메뉴 건너뛰기




Volumn 14, Issue 5, 2003, Pages 341-349

PepPat, a pattern-based oligopeptide homology search method and the identification of a novel tachykinin-like peptide

Author keywords

[No Author keywords available]

Indexed keywords

NEUROKININ 1 RECEPTOR AGONIST; OLIGOPEPTIDE; PEPTIDE; TACHYKININ; TACHYKININ LIKE PEPTIDE; UNCLASSIFIED DRUG;

EID: 0242499963     PISSN: 09388990     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00335-002-3061-y     Document Type: Article
Times cited : (16)

References (40)
  • 2
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul SF, Gish W et al. (1990) Basic local alignment search tool. J Mol Biol 215, 403-410
    • (1990) J Mol Biol , vol.215 , pp. 403-410
    • Altschul, S.F.1    Gish, W.2
  • 3
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation 01 protein database search programs
    • Altschul SF, Madden TL et al. (1997) Gapped BLAST and PSI-BLAST: a new generation 01 protein database search programs. Nucleic Acids Res 25, 3389-3402
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2
  • 4
    • 0035166973 scopus 로고    scopus 로고
    • The InterPro database, an integrated documentation resource for protein families, domains and functional sites
    • Apweiler R, Attwood TK et al. (2001) The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res 29, 37-40
    • (2001) Nucleic Acids Res , vol.29 , pp. 37-40
    • Apweiler, R.1    Attwood, T.K.2
  • 5
    • 18444381153 scopus 로고    scopus 로고
    • PRINTS and PRINTS-S shed light on protein ancestry
    • Attwood, TK, Blythe MJ et al. (2002) PRINTS and PRINTS-S shed light on protein ancestry. Nucleic Acids Res 30, 239-241
    • (2002) Nucleic Acids Res , vol.30 , pp. 239-241
    • Attwood, T.K.1    Blythe, M.J.2
  • 7
    • 0011542799 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Bateman A, Birney E et al. (2002) The Pfam protein families database. Nucleic Acids Res 30, 276-280
    • (2002) Nucleic Acids Res , vol.30 , pp. 276-280
    • Bateman, A.1    Birney, E.2
  • 8
    • 0036157658 scopus 로고    scopus 로고
    • Pharmacological profile of the novel mammalian tachykinin, hemokinin 1
    • Bellucci F, Carini F et al. (2002) Pharmacological profile of the novel mammalian tachykinin, hemokinin 1. Br J Pharmacol 135, 266-274
    • (2002) Br J Pharmacol , vol.135 , pp. 266-274
    • Bellucci, F.1    Carini, F.2
  • 9
    • 0037076959 scopus 로고    scopus 로고
    • Pharmacological profile of hemokinin 1: A novel member of the tachykinin family
    • Camarda V, Rizzi A et al. (2002) Pharmacological profile of hemokinin 1: a novel member of the tachykinin family. Life Sci 71, 363-370
    • (2002) Life Sci , vol.71 , pp. 363-370
    • Camarda, V.1    Rizzi, A.2
  • 10
    • 0033957841 scopus 로고    scopus 로고
    • ProDom and ProDom-CG: Tools for protein domain analysis and whole genome comparison
    • Corpet F, Servant F et al. (2000) ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparison. Nucleic Acids Res
    • (2000) Nucleic Acids Res
    • Corpet, F.1    Servant, F.2
  • 11
    • 0001923233 scopus 로고
    • Survey of new data and computer methods of analysis
    • Georgetown University, Washington, D.C.: National Biomedical Research Foundation
    • Dayhoff MO (1978) Survey of new data and computer methods of analysis. In: Atlas of protein sequence and structure, vol. 5, suppl. 3. (Georgetown University, Washington, D.C.: National Biomedical Research Foundation)
    • (1978) Atlas of Protein Sequence and Structure , vol.5 , Issue.SUPPL. 3
    • Dayhoff, M.O.1
  • 13
    • 0034457309 scopus 로고    scopus 로고
    • A statistical view of FMRFamide neuropeptide diversity
    • Espinoza E, Carrigan M et al. (2000) A statistical view of FMRFamide neuropeptide diversity. Mol Neurobiol 21, 35-56
    • (2000) Mol Neurobiol , vol.21 , pp. 35-56
    • Espinoza, E.1    Carrigan, M.2
  • 14
    • 0032944238 scopus 로고    scopus 로고
    • The PROSITE database, its status in 2002
    • Falquet L, Pagni M et al. (2002) The PROSITE database, its status in 2002. Nucleic Acids Res 27, 215-219
    • (2002) Nucleic Acids Res , vol.27 , pp. 215-219
    • Falquet, L.1    Pagni, M.2
  • 15
    • 0032436341 scopus 로고    scopus 로고
    • DOMO: A new database of aligned protein domains
    • Gracy J, Argos P (1998) DOMO: a new database of aligned protein domains. Trends
    • (1998) Trends
    • Gracy, J.1    Argos, P.2
  • 16
    • 0026706711 scopus 로고
    • Relationships among the FMRFamide-like peptides
    • Greenberg MJ, Price DA (1992) Relationships among the FMRFamide-like peptides. Prog Brain Res 92, 25-27
    • (1992) Prog Brain Res , vol.92 , pp. 25-27
    • Greenberg, M.J.1    Price, D.A.2
  • 17
    • 0033977579 scopus 로고    scopus 로고
    • Increased coverage of protein families with the blocks database servers
    • Henikoff JG, Greene EA (2000) Increased coverage of protein families with the blocks database servers. Nucleic Acids Res 28, 228-230
    • (2000) Nucleic Acids Res , vol.28 , pp. 228-230
    • Henikoff, J.G.1    Greene, E.A.2
  • 18
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • Henikoff S, and Henikoff JG (1992) Amino acid substitution matrices from protein blocks. Proc Natl Acad Sci USA 89, 10915-10919
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 19
    • 0034306368 scopus 로고    scopus 로고
    • New neuropeptides containing carboxy-terminal RFamide and their receptor in mammals
    • Hinuma S, Shintani Y et al. (2000) New neuropeptides containing carboxy-terminal RFamide and their receptor in mammals. Nat Cell Biol 2, 703-708
    • (2000) Nat Cell Biol , vol.2 , pp. 703-708
    • Hinuma, S.1    Shintani, Y.2
  • 22
    • 0036086410 scopus 로고    scopus 로고
    • Recent improvements to the SMART domain-based sequence annotation resource
    • Letunc I, Goodstadt L et al. (2002) Recent improvements to the SMART domain-based sequence annotation resource. Nucleic Acids Res 30, 242-244
    • (2002) Nucleic Acids Res , vol.30 , pp. 242-244
    • Letunc, I.1    Goodstadt, L.2
  • 23
    • 0036087630 scopus 로고    scopus 로고
    • CCD: A database of conserved domain alignments with links to domain three-dimensional structures
    • Marchler-Bauer A, Panchenko AR et al. (2002) CCD: a database of conserved domain alignments with links to domain three-dimensional structures. Nucleic Acids Res 30, 281-283
    • (2002) Nucleic Acids Res , vol.30 , pp. 281-283
    • Marchler-Bauer, A.1    Panchenko, A.R.2
  • 24
    • 0027192852 scopus 로고
    • A system for pattern matching applications on biosequences
    • Mehldau G, Myers G (1993) A system for pattern matching applications on biosequences. Comput Appl Biosci 9, 299-314
    • (1993) Comput Appl Biosci , vol.9 , pp. 299-314
    • Mehldau, G.1    Myers, G.2
  • 25
    • 0035203076 scopus 로고    scopus 로고
    • Hemokinin is a full agonist at the substance P receptor
    • Morteau O, Lu B et al. (2001) Hemokinin is a full agonist at the substance P receptor. Nat Immunol 2, 1088
    • (2001) Nat Immunol , vol.2 , pp. 1088
    • Morteau, O.1    Lu, B.2
  • 26
    • 0003939246 scopus 로고    scopus 로고
    • Cold Spring harbour, N.Y.: Cold Sping Harbor Laboratory Press) ISBN 0879695978
    • Mount DW (2001) Bioinformatics: sequence and genome analysis. (Cold Spring harbour, N.Y.: Cold Sping Harbor Laboratory Press) ISBN: 0879695978
    • (2001) Bioinformatics: Sequence and Genome Analysis
    • Mount, D.W.1
  • 27
    • 0024279227 scopus 로고
    • Identification and characterization of a Drosophila homologue to the vertebrate neuropeptide cholecystokinin
    • Nichols R, Schneuwly SA, Dixon JE (1988) Identification and characterization of a Drosophila homologue to the vertebrate neuropeptide cholecystokinin. J Biol Chem 263, 12167-12170
    • (1988) J Biol Chem , vol.263 , pp. 12167-12170
    • Nichols, R.1    Schneuwly, S.A.2    Dixon, J.E.3
  • 28
    • 0033990061 scopus 로고    scopus 로고
    • Flexible sequence similarity searching with the FASTA3 program package
    • Pearson WR (2000) Flexible sequence similarity searching with the FASTA3 program package. Methods Mol Biol 132, 185-219
    • (2000) Methods Mol Biol , vol.132 , pp. 185-219
    • Pearson, W.R.1
  • 29
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson WR, Lipman DJ (1988) Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85, 2444-2448
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 30
    • 0033915990 scopus 로고    scopus 로고
    • PatSearch: A pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance
    • Pesole G, Liuni S, D'Souza (2000) PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance. Bioinformatics 16, 439-450
    • (2000) Bioinformatics , vol.16 , pp. 439-450
    • Pesole, G.1    Liuni, S.2    D'Souza3
  • 31
    • 0017773076 scopus 로고
    • Structure of a molluscan cardioexcitatory neuropeptide
    • Price DA, Greenberg MJ (1977) Structure of a molluscan cardioexcitatory neuropeptide. Science 197, 670-672
    • (1977) Science , vol.197 , pp. 670-672
    • Price, D.A.1    Greenberg, M.J.2
  • 32
    • 0025534696 scopus 로고
    • The actions of FMRF-NH2 and FMRF-NH2 related peptides on mammals
    • Raffa RB (1991) The actions of FMRF-NH2 and FMRF-NH2 related peptides on mammals. NIDA Res Monogr 105, 243-249
    • (1991) NIDA Res Monogr , vol.105 , pp. 243-249
    • Raffa, R.B.1
  • 33
    • 0038438514 scopus 로고    scopus 로고
    • IMPALA: Matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices
    • Schaffer AA, Wolf YI et al. (1999) IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices. Bioinformatics 15, 1000-1011
    • (1999) Bioinformatics , vol.15 , pp. 1000-1011
    • Schaffer, A.A.1    Wolf, Y.I.2
  • 34
    • 0024121490 scopus 로고
    • Isolation and characterization of a Drosophila gene that encodes multiple neuropeptides related to Phe-Met-Arg-Phe-NH2 (FMRFamide)
    • Schneider LR, Taghert PH (1988) Isolation and characterization of a Drosophila gene that encodes multiple neuropeptides related to Phe-Met-Arg-Phe-NH2 (FMRFamide). Proc Natl Acad Sci USA 85, 1193-1197
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 1193-1197
    • Schneider, L.R.1    Taghert, P.H.2
  • 38
    • 18444384216 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information: 2002 Update
    • Wheeler DL, Church DM et al. (2002) Database resources of the National Center for Biotechnology Information: 2002 update. Nucleic Acids Res 30, 13-16
    • (2002) Nucleic Acids Res , vol.30 , pp. 13-16
    • Wheeler, D.L.1    Church, D.M.2
  • 39
    • 0034332431 scopus 로고    scopus 로고
    • Hemokinin is a hematopoietic-specific tachykinin that regulates B lymphoiesis
    • Zhang Y, Lu L et al. (2000) Hemokinin is a hematopoietic-specific tachykinin that regulates B lymphoiesis. Nat Immunol 1,392-397
    • (2000) Nat Immunol , vol.1 , pp. 392-397
    • Zhang, Y.1    Lu, L.2
  • 40
    • 0032169849 scopus 로고    scopus 로고
    • Protein sequence similarity searches using patterns as seeds
    • Zhang Z, Schaffer A et al. (1998) Protein sequence similarity searches using patterns as seeds. Nucleic Acids Res 26, 3986-3990
    • (1998) Nucleic Acids Res , vol.26 , pp. 3986-3990
    • Zhang, Z.1    Schaffer, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.