A sequence-ready BAC/PAC contig and partial transcript map of approximately 1.5 Mb in human chromosome 17q25 comprising multiple disease genes

Genomics

Volumn 62, Issue 2, 1999, Pages 242-250

  Kuhlenbäumer, Gregor ^a,b   Schirmacher, Anja ^a,b   Meuleman, Jan ^a   Tissir, Fadel ^a   Del Favero, Jurgen ^a   Stögbauer, Florian ^b   Young, Peter ^b   Ringelstein, Bernd ^b   Van Broeckhoven, Christine ^a   Timmerman, Vincent ^a  

^a DEPARTMENT OF PLANT SYSTEMS BIOLOGY   (Belgium)

^b UNIVERSITY OF MÜNSTER   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG;

ARTICLE; CHROMOSOME 17Q; CONTIG MAPPING; EXPRESSED SEQUENCE TAG; GENE LOCATION; GENE LOCUS; GENE MAPPING; GENETIC SUSCEPTIBILITY; HUMAN; HUMAN CELL; MUSCLE ATROPHY; PATHOGENESIS; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

EID: 0342948912     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1999.5991     Document Type: Article

References (45)

1. Altschul S., Gish W., Miller W., Myers E., Lipman D. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
2. Batzer M. A., Alegria-Hartman M., Deininger P. L. A consensus Alu repeat probe for physical mapping. Genet. Anal. Tech. Appl. 11:1994;34-38.
3. Chinen K., Takahashi E., Nakamura Y. Isolation and mapping of a human gene (SEC14L), partially homologous to yeast SEC14, that contains a variable number of tandem repeats (VNTR) site in its 3′ untranslated region. Cytogenet. Cell Genet. 73:1996;218-223.
4. Chumakov I. M., Rigault P., Le G. I., Bellanne C. C., Billault A., Guillou S., Soularue P., Guasconi G., Poullier E., Gros I. A YAC contig map of the human genome. Nature. 377:1995;175-297.
5. Church G. M., Gilbert W. Genomic sequencing. Proc. Natl. Acad. Sci. USA. 81:1984;1991-1995.
6. Collins F. S. Positional cloning moves from perditional to traditional. Nat. Genet. 9:1995;347-350.
7. Dausset J., Ougen P., Abderrahim H., Billault A., Sambucy J. L., Cohen D., Le Paslier D. The CEPH YAC library. Behring Inst. Mitt. 1992;13-20.
8. Deloukas P., Schuler G. D., Gyapay G., Beasley E. M., Soderlund C., Rodriguez-Tome P., Hui L., Matise T. C., McKusick K. B., Beckmann J. S., Bentolila S., Bihoreau M., Birren B. B., Browne J., Butler A., Castle A. B., Chiannilkulchai N., Clee C., Day P. J., Dehejia A., Dibling T., Drouot N., Duprat S., Fizames C., Bentley D. R. A physical map of 30,000 human genes. Science. 282:1998;744-746.
9. Flemington E., Bradshaw H. J., Traina D. V., Slagel V., Deininger P. L. Sequence, structure and promoter characterization of the human thymidine kinase gene. Gene. 52:1987;267-277.
10. Fu X. D., Maniatis T. Isolation of a complementary DNA that encodes the mammalian splicing factor SC35. Science. 256:1992;535-538.
11. Geiger L., Mancall E., Penn A., Tucker S. Familial neuralgic amyotrophy. Brain. 97:1974;87-102.
12. Hudson T. J., Stein L. D., Gerety S. S., Ma J., Castle A. B., Silva J., Slonim D. K., Baptista R., Kruglyak L., Xu S. H. An STS-based map of the human genome. Science. 270:1995;1945-1954.
13. Ioannou P., Amemiya C., Garnes J., Kroisel P., Shizuya H., Chen C., Batzer M., de Jong P. A new bacteriophage P1-derived vector for the propagation of large human DNA fragments. Nat. Genet. 6:1994;84-89.
14. Jacobs I. J., Smith S. A., Wiseman R. W., Futreal P. A., Harrington T., Osborne R. J., Leech V., Molyneux A., Berchuck A., Ponder B. A. A deletion unit on chromosome 17q in epithelial ovarian tumors distal to the familial breast/ovarian cancer locus. Cancer Res. 53:1993;1218-1221.
15. Kalikin L. M., Frank T. S., Svoboda-Newman S. M., Wetzel J. C., Cooney K. A., Petty E. M. A region of interstitial 17q25 allelic loss in ovarian tumors coincides with a defined region of loss in breast tumors. Oncogene. 14:1997;1991-1994.
16. Kalikin L. M., George R. A., Keller M. P., Bort S., Bowler N. S., Law D. J., Chance P. F., Petty E. M. An integrated physical and gene map of human distal chromosome 17q24-proximal 17q25 encompassing multiple disease loci. Genomics. 57:1999;36-42.
17. Kalikin L. M., Qu X., Frank T. S., Caduff R. F., Svoboda S. M., Law D. J., Petty E. M. Detailed deletion analysis of sporadic breast tumors defines an interstitial region of allelic loss on 17q25. Genes Chromosomes Cancer. 17:1996;64-68.
18. Kelsell D. P., Risk J. M., Leigh I. M., Stevens H. P., Ellis A., Hennies H. C., Reis A., Weissenbach J., Bishop D. T., Spurr N. K., Field J. K. Close mapping of the focal non-epidermolytic palmoplantar keratoderma (PPK) locus associated with oesophageal cancer (TOC). Hum. Mol. Genet. 5:1996;857-860.
19. Kitao S., Ohsugi I., Ichikawa K., Goto M., Furuichi Y., Shimamoto A. Cloning of two new human helicase genes of the RecQ family: Biological significance of multiple species in higher eukaryotes. Genomics. 54:1998;443-452.
20. Leister D., Thompson R., Gebhardt C. Production of long inverse PCR products facilitates the isolation of YAC insert termini. Technical Tips Online. 1997.
21. Markie D. YAC protocols. Walker J. Methods in Molecular Biology. 1995;Humana, Totowa.
22. Matysiak-Scholze U., Scherer G. TaqI/ClaI polymorphism in the P4HB gene. Hum. Mol. Genet. 3:1994;387.
23. Meuleman, J, Kuhlenbäumer, G, Schirmacher, A, Wehnert, M, De Jonghe, P, De Vriendt, E, Young, P, Airaksinen, E, Pou-Serradell, A, Prats, J-M, Ringelstrein, B, Stögbauer, F, Van Broeckhoven, C, and, Timmerman, V. Genetic refinement of the hereditary neuralgic amyotrophy (HNA) locus at chromosome 17q25, Eur. J. Hum. Genet, in press.
24. Milisav I., Jones M. H., Affara N. A. Characterization of a novel human dynein-related gene that is specifically expressed in testis. Mamm. Genome. 7:1996;667-672.
25. Nair R. P., Henseler T., Jenisch S., Stuart P., Bichakjian C. K., Lenk W., Westphal E., Guo S. W., Christophers E., Voorhees J. J., Elder J. T. Evidence for two psoriasis susceptibility loci (HLA and 17q) and two novel candidate regions (16q and 20p) by genome-wide scan. Hum. Mol. Genet. 6:1997;1349-1356.
26. Orita M., Sekiya T., Hayashi K. DNA sequence polymorphisms in Alu repeats. Genomics. 8:1990;271-278.
27. Osoegawa K., Woon P. Y., Zhao B., Frengen E., Tateno M., Catanese J. J., de Jong P. An improved approach for construction of bacterial artificial chromosome libraries. Genomics. 52:1998;1-8.
28. Pellegrino J. E., Rebbeck T. R., Brown M. J., Bird T. D., Chance P. F. Mapping of hereditary neuralgic amyotrophy (familial brachial plexus neuropathy) to distal chromosome 17q. Neurology. 46:1996;1128-1132.
29. Petty E. M., Kalikin L. M., Orringer M. B., Beer D. G. Distal chromosome 17q loss in Barrett's esophageal and gastric cardia adenocarcinomas: Implications for tumorigenesis. Mol. Carcinogenesis. 22:1998;222-228.
30. Plummer S. J., Adams L., Simmons J. A., Casey G. Localization of a growth suppressor activity in MCF7 breast cancer cells to chromosome 17q24-q25. Oncogene. 14:1997;2339-2345.
31. Rawlings C. J., Searls D. B. Computational gene discovery and human disease. Curr. Opin. Genet. Dev. 7:1997;416-423.
32. Schuler G. D., Boguski M. S., Stewart E. A., Stein L. D., Gyapay G., Rice K., White R. E., Rodriguez T. P., Aggarwal A., Bajorek E., Bentolila S., Birren B. B., Butler A., Castle A. B., Chiannilkulchai N., Chu A., Clee C., Cowles S., Day P. J., Dibling T., Drouot N., Dunham I., Duprat S., East C., Hudson T. J. A gene map of the human genome. Science. 274:1996;540-546.
33. Shizuya H., Birren B., Kim U., Mancino V., Slepak T., Tachiiri Y., Simon M. Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc. Natl. Acad. Sci. USA. 89:1992;8794-8797.
34. Silverman G., Ye R., Pollock K., Sadler J., Korsmeyer S. Use of yeast artificial chromosome clones for mapping and walking within human chromosome segment 18q21.3. Proc. Natl. Acad. Sci. USA. 86:1989;7485-7489.
35. Southern E. M., Anand R., Brown W. R., Fletcher D. S. A model for the separation of large DNA molecules by crossed field gel electrophoresis. Nucleic Acids Res. 15:1987;5925-5943.
36. Stewart E. A., McKusick K. B., Aggarwal A., Bajorek E., Brady S., Chu A., Fang N., Hadley D., Harris M., Hussain S., Lee R., Maratukulam A., O'Connor K., Perkins S., Piercy M., Qin F., Reif T., Sanders C., She X., Sun W. L., Tabar P., Voyticky S., Cowles S., Fan J. B., Cox D. R. An STS-based radiation hybrid map of the human genome. Genome Res. 7:1997;422-433.
37. Stögbauer F., Young P., Timmerman V., Spoelders P., Ringelstein E. B., Van Broeckhoven C., Kurlemann G. Refinement of the hereditary neuralgic amyotrophy (HNA) locus to chromosome 17q24-q25. Hum. Genet. 99:1997;685-687.
38. Taylor R. Heredofamilial mononeuritis multiplex with brachial plexus predeliction. Brain. 82:1960;113-137.
39. Theile M., Hartmann S., Scherthan H., Arnold W., Deppert W., Frege R., Glaab F., Haensch W., Scherneck S. Suppression of tumorigenicity of breast cancer cells by transfer of human chromosome 17 does not require transferred BRCA1 and p53 genes. Oncogene. 10:1995;439-447.
40. Tomfohrde J., Silverman A., Barnes R., Fernandez-Vina M. A., Young M., Lory D., Morris L., Wuepper K. D., Stastny P., Menter A. Gene for familial psoriasis susceptibility mapped to the distal end of human chromosome 17q. Science. 264:1994;1141-1145.
41. Tsairis P., Dyck P., Mulder D. Natural history of brachial plexus neuropathy. Arch. Neurol. 27:1972;109-117.
42. Tsujimoto A., Nyunoya H., Morita T., Sato T., Shimotohno K. Isolation of cDNAs for DNA-binding proteins which specifically bind to a tax-responsive enhancer element in the long terminal repeat of human T-cell leukemia virus type I. J. Virol. 65:1991;1420-1426.
43. von Brevern M., Hollstein M. C., Risk J. M., Garde J., Bennett W. P., Harris C. C., Muehlbauer K. R., Field J. K. Loss of heterozygosity in sporadic oesophageal tumors in the tylosis oesophageal cancer (TOC) gene region of chromosome 17q. Oncogene. 17:1998;2101-2105.
44. Wehnert M., Timmerman V., Spoelders P., Meuleman J., Nelis E., Van Broeckhoven C. Further evidence supporting linkage of hereditary neuralgic amyotrophy to chromosome 17q. Neurology. 48:1997;1719-1721.
45. Windebank A. Inherited recurrent focal neuropathies. Dyck P., Thomas P., Griffin J. Peripheral Neuropathy. 1993;1137-1148 Saunders, Philadelphia.