in agarose microbeads for the purpose of physical mapping and YAC cloning. Plant J. 4, 893-898.
44. Woo, S.-S., Jiang, J., Gill, B.S., Paterson, A.H. and Wing, R.A. (1994) Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucl. Acids Res. 22, 4922-2931.
45. Wu, K.S., Roder, M.S. and Ganal, M.W. (1992) Isolation of plant DNA for PFGE. Methods Mol. Biol. 12, 145-157.
46. Zhang, H.B., Zhao, X., Paterson, A.H. and Wing, R.A. (1994) Preparation of megabase-sized DNA from plant nuclei. Plant J. 7, 175-184.